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NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

AlphaFold DB , UniProt , Accession A0A068BGR9, Species MOUSE (Mus musculus, Mouse), Gene Ndufa7, Length 113 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M72.3Confident92.3Very high190 Ų190112.3 Ų112.394%0.93659%0.594SS**  0147.90-69.4-165.2-80.300108.4S3 Y28M1-S3 PolarHBondContact O-N 3.4Å; M1-Y28 VanDerWaalsContact C-CD1 3.45Å; M1-Y28 VanDerWaalsContact N-CD1 3.3Å; M1-Y28 WeakPolarHBondContact O-CE1 3.46Å
2A85.9Confident92.6Very high42 Ų42109.3 Ų109.335%0.34757%0.569SS.*  trans-68.3125.8171.400000109.2L24 Y28A2-L24 HydrophobicContact CB-CD1 3.91Å; A2-Y28 WeakPolarHBondContact CA-OH 3.43Å; A2-Y28 HydrophobicContact CB-CE2 3.83Å
3S91.1Very high92.9Very high113 Ų113102.9 Ų102.979%0.7954%0.536SS*.  trans-114.60.9-167.155.80000114.8M1 T5M1-S3 PolarHBondContact O-N 3.4Å; S3-T5 PolarHBondContact O-N 3.45Å
4A91.9Very high93.2Very high45 Ų45110.8 Ų110.837%0.37256%0.555SS.*  trans-61.3135.3179.800000111.1
5T96.1Very high93.5Very high81 Ų81108.3 Ų108.350%0.49756%0.559SS.*  trans-67.7153.8174.664.30000110.4S3 V7 I8 Q9S3-T5 PolarHBondContact O-N 3.45Å; T5-V7 PolarHBondContact O-N 3.14Å; T5-V7 VanDerWaalsContact O-N 3.13Å; T5-I8 PolarHBondContact O-N 3.13Å; T5-I8 VanDerWaalsContact O-N 3.14Å; T5-I8 WeakPolarHBondContact OG1-CG1 3.44Å; T5-Q9 PolarHBondContact O-N 2.93Å
6R95.1Very high93.6Very high217 Ų217104.4 Ų104.482%0.81954%0.544SS*.Hα-helixtrans-57.2-32.3-176.7-66.8-175.8179.4-178.70.1113.2K10R6-K10 WeakPolarHBondContact O-CG 3.25Å; R6-K10 PolarHBondContact O-N 3.14Å; R6-K10 VanDerWaalsContact O-N 3.14Å
7V97.1Very high93.8Very high116 Ų116102.6 Ų102.670%0.70356%0.557SS**Hα-helixtrans-69.4-48.9178.3179.30000110.8T5 Q9 K10 L11T5-V7 PolarHBondContact O-N 3.14Å; T5-V7 VanDerWaalsContact O-N 3.13Å; V7-Q9 VanDerWaalsContact C-N 3.31Å; V7-Q9 PolarHBondContact O-N 2.72Å; V7-K10 PolarHBondContact O-N 2.83Å; V7-L11 PolarHBondContact O-N 3.47Å
8I96.9Very high93.9Very high104 Ų104104.1 Ų104.153%0.53356%0.559SS.*Hα-helixtrans-64.6-38.9178.6-64.6175.1000110.6T5 K10 L11 R12T5-I8 PolarHBondContact O-N 3.13Å; T5-I8 VanDerWaalsContact O-N 3.14Å; T5-I8 WeakPolarHBondContact OG1-CG1 3.44Å; I8-K10 PolarHBondContact O-N 3.44Å; I8-L11 PolarHBondContact O-N 3.44Å; I8-R12 WeakPolarHBondContact O-CB 3.44Å; I8-R12 PolarHBondContact O-N 3.15Å
9Q95.2Very high94Very high52 Ų52103.3 Ų103.324%0.24356%0.555CS.*Hα-helixtrans-59.7-45.5175.9-173.5-172.6-18.900111.8T5 V7 R12 N13 Q21T5-Q9 PolarHBondContact O-N 2.93Å; V7-Q9 VanDerWaalsContact C-N 3.31Å; V7-Q9 PolarHBondContact O-N 2.72Å; Q9-R12 PolarHBondContact O-N 3.07Å; Q9-N13 WeakPolarHBondContact O-CB 3.29Å; Q9-N13 VanDerWaalsContact O-CG 3.29Å; Q9-N13 PolarHBondContact O-N 3.42Å; Q9-N13 PolarHBondContact O-OD1 3.27Å; Q9-Q21 HydrophobicContact CG-CB 4.47Å; Q9-Q21 VanDerWaalsContact NE2-CB 3.29Å
