A0A060H0F8_HUMAN Loading...

MHC class II antigen

AlphaFold DB , UniProt , Accession A0A060H0F8, Species HUMAN (Homo sapiens, Human), Gene HLA-A, Length 72 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1P40.4Very low54.4Low189 Ų189142.3 Ų142.3100%1.22783%0.826SS**  0104.7030.2-9.2000110
2G47.9Very low55.2Low75 Ų75143.8 Ų143.877%0.77383%0.827SS**  cis116.489.847.100000108
3S50.1Low55.9Low123 Ų123143.3 Ų143.386%0.8682%0.819SS**  trans167.3112.8132.253.50000110.7A5S3-A5 PolarHBondContact O-N 2.81Å
4R52.4Low56.6Low243 Ų243138.4 Ų138.492%0.91781%0.805SS**  trans-85.296.5174.1179.6-178.7-174.9-171.62106.8G6R4-G6 PolarHBondContact O-N 3.16Å
5A53.5Low57.4Low98 Ų98137.1 Ų137.181%0.8180%0.802SS**  trans-82.498.216700000108S3 R7S3-A5 PolarHBondContact O-N 2.81Å; A5-R7 VanDerWaalsContact O-N 3.16Å; A5-R7 PolarHBondContact O-N 2.96Å
6G55.8Low58Low64 Ų64142.2 Ų142.266%0.6680%0.804SS**  trans-56.8114.5-176.700000112.4R4 R8R4-G6 PolarHBondContact O-N 3.16Å; G6-R8 VanDerWaalsContact O-N 3.09Å; G6-R8 PolarHBondContact O-N 3.08Å
7R55.3Low58.7Low236 Ų236142.4 Ų142.489%0.89180%0.801SS**  trans-66.1106.6156-84.3-176.7179.4-120.80106.8A5 V9A5-R7 VanDerWaalsContact O-N 3.16Å; A5-R7 PolarHBondContact O-N 2.96Å; R7-V9 PolarHBondContact O-N 2.9Å
8R59.6Low59.1Low247 Ų247141.2 Ų141.293%0.93280%0.801SS**  trans-60.3107.2168.1-68.1-179.4-179.5-123.21.6107G6 G10G6-R8 VanDerWaalsContact O-N 3.09Å; G6-R8 PolarHBondContact O-N 3.08Å; R8-G10 PolarHBondContact O-N 2.79Å; R8-G10 VanDerWaalsContact O-N 3.08Å
9V58.3Low59.4Low121 Ų121141.8 Ų141.873%0.73380%0.801SS**  trans-71.999.9169.9-173.60000105.2R7 L12R7-V9 PolarHBondContact O-N 2.9Å; V9-L12 HydrophobicContact CG1-CD1 4.27Å
10G64.4Low59.5Low48 Ų48142.9 Ų142.950%0.49580%0.798SS.*  trans-57.4153.5165.300000109.1R8 L12R8-G10 PolarHBondContact O-N 2.79Å; R8-G10 VanDerWaalsContact O-N 3.08Å; G10-L12 PolarHBondContact O-N 2.97Å
11P60.5Low59.8Low121 Ų121145 Ų14579%0.78680%0.802SS**  trans-55.5124.8-175.924.3-32.2000108.3L13P11-L13 VanDerWaalsContact C-N 3.26Å; P11-L13 PolarHBondContact O-N 2.92Å
12L64.1Low60.8Low160 Ų160139.5 Ų139.584%0.83877%0.765SS**  trans-57.198.6169.6-78.8124000106.3V9 G10 A14V9-L12 HydrophobicContact CG1-CD1 4.27Å; G10-L12 PolarHBondContact O-N 2.97Å; L12-A14 VanDerWaalsContact C-N 3.35Å; L12-A14 PolarHBondContact O-N 2.89Å
