A0A023IPA9_HUMAN Loading...

Integrin a4 subunit

AlphaFold DB , UniProt , Accession A0A023IPA9, Species HUMAN (Homo sapiens, Human), Gene ITGA4, Length 23 aa.

						>A0A023IPA9_HUMAN|A0A023IPA9|ITGA4
DYVKKFGENFASCQAGISSFYTK
					

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(Predicted Aligned Error values between residue pairs)

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Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	D	61.8	Low	69.8	Low	149 Å²	149	131.2 Å²	131.2	80%	0.797	67%	0.669	S	S	*	*				0	-37.4	0	-149.8	-112.6	0	0	114	V3 K4 K5	D1-V3 PolarHBondContact O-N 3.42Å; D1-K4 PolarHBondContact O-N 3.08Å; D1-K5 IonicContact OD1-NZ 3.46Å; D1-K5 PolarHBondContact OD1-NZ 3.14Å
2	Y	61.9	Low	70.4	Confident	185 Å²	185	124.3 Å²	124.3	73%	0.725	64%	0.642	S	S	*	*	H	α-helix	trans	-59.5	-43.9	-179.4	-176.9	-101.8	0	0	115.2	K4 K5 F6	Y2-K4 VanDerWaalsContact C-N 3.3Å; Y2-K4 PolarHBondContact O-N 2.88Å; Y2-K5 PolarHBondContact O-N 3.48Å; Y2-F6 PolarHBondContact O-N 3.28Å
3	V	63.4	Low	71.3	Confident	124 Å²	124	120.7 Å²	120.7	75%	0.752	63%	0.632	S	S	*	*	H	α-helix	trans	-65.4	-30.4	-177.2	178.7	0	0	0	112.9	D1 K5 F6	D1-V3 PolarHBondContact O-N 3.42Å; V3-K5 VanDerWaalsContact C-N 3.33Å; V3-K5 PolarHBondContact O-N 2.85Å; V3-F6 PolarHBondContact O-N 2.99Å
4	K	65.1	Low	72	Confident	169 Å²	169	122.7 Å²	122.7	74%	0.735	64%	0.637	S	S	*	*	H	α-helix	trans	-67	-36.4	178	-74.3	-174.2	177	-177	111.6	D1 Y2	D1-K4 PolarHBondContact O-N 3.08Å; Y2-K4 VanDerWaalsContact C-N 3.3Å; Y2-K4 PolarHBondContact O-N 2.88Å
5	K	65.5	Low	72.8	Confident	127 Å²	127	120.2 Å²	120.2	55%	0.552	64%	0.641	S	S	*	*	H	α-helix	trans	-76.1	-22.7	179.3	-65.5	179.4	180	171	113.8	D1 Y2 V3 G7	D1-K5 IonicContact OD1-NZ 3.46Å; D1-K5 PolarHBondContact OD1-NZ 3.14Å; Y2-K5 PolarHBondContact O-N 3.48Å; V3-K5 VanDerWaalsContact C-N 3.33Å; V3-K5 PolarHBondContact O-N 2.85Å; K5-G7 PolarHBondContact O-N 2.89Å
6	F	69.5	Low	73.3	Confident	124 Å²	124	116.8 Å²	116.8	54%	0.544	64%	0.644	S	S	.	*	T	Hydrogen-bonded Turn	trans	-67.5	-19.1	-175.4	-172.3	-97.6	0	0	113.7	Y2 V3 S12	Y2-F6 PolarHBondContact O-N 3.28Å; V3-F6 PolarHBondContact O-N 2.99Å; F6-S12 WeakPolarHBondContact O-CB 3.48Å; F6-S12 PolarHBondContact O-OG 3.45Å
7	G	66.4	Low	74.1	Confident	53 Å²	53	118.1 Å²	118.1	55%	0.546	65%	0.647	S	S	.	*	T	Hydrogen-bonded Turn	trans	-114.6	-1	-178.6	0	0	0	0	115.4	K5	K5-G7 PolarHBondContact O-N 2.89Å
8	E	81.6	Confident	74.7	Confident	113 Å²	113	117.3 Å²	117.3	53%	0.528	65%	0.652	S	S	.	*	G	3₁₀ helix	trans	-74	141.5	-180	-70.2	179.8	125.3	0	110.6	F10 A11	E8-F10 PolarHBondContact O-N 3.05Å; E8-A11 PolarHBondContact O-N 3.12Å; E8-A11 WeakPolarHBondContact O-CB 3.42Å
9	N	77.4	Confident	75.3	Confident	154 Å²	154	117.2 Å²	117.2	82%	0.824	66%	0.66	S	S	*	*	G	3₁₀ helix	trans	49	50.4	171.1	-57.2	-50.8	0	0	115.1	A11	N9-A11 PolarHBondContact O-N 3.26Å; N9-A11 VanDerWaalsContact O-N 3.12Å
10	F	79.4	Confident	76.1	Confident	173 Å²	173	120.5 Å²	120.5	76%	0.759	67%	0.667	S	S	*	*	G	3₁₀ helix	trans	62.5	14.8	178.5	-50.2	-79	0	0	115.2	E8 S12 C13	E8-F10 PolarHBondContact O-N 3.05Å; F10-S12 PolarHBondContact O-N 3.42Å; F10-C13 PolarHBondContact O-SG 3.41Å; F10-C13 PolarHBondContact O-N 3.24Å; F10-C13 WeakPolarHBondContact O-CB 3.14Å; F10-C13 HydrophobicContact CD1-CB 4.21Å; F10-C13 HydrophobicContact CB-CB 3.85Å