10K95.9Very high94Very high160 Ų160100.7 Ų100.770%0.69654%0.541SS*.Hα-helixtrans-64.4-44.4177.4-78.2-174173.2-171.20112.3R6 V7 I8 R12 N13 W14R6-K10 WeakPolarHBondContact O-CG 3.25Å; R6-K10 PolarHBondContact O-N 3.14Å; R6-K10 VanDerWaalsContact O-N 3.14Å; V7-K10 PolarHBondContact O-N 2.83Å; I8-K10 PolarHBondContact O-N 3.44Å; K10-R12 VanDerWaalsContact C-N 3.35Å; K10-R12 PolarHBondContact O-N 3.32Å; K10-N13 PolarHBondContact O-N 3.48Å; K10-W14 VanDerWaalsContact O-CB 3.32Å; K10-W14 WeakPolarHBondContact O-CB 3.26Å; K10-W14 PolarHBondContact O-N 3.47Å
11L97.6Very high94Very high115 Ų11598.6 Ų98.660%0.60253%0.528SS*.Hα-helixtrans-59.2-46.8177.2-177.3153.6000111.2V7 I8 W14 A15V7-L11 PolarHBondContact O-N 3.47Å; I8-L11 PolarHBondContact O-N 3.44Å; L11-W14 PolarHBondContact O-N 2.96Å; L11-A15 WeakPolarHBondContact O-CB 3.15Å; L11-A15 PolarHBondContact O-N 3.4Å
12R96.4Very high94.9Very high76 Ų7693.2 Ų93.229%0.28751%0.513SS..Hα-helixtrans-61.6-49178.7-176.5-167.564.8-164.5-1.8111.9I8 Q9 K10 W14 A15 S16 L20I8-R12 WeakPolarHBondContact O-CB 3.44Å; I8-R12 PolarHBondContact O-N 3.15Å; Q9-R12 PolarHBondContact O-N 3.07Å; K10-R12 VanDerWaalsContact C-N 3.35Å; K10-R12 PolarHBondContact O-N 3.32Å; R12-W14 VanDerWaalsContact C-N 3.32Å; R12-W14 PolarHBondContact O-N 2.77Å; R12-A15 PolarHBondContact O-N 3.44Å; R12-S16 WeakPolarHBondContact O-CB 3.29Å; R12-S16 PolarHBondContact O-N 2.99Å; R12-S16 PolarHBondContact O-OG 2.94Å; R12-L20 HydrophobicContact CG-CD1 3.98Å
13N96.5Very high95.3Very high27 Ų27100.1 Ų100.114%0.14454%0.535CS..Hα-helixtrans-62.9-41.9-179.3-73.55.1000110.8Q9 K10 S16 G17 Q18 D19 L20Q9-N13 WeakPolarHBondContact O-CB 3.29Å; Q9-N13 VanDerWaalsContact O-CG 3.29Å; Q9-N13 PolarHBondContact O-N 3.42Å; Q9-N13 PolarHBondContact O-OD1 3.27Å; K10-N13 PolarHBondContact O-N 3.48Å; N13-S16 PolarHBondContact O-N 3.47Å; N13-S16 PolarHBondContact O-OG 3.38Å; N13-G17 PolarHBondContact O-N 3.18Å; N13-Q18 WeakPolarHBondContact CA-O 3.44Å; N13-Q18 PolarHBondContact O-N 3.1Å; N13-D19 PolarHBondContact ND2-OD1 3.04Å; N13-L20 PolarHBondContact OD1-N 3.46Å
14W96.8Very high95.5Very high213 Ų21397.5 Ų97.581%0.80751%0.512SS*.Hα-helixtrans-60.8-49.3174.7176.179.3000112.5K10 L11 R12 S16 G17K10-W14 VanDerWaalsContact O-CB 3.32Å; K10-W14 WeakPolarHBondContact O-CB 3.26Å; K10-W14 PolarHBondContact O-N 3.47Å; L11-W14 PolarHBondContact O-N 2.96Å; R12-W14 VanDerWaalsContact C-N 3.32Å; R12-W14 PolarHBondContact O-N 2.77Å; W14-S16 PolarHBondContact O-N 3.48Å; W14-G17 PolarHBondContact O-N 3.02Å