13L64.3Low61.4Low138 Ų138143.8 Ų143.872%0.72376%0.762SS**  trans-55.6106169.1-87.2144.4000105.5P11P11-L13 VanDerWaalsContact C-N 3.26Å; P11-L13 PolarHBondContact O-N 2.92Å
14A65.7Low61.9Low75 Ų75145.3 Ų145.362%0.6276%0.756SS**  trans-49.6139.4174.800000108.5L12 R16L12-A14 VanDerWaalsContact C-N 3.35Å; L12-A14 PolarHBondContact O-N 2.89Å; A14-R16 PolarHBondContact O-N 2.76Å
15P68.4Low62.5Low119 Ų119141.3 Ų141.377%0.77375%0.747SS**  trans-52.8112.7173.3-22.832.1000108.3L17P15-L17 VanDerWaalsContact C-N 3.32Å; P15-L17 PolarHBondContact O-N 2.93Å
16R67.9Low63.2Low218 Ų218143.3 Ų143.382%0.82374%0.743SS**  trans-67.299.3172.2-74.6-175.3161.9121.5-2.5106.1A14A14-R16 PolarHBondContact O-N 2.76Å
17L69.4Low63.7Low146 Ų146151.6 Ų151.676%0.76475%0.754SS**  trans-51.7135.2171-66.4169.8000107.9P15 L19P15-L17 VanDerWaalsContact C-N 3.32Å; P15-L17 PolarHBondContact O-N 2.93Å; L17-L19 PolarHBondContact O-N 2.73Å
18P65.3Low64.3Low121 Ų121145.8 Ų145.879%0.78675%0.745SS**  trans-60.1113.8172.624-29.7000107H20P18-H20 PolarHBondContact O-N 2.93Å
19L64.7Low64.7Low153 Ų153139.4 Ų139.480%0.80174%0.735SS**  trans-61.4106.3170.4-66.2176.3000105.4L17 E21L17-L19 PolarHBondContact O-N 2.73Å; L19-E21 PolarHBondContact O-N 3.09Å
20H61.5Low65.3Low163 Ų163138.1 Ų138.176%0.75574%0.737SS**  trans-56.8114.2-177.2-162.459.2000108P18 V22P18-H20 PolarHBondContact O-N 2.93Å; H20-V22 PolarHBondContact O-N 3.28Å; H20-V22 VanDerWaalsContact CD2-CG2 3.41Å; H20-V22 WeakPolarHBondContact CD2-CG2 3.35Å
21E65.2Low65.4Low187 Ų187146.8 Ų146.887%0.87476%0.755SS**SBendtrans-73.670-174.4-169.8170-164.500109.8L19L19-E21 PolarHBondContact O-N 3.09Å
22V61.8Low65.9Low74 Ų74146.2 Ų146.245%0.44875%0.751SS.*  trans-149.154.7167.5-128.20000109.7H20 H24H20-V22 PolarHBondContact O-N 3.28Å; H20-V22 VanDerWaalsContact CD2-CG2 3.41Å; H20-V22 WeakPolarHBondContact CD2-CG2 3.35Å; V22-H24 WeakPolarHBondContact CG1-NE2 3.41Å; V22-H24 PolarHBondContact O-N 3.48Å
23F60.6Low66.1Low165 Ų165151.3 Ų151.372%0.72476%0.76SS**  trans-69.788.4151.2-73.5-79.9000106.6H25F23-H25 PolarHBondContact O-N 3.02Å
24H61.5Low66.3Low155 Ų155147 Ų14772%0.71875%0.749SS**  trans-61.292.7159.8-72.4-61000106.5V22 I26V22-H24 WeakPolarHBondContact CG1-NE2 3.41Å; V22-H24 PolarHBondContact O-N 3.48Å; H24-I26 PolarHBondContact O-N 3.06Å
25H65.8Low66.6Low158 Ų158147.4 Ų147.473%0.73175%0.751SS**  trans-66.377.6165.5-66.1-40.3000107F23 R27F23-H25 PolarHBondContact O-N 3.02Å; H25-R27 VanDerWaalsContact C-N 3.29Å; H25-R27 PolarHBondContact O-N 2.89Å