11	A	76.2	Confident	76.6	Confident	72 Å²	72	124.2 Å²	124.2	60%	0.595	67%	0.673	S	S	*	*	T	Hydrogen-bonded Turn	trans	-55.1	-20.3	-175.1	0	0	0	0	114.8	E8 N9	E8-A11 PolarHBondContact O-N 3.12Å; E8-A11 WeakPolarHBondContact O-CB 3.42Å; N9-A11 PolarHBondContact O-N 3.26Å; N9-A11 VanDerWaalsContact O-N 3.12Å
12	S	76.9	Confident	77.6	Confident	49 Å²	49	122.1 Å²	122.1	34%	0.343	67%	0.665	S	S	.	*	T	Hydrogen-bonded Turn	trans	-129.4	23.8	177.7	47.2	0	0	0	113.3	F6 F10 Q14	F6-S12 WeakPolarHBondContact O-CB 3.48Å; F6-S12 PolarHBondContact O-OG 3.45Å; F10-S12 PolarHBondContact O-N 3.42Å; S12-Q14 PolarHBondContact O-N 3.33Å; S12-Q14 VanDerWaalsContact O-N 3.08Å
13	C	81.6	Confident	78.2	Confident	77 Å²	77	125.3 Å²	125.3	52%	0.52	68%	0.683	S	S	.	*			trans	-65.4	-16	-170.9	66.7	0	0	0	115.5	F10 A15	F10-C13 PolarHBondContact O-SG 3.41Å; F10-C13 PolarHBondContact O-N 3.24Å; F10-C13 WeakPolarHBondContact O-CB 3.14Å; F10-C13 HydrophobicContact CD1-CB 4.21Å; F10-C13 HydrophobicContact CB-CB 3.85Å; C13-A15 PolarHBondContact O-N 3.49Å
14	Q	80.9	Confident	79	Confident	149 Å²	149	125.4 Å²	125.4	70%	0.696	68%	0.679	S	S	*	*			trans	42.9	33.9	-178.5	-62.3	-174.5	-93.8	0	113.5	S12 G16 I17	S12-Q14 PolarHBondContact O-N 3.33Å; S12-Q14 VanDerWaalsContact O-N 3.08Å; Q14-G16 PolarHBondContact O-N 3.37Å; Q14-I17 PolarHBondContact O-N 3.23Å
15	A	84.7	Confident	79.7	Confident	85 Å²	85	123.1 Å²	123.1	70%	0.702	68%	0.677	S	S	*	*	T	Hydrogen-bonded Turn	trans	-66.7	134.6	178.9	0	0	0	0	109.3	C13	C13-A15 PolarHBondContact O-N 3.49Å
16	G	80.6	Confident	80.5	Confident	66 Å²	66	122.9 Å²	122.9	68%	0.68	68%	0.683	S	S	*	*	T	Hydrogen-bonded Turn	trans	82.9	16.1	-178.4	0	0	0	0	115.3	Q14 S18	Q14-G16 PolarHBondContact O-N 3.37Å; G16-S18 PolarHBondContact O-N 3.46Å; G16-S18 VanDerWaalsContact O-N 3.14Å
17	I	87.2	Confident	81.1	Confident	138 Å²	138	122.8 Å²	122.8	71%	0.708	69%	0.692	S	S	*	*	S	Bend	trans	-54.1	-31.1	172.7	-168.2	165.4	0	0	112.8	Q14	Q14-I17 PolarHBondContact O-N 3.23Å
18	S	85.1	Confident	82.1	Confident	105 Å²	105	127.2 Å²	127.2	73%	0.734	70%	0.701	S	S	*	*			trans	-154.7	132.5	160.4	60.8	0	0	0	108.8	G16	G16-S18 PolarHBondContact O-N 3.46Å; G16-S18 VanDerWaalsContact O-N 3.14Å
19	S	85.6	Confident	82.1	Confident	114 Å²	114	128.1 Å²	128.1	80%	0.797	71%	0.712	S	S	*	*			trans	-122.9	138.3	165	55.9	0	0	0	108.4
20	F	90.3	Very high	82.4	Confident	184 Å²	184	126.3 Å²	126.3	81%	0.807	70%	0.704	S	S	*	*			trans	-132.9	125.6	177.5	-177.7	-100.5	0	0	108.6	T22	F20-T22 HydrophobicContact CE1-CG2 4.06Å
21	Y	86.9	Confident	82.7	Confident	199 Å²	199	122.7 Å²	122.7	78%	0.78	70%	0.7	S	S	*	*			trans	-131.1	123.9	176.6	-178.5	-94.5	0	0	108.3
22	T	84.1	Confident	83.2	Confident	104 Å²	104	126.9 Å²	126.9	64%	0.638	71%	0.709	S	S	*	*			trans	-119	146.5	171.5	-171.4	0	0	0	109.1	F20	F20-T22 HydrophobicContact CE1-CG2 4.06Å
23	K	74.4	Confident	83.8	Confident	253 Å²	253	134 Å²	134	100%	1.1	74%	0.742	S	S	*	*			trans	-66.5	0	-172	-67.6	-178.8	-177.6	176.6	113.2

Retrieved 23 of 23 residues in 20.9 ms (Link to these results)

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