15A97.6Very high95.7Very high73 Ų73104.6 Ų104.660%0.60354%0.537SS*.Hα-helixtrans-63.2-30.6179.700000113L11 R12L11-A15 WeakPolarHBondContact O-CB 3.15Å; L11-A15 PolarHBondContact O-N 3.4Å; R12-A15 PolarHBondContact O-N 3.44Å
16S96Very high95.6Very high47 Ų47106.5 Ų106.533%0.32954%0.544SS..Hα-helixtrans-87.3-12.8178.771.30000114.9R12 N13 W14 Q18R12-S16 WeakPolarHBondContact O-CB 3.29Å; R12-S16 PolarHBondContact O-N 2.99Å; R12-S16 PolarHBondContact O-OG 2.94Å; N13-S16 PolarHBondContact O-N 3.47Å; N13-S16 PolarHBondContact O-OG 3.38Å; W14-S16 PolarHBondContact O-N 3.48Å; S16-Q18 PolarHBondContact O-N 3.49Å; S16-Q18 PolarHBondContact OG-N 3.03Å; S16-Q18 PolarHBondContact OG-O 2.94Å; S16-Q18 VanDerWaalsContact OG-O 3.1Å
17G96.7Very high95.6Very high73 Ų73104.8 Ų104.875%0.75354%0.537SS*.THydrogen-bonded Turntrans71.67.4-175.800000115.6N13 W14N13-G17 PolarHBondContact O-N 3.18Å; W14-G17 PolarHBondContact O-N 3.02Å
18Q96Very high95.5Very high129 Ų129102.4 Ų102.460%0.60352%0.516SS*.SBendtrans-149.8162.6-177.860.4-177.4-30.500112.7N13 S16 L20N13-Q18 WeakPolarHBondContact CA-O 3.44Å; N13-Q18 PolarHBondContact O-N 3.1Å; S16-Q18 PolarHBondContact O-N 3.49Å; S16-Q18 PolarHBondContact OG-N 3.03Å; S16-Q18 PolarHBondContact OG-O 2.94Å; S16-Q18 VanDerWaalsContact OG-O 3.1Å; Q18-L20 HydrophobicContact CG-CD2 3.97Å; Q18-L20 HydrophobicContact CG-CG 4.39Å; Q18-L20 PolarHBondContact O-N 3.37Å; Q18-L20 VanDerWaalsContact O-N 3.15Å
19D94.9Very high95.4Very high90 Ų90105.7 Ų105.748%0.48153%0.529SS..  trans-81.194.6176.5-175.718.2000112.1N13 Q21N13-D19 PolarHBondContact ND2-OD1 3.04Å; D19-Q21 PolarHBondContact O-N 3.33Å; D19-Q21 VanDerWaalsContact OD1-CB 3.29Å; D19-Q21 WeakPolarHBondContact OD1-CB 3.43Å; D19-Q21 PolarHBondContact OD1-N 3.37Å
20L94.1Very high95.4Very high51 Ų51109.3 Ų109.327%0.26755%0.546SS..THydrogen-bonded Turntrans-73.3-15.3176.4-63.4177.5000113.1R12 N13 Q18 A22 K23 L24R12-L20 HydrophobicContact CG-CD1 3.98Å; N13-L20 PolarHBondContact OD1-N 3.46Å; Q18-L20 HydrophobicContact CG-CD2 3.97Å; Q18-L20 HydrophobicContact CG-CG 4.39Å; Q18-L20 PolarHBondContact O-N 3.37Å; Q18-L20 VanDerWaalsContact O-N 3.15Å; L20-A22 VanDerWaalsContact C-N 3.32Å; L20-K23 CarbonylContact O-C 3.36Å; L20-K23 PolarHBondContact O-N 2.94Å; L20-L24 VanDerWaalsContact O-CD2 3.29Å; L20-L24 WeakPolarHBondContact O-CD2 3.42Å; L20-L24 PolarHBondContact O-N 3.43Å
21Q93.1Very high95.4Very high57 Ų57104.8 Ų104.827%0.26653%0.529SS..THydrogen-bonded Turntrans-71.9-30.1179.2-165.371600111.9Q9 D19 K23Q9-Q21 HydrophobicContact CG-CB 4.47Å; Q9-Q21 VanDerWaalsContact NE2-CB 3.29Å; D19-Q21 PolarHBondContact O-N 3.33Å; D19-Q21 VanDerWaalsContact OD1-CB 3.29Å; D19-Q21 WeakPolarHBondContact OD1-CB 3.43Å; D19-Q21 PolarHBondContact OD1-N 3.37Å; Q21-K23 VanDerWaalsContact C-N 3.34Å