26I67.2Low66.7Low141 Ų141146.7 Ų146.772%0.72375%0.747SS**  trans-51.9109.3155.6-62.2167.1000102.8H24 V28H24-I26 PolarHBondContact O-N 3.06Å; I26-V28 HydrophobicContact CG2-CG2 4.42Å; I26-V28 PolarHBondContact O-N 3.01Å
27R66.9Low66.5Low237 Ų237143.9 Ų143.989%0.89475%0.748SS**  trans-63.384.9178.4-71.2-179.5178.1179.7-0.8106.8H25 P29H25-R27 VanDerWaalsContact C-N 3.29Å; H25-R27 PolarHBondContact O-N 2.89Å; R27-P29 WeakPolarHBondContact O-CD 3.15Å
28V67.6Low66.3Low115 Ų115144.4 Ų144.470%0.69775%0.746SS**  trans-71.8111.9165.8179.50000103.8I26 A30I26-V28 HydrophobicContact CG2-CG2 4.42Å; I26-V28 PolarHBondContact O-N 3.01Å; V28-A30 PolarHBondContact O-N 2.68Å
29P67.9Low66.4Low113 Ų113149.8 Ų149.873%0.73475%0.75SS**  trans-54.5121.2167.422.3-30.1000106.2R27 R31R27-P29 WeakPolarHBondContact O-CD 3.15Å; P29-R31 PolarHBondContact O-N 3.04Å
30A71.1Confident66.5Low94 Ų94154 Ų15478%0.77776%0.755SS**  trans-53.8106.9177.400000106.8V28 P32V28-A30 PolarHBondContact O-N 2.68Å; A30-P32 WeakPolarHBondContact O-CD 3.38Å
31R66.8Low66.5Low229 Ų229149.4 Ų149.486%0.86475%0.753SS**  trans-52.3120.1-179.7-126.5179.2-177.8-179.50.5105.7P29 R33P29-R31 PolarHBondContact O-N 3.04Å; R31-R33 PolarHBondContact O-N 2.81Å
32P70.6Confident66.3Low110 Ų110147.8 Ų147.871%0.71475%0.749SS**  trans-57.3122.5174.122.3-30.8000106.8A30 G34A30-P32 WeakPolarHBondContact O-CD 3.38Å; P32-G34 PolarHBondContact O-N 2.81Å
33R68.8Low66.4Low267 Ų267156.5 Ų156.5100%1.00877%0.774SS**SBendtrans-73.158.8171.8-79.9-173.8171.6-173.1-1.3109.6R31R31-R33 PolarHBondContact O-N 2.81Å
34G67.5Low66.7Low48 Ų48151.8 Ų151.850%0.49577%0.772SS.*SBendtrans-160.4108.3-179.700000107.9P32P32-G34 PolarHBondContact O-N 2.81Å
35A71.3Confident66.8Low82 Ų82154.4 Ų154.468%0.67878%0.776SS**  trans-52.3139.2178.100000110.3L37A35-L37 PolarHBondContact O-N 2.95Å
36P70.4Confident66.8Low105 Ų105153.9 Ų153.968%0.68277%0.773SS**  trans-57.9111163-1930.9000107.6H38P36-H38 VanDerWaalsContact C-N 3.27Å; P36-H38 PolarHBondContact O-N 2.82Å
37L65Low66.6Low159 Ų159150.8 Ų150.883%0.83277%0.769SS**  trans-66.494.3173.1-67.4177.3000107.4A35 R39A35-L37 PolarHBondContact O-N 2.95Å; L37-R39 PolarHBondContact O-N 2.9Å