22A92.6Very high95.4Very high76 Ų76103 Ų10363%0.62853%0.531SS*.THydrogen-bonded Turntrans-68.1-32176.500000113L20L20-A22 VanDerWaalsContact C-N 3.32Å
23K94.4Very high95.4Very high187 Ų187107.8 Ų107.881%0.81355%0.554SS**SBendtrans-132.574.1-178.3-67-177.7-179.2176.80110.7L20 Q21L20-K23 CarbonylContact O-C 3.36Å; L20-K23 PolarHBondContact O-N 2.94Å; Q21-K23 VanDerWaalsContact C-N 3.34Å
24L95.1Very high95.4Very high58 Ų58116.6 Ų116.630%0.30459%0.585SS.*  trans-73.3143178.3-69.2169.8000111.6A2 L20 Y28A2-L24 HydrophobicContact CB-CD1 3.91Å; L20-L24 VanDerWaalsContact O-CD2 3.29Å; L20-L24 WeakPolarHBondContact O-CD2 3.42Å; L20-L24 PolarHBondContact O-N 3.43Å; L24-Y28 HydrophobicContact CD1-CD2 4.45Å; L24-Y28 HydrophobicContact CD1-CE2 3.76Å
25Q94.7Very high95.5Very high194 Ų194112.4 Ų112.491%0.90758%0.583SS**SBendtrans-73.3-30.5175.5-64.3170-12.700112.2
26L95.4Very high95.5Very high121 Ų121114.5 Ų114.563%0.63458%0.58SS**SBendtrans-85.1137177.1-62.7179.6000110.1Y28L26-Y28 HydrophobicContact CB-CE2 4.29Å
27R95.1Very high95.6Very high181 Ų181116.9 Ų116.968%0.68360%0.595SS**  trans-88.3137.7-179.9-64.2171.2-65.3180-4.3110.4E30 I31R27-E30 VanDerWaalsContact CA-OE1 3.24Å; R27-E30 WeakPolarHBondContact CA-OE1 3.32Å; R27-I31 HydrophobicContact CB-CD1 4.31Å; R27-I31 HydrophobicContact CB-CG2 3.85Å; R27-I31 HydrophobicContact CG-CG2 3.97Å
28Y94.3Very high95.6Very high67 Ų67119.4 Ų119.426%0.26360%0.598SS.*  trans-118.2-119.9175.2-59.5-76.5000111.6M1 A2 L24 L26 E30M1-Y28 VanDerWaalsContact C-CD1 3.45Å; M1-Y28 VanDerWaalsContact N-CD1 3.3Å; M1-Y28 WeakPolarHBondContact O-CE1 3.46Å; A2-Y28 WeakPolarHBondContact CA-OH 3.43Å; A2-Y28 HydrophobicContact CB-CE2 3.83Å; L24-Y28 HydrophobicContact CD1-CD2 4.45Å; L24-Y28 HydrophobicContact CD1-CE2 3.76Å; L26-Y28 HydrophobicContact CB-CE2 4.29Å; Y28-E30 VanDerWaalsContact CA-OE2 3.25Å; Y28-E30 WeakPolarHBondContact CA-OE2 3.35Å; Y28-E30 VanDerWaalsContact CB-OE2 3.26Å; Y28-E30 WeakPolarHBondContact CB-OE2 3.24Å; Y28-E30 VanDerWaalsContact N-CD 3.3Å; Y28-E30 PolarHBondContact N-OE1 3.2Å; Y28-E30 PolarHBondContact N-OE2 3.04Å
29Q94.9Very high95.7Very high172 Ų172118.5 Ų118.580%0.80460%0.603SS**SBendtrans-94.8-4.8-173.1-62.6-63-15.600112.6I31Q29-I31 PolarHBondContact O-N 3.28Å
30E94.8Very high95.8Very high129 Ų129124.1 Ų124.160%0.60362%0.623SS**SBendtrans-73.6-13.3178.570.5-74.9172.100113.3R27 Y28R27-E30 VanDerWaalsContact CA-OE1 3.24Å; R27-E30 WeakPolarHBondContact CA-OE1 3.32Å; Y28-E30 VanDerWaalsContact CA-OE2 3.25Å; Y28-E30 WeakPolarHBondContact CA-OE2 3.35Å; Y28-E30 VanDerWaalsContact CB-OE2 3.26Å; Y28-E30 WeakPolarHBondContact CB-OE2 3.24Å; Y28-E30 VanDerWaalsContact N-CD 3.3Å; Y28-E30 PolarHBondContact N-OE1 3.2Å; Y28-E30 PolarHBondContact N-OE2 3.04Å