38H65.1Low66.6Low157 Ų157143.9 Ų143.973%0.72775%0.752SS**  trans-60.9101.6171.7-71.5-22.2000108.3P36 R40P36-H38 VanDerWaalsContact C-N 3.27Å; P36-H38 PolarHBondContact O-N 2.82Å; H38-R40 PolarHBondContact O-N 2.81Å
39R67.6Low66.5Low234 Ų234146.7 Ų146.788%0.88375%0.751SS**  trans-70.843.1170-64.6-174.9178.9178.40111.8L37L37-R39 PolarHBondContact O-N 2.9Å
40R66.4Low66.4Low240 Ų240143.3 Ų143.391%0.90673%0.732SS**  trans-102.282.4174.7-73.7-172.7175.5-154.20.4108.4H38H38-R40 PolarHBondContact O-N 2.81Å
41G60.5Low66.3Low68 Ų68143.5 Ų143.570%0.70172%0.723SS**SBendtrans175.9-9.9174.900000117.7R43G41-R43 PolarHBondContact O-N 3.46Å
42L61.8Low66.2Low153 Ų153142 Ų14280%0.80172%0.718SS**SBendtrans-83.9-4.2-175.2-62.5178.2000114.8
43R64.9Low66.1Low256 Ų256142.9 Ų142.997%0.96671%0.712SS**SBendtrans-106.354.8-173.5-64.7-173.3-177.5-97.42.3113.6G41G41-R43 PolarHBondContact O-N 3.46Å
44G65.9Low66Low66 Ų66140.5 Ų140.568%0.6870%0.703SS**SBendtrans-161.5-12.4177.900000118.2
45R64.2Low65.9Low211 Ų211149.2 Ų149.280%0.79672%0.721SS**SBendtrans-124.25.5-178-60.9-173.6-176.9-166.90.7113.9A47 V48 R49R45-A47 PolarHBondContact O-N 3.33Å; R45-V48 PolarHBondContact O-N 2.88Å; R45-R49 WeakPolarHBondContact O-CB 3.47Å; R45-R49 PolarHBondContact O-N 3.12Å
46H66Low65.7Low147 Ų147155.7 Ų155.768%0.68173%0.728SS**Hα-helixtrans-64.7-42.9-173-165.3-4.9000112.4R49 A50H46-R49 PolarHBondContact O-N 3.47Å; H46-A50 PolarHBondContact O-N 2.96Å
47A62.7Low65.2Low76 Ų76159 Ų15963%0.62874%0.735SS**Hα-helixtrans-63.1-46.9178.500000112.1R45 R49 A50 V51R45-A47 PolarHBondContact O-N 3.33Å; A47-R49 VanDerWaalsContact C-N 3.29Å; A47-R49 PolarHBondContact O-N 3.18Å; A47-A50 VanDerWaalsContact O-N 3.14Å; A47-A50 PolarHBondContact O-N 3.14Å; A47-A50 WeakPolarHBondContact O-CB 3.38Å; A47-V51 WeakPolarHBondContact O-CG2 3.47Å; A47-V51 PolarHBondContact O-N 2.95Å
48V66.8Low65Low91 Ų91155.7 Ų155.755%0.55272%0.722SS**Hα-helixtrans-63.1-36.9177.7-179.30000111.6R45 V51 R52R45-V48 PolarHBondContact O-N 2.88Å; V48-V51 PolarHBondContact O-N 3.45Å; V48-R52 WeakPolarHBondContact O-CB 3.24Å; V48-R52 WeakPolarHBondContact O-CG 3.44Å; V48-R52 PolarHBondContact O-N 3.31Å
49R65.6Low64.9Low175 Ų175157.9 Ų157.966%0.6673%0.733SS**Hα-helixtrans-67.7-35.9175.7-134.5177.7-176.3-116.21.5112.1R45 H46 A47 Q53R45-R49 WeakPolarHBondContact O-CB 3.47Å; R45-R49 PolarHBondContact O-N 3.12Å; H46-R49 PolarHBondContact O-N 3.47Å; A47-R49 VanDerWaalsContact C-N 3.29Å; A47-R49 PolarHBondContact O-N 3.18Å; R49-Q53 VanDerWaalsContact O-N 3.12Å; R49-Q53 PolarHBondContact O-NE2 2.94Å; R49-Q53 PolarHBondContact O-N 3.43Å; R49-Q53 VanDerWaalsContact O-CG 3.24Å; R49-Q53 WeakPolarHBondContact O-CB 3.41Å; R49-Q53 WeakPolarHBondContact O-CG 3.44Å
50A65.1Low64.7Low42 Ų42153.7 Ų153.735%0.34773%0.728SS.*Hα-helixtrans-68.7-40.8174.300000111.7H46 A47 Q53 R54H46-A50 PolarHBondContact O-N 2.96Å; A47-A50 VanDerWaalsContact O-N 3.14Å; A47-A50 PolarHBondContact O-N 3.14Å; A47-A50 WeakPolarHBondContact O-CB 3.38Å; A50-Q53 PolarHBondContact O-N 3.36Å; A50-R54 WeakPolarHBondContact O-CB 3.47Å; A50-R54 PolarHBondContact O-N 3.03Å
51V69.3Low64.5Low97 Ų97145.8 Ų145.859%0.58872%0.722SS**Hα-helixtrans-63.8-44.4175.1173.20000111.5A47 V48 Q53 R54 R55A47-V51 WeakPolarHBondContact O-CG2 3.47Å; A47-V51 PolarHBondContact O-N 2.95Å; V48-V51 PolarHBondContact O-N 3.45Å; V51-Q53 VanDerWaalsContact C-N 3.28Å; V51-Q53 PolarHBondContact O-N 3.39Å; V51-R54 PolarHBondContact O-N 3.4Å; V51-R55 PolarHBondContact O-N 3.17Å; V51-R55 VanDerWaalsContact O-N 3.17Å
52R65.3Low64.3Low199 Ų199147.3 Ų147.375%0.75173%0.728SS**Hα-helixtrans-64.6-30176.5-76.7-179.9171.3-106.80113.4V48V48-R52 WeakPolarHBondContact O-CB 3.24Å; V48-R52 WeakPolarHBondContact O-CG 3.44Å; V48-R52 PolarHBondContact O-N 3.31Å
53Q67.1Low64.2Low128 Ų128145.7 Ų145.760%0.59874%0.736SS**Hα-helixtrans-80.6-37176.2-75.3173.858.600112.2R49 A50 V51 R55 R56R49-Q53 VanDerWaalsContact O-N 3.12Å; R49-Q53 PolarHBondContact O-NE2 2.94Å; R49-Q53 PolarHBondContact O-N 3.43Å; R49-Q53 VanDerWaalsContact O-CG 3.24Å; R49-Q53 WeakPolarHBondContact O-CB 3.41Å; R49-Q53 WeakPolarHBondContact O-CG 3.44Å; A50-Q53 PolarHBondContact O-N 3.36Å; V51-Q53 VanDerWaalsContact C-N 3.28Å; V51-Q53 PolarHBondContact O-N 3.39Å; Q53-R55 VanDerWaalsContact C-N 3.28Å; Q53-R55 PolarHBondContact O-N 3.24Å; Q53-R56 PolarHBondContact O-N 3.36Å
54R66.8Low64.2Low216 Ų216136.8 Ų136.882%0.81572%0.724SS**Hα-helixtrans-62.3-33.5173.9-91-176.9168.1-95.81.5113.2A50 V51 R56A50-R54 WeakPolarHBondContact O-CB 3.47Å; A50-R54 PolarHBondContact O-N 3.03Å; V51-R54 PolarHBondContact O-N 3.4Å; R54-R56 PolarHBondContact O-N 3.38Å
55R67.1Low63.9Low231 Ų231138.4 Ų138.487%0.87273%0.731SS**THydrogen-bonded Turntrans-80.510-177-152.3-175.8177.3-106.51.3113.9V51 Q53V51-R55 PolarHBondContact O-N 3.17Å; V51-R55 VanDerWaalsContact O-N 3.17Å; Q53-R55 VanDerWaalsContact C-N 3.28Å; Q53-R55 PolarHBondContact O-N 3.24Å
56R66.4Low63.5Low218 Ų218135.2 Ų135.282%0.82374%0.735SS**  trans-125.359.3179.3-151.8176.7-169.7179.11.8110.3Q53 R54Q53-R56 PolarHBondContact O-N 3.36Å; R54-R56 PolarHBondContact O-N 3.38Å
57E59.2Low62.8Low175 Ų175135.3 Ų135.382%0.81874%0.74SS**  trans-73.7129.7148.5-102.8162166.100107.6
58P61.5Low62.7Low89 Ų89143.4 Ų143.458%0.57876%0.755SS**  trans-72.3131.5171.429.2-29.8000109.5D60P58-D60 PolarHBondContact O-N 2.89Å
59E61.8Low62.2Low204 Ų204142.9 Ų142.995%0.95376%0.76SS**  trans-65.183156.1-76.6167.1151.800107.7
60D64.9Low61.9Low145 Ų145137.6 Ų137.678%0.77576%0.76SS**  trans-87.8105.5167.3-81-28.5000109P58P58-D60 PolarHBondContact O-N 2.89Å
61G61.3Low61Low75 Ų75145.4 Ų145.477%0.77379%0.789SS**SBendtrans103.888.3147.500000116.9
62A56.8Low59.9Low100 Ų100149.2 Ų149.283%0.82683%0.831SS**  156.367120.200000111.4G64A62-G64 PolarHBondContact O-N 3.24Å
63A60.5Low59.6Low118 Ų118146.8 Ų146.898%0.97584%0.835SS**SBendtrans-76.494.7151.400000107.4
64G64.9Low59.2Low70 Ų70147.7 Ų147.772%0.72285%0.847SS**  trans142.283.3166.600000115.5A62A62-G64 PolarHBondContact O-N 3.24Å
65A57.8Low58.8Low99 Ų99143.9 Ų143.982%0.81885%0.849SS**  trans-154.184.6143.100000107.4D67A65-D67 VanDerWaalsContact C-N 3.34Å; A65-D67 PolarHBondContact O-N 3.17Å; A65-D67 VanDerWaalsContact O-N 3.17Å
66V56.8Low58.3Low145 Ų145138.8 Ų138.888%0.87985%0.848SS**  trans-73.395.2161.6-78.40000106.7R68V66-R68 PolarHBondContact O-N 3.16Å; V66-R68 VanDerWaalsContact O-N 3.16Å
67D52.1Low57.8Low149 Ų149133.9 Ų133.980%0.79785%0.849SS**  trans-78.298.4169.5-155.57.6000108A65A65-D67 VanDerWaalsContact C-N 3.34Å; A65-D67 PolarHBondContact O-N 3.17Å; A65-D67 VanDerWaalsContact O-N 3.17Å
68R59.3Low57.7Low246 Ų246131.1 Ų131.193%0.92885%0.852SS**  trans-86.294.9159.4-91.7-168.1-168.2140.91.4106.9V66V66-R68 PolarHBondContact O-N 3.16Å; V66-R68 VanDerWaalsContact O-N 3.16Å
69A56.6Low57.5Low79 Ų79134.1 Ų134.165%0.65387%0.871SS**  trans-128.3114148.100000103.9
70G59.7Low57.1Low65 Ų65128.8 Ų128.867%0.6787%0.865SS**  84.1105.55500000107.6
71E45.9Very low56.5Low206 Ų206127.4 Ų127.496%0.96387%0.872SS**  trans73133.9165.7-54.817615300115.1
72A46.3Very low56.1Low177 Ų177132.2 Ų132.2100%1.46388%0.881SS**  cis-150.1024.300000111.8

Retrieved 72 of 72 residues in 31.7 ms (Link to these results)