31I96.4Very high96Very high65 Ų65128.5 Ų128.533%0.33365%0.646SS.*SBendtrans-86154.217866.3171.6000111.8R27 Q29R27-I31 HydrophobicContact CB-CD1 4.31Å; R27-I31 HydrophobicContact CB-CG2 3.85Å; R27-I31 HydrophobicContact CG-CG2 3.97Å; Q29-I31 PolarHBondContact O-N 3.28Å
32A96.7Very high96.2Very high77 Ų77131.6 Ų131.664%0.63667%0.671SS**PPolyproline II helixtrans-56.4145.9173.700000111.7
33K97.1Very high96.4Very high177 Ų177133 Ų13377%0.7767%0.672SS**PPolyproline II helixtrans-58.7155.9176-65.5-178-179.2178.60111.2Q36K33-Q36 PolarHBondContact O-NE2 3.37Å
34R97.4Very high96.6Very high212 Ų212125.8 Ų125.880%0.865%0.65SS**SBendtrans-71.1-35.6176.1-62.6-60.8176.4144.5-1.2112.5
35T97.6Very high96.6Very high124 Ų124128.4 Ų128.476%0.76167%0.671SS**SBendtrans-93.4124.2174.7-49.40000109.3
36Q97.8Very high96.7Very high117 Ų117121.5 Ų121.555%0.54764%0.644SS.*  trans-111.4149.5179.1-65-62.3-31.900110.1K33K33-Q36 PolarHBondContact O-NE2 3.37Å
37P97.9Very high96.8Very high98 Ų98122.3 Ų122.364%0.63664%0.644SS**PPolyproline II helixtrans-64.1154.4172.129.3-34.7000110.6
38P97.4Very high96.8Very high125 Ų125119.9 Ų119.981%0.81264%0.638SS**PPolyproline II helixtrans-62.2130.7177.625.9-33.7000110.7
39P97.3Very high97Very high110 Ų110125.6 Ų125.671%0.71467%0.672SS**PPolyproline II helixtrans-80.6152.5179.132.3-34.7000112.1L41P39-L41 HydrophobicContact CB-CD2 4.47Å
40K97.7Very high97Very high208 Ų208121.8 Ų121.890%0.90467%0.665SS**  trans-117.395.5165.6-175.7179.3-179.6179.80108.9
41L97.4Very high97.1Very high144 Ų144122.3 Ų122.375%0.75467%0.672SS**PPolyproline II helixtrans-73.2144.2-176.3-61.9178.5000111.4P39P39-L41 HydrophobicContact CB-CD2 4.47Å
42P97.9Very high97.1Very high121 Ų121121.4 Ų121.479%0.78667%0.667SS**PPolyproline II helixtrans-69155.1173.430.8-35.1000111
43V98.1Very high97Very high107 Ų107125.3 Ų125.365%0.64867%0.667SS**PPolyproline II helixtrans-84.6149.3175.3-650000111.3H47V43-H47 HydrophobicContact CB-CB 3.84Å; V43-H47 HydrophobicContact CG2-CB 3.88Å
44G97.3Very high97Very high34 Ų34122.6 Ų122.635%0.35165%0.653SS.*PPolyproline II helixtrans-72.4168.7176.400000113.6S46 H47G44-S46 PolarHBondContact O-N 3.18Å; G44-H47 PolarHBondContact N-ND1 2.68Å; G44-H47 PolarHBondContact O-N 3.34Å; G44-H47 VanDerWaalsContact O-N 3.08Å; G44-H47 PolarHBondContact O-ND1 3.19Å
45P96.5Very high96.9Very high114 Ų114117.3 Ų117.374%0.7465%0.647SS**THydrogen-bonded Turntrans-63.3-21.3-170.125.2-35.8000114.9H47 K48P45-H47 VanDerWaalsContact C-N 3.34Å; P45-K48 VanDerWaalsContact O-CE 3.26Å; P45-K48 WeakPolarHBondContact O-CE 3.26Å
46S96.1Very high96.8Very high48 Ų48116.1 Ų116.134%0.33664%0.64SS.*THydrogen-bonded Turntrans-89.910.7179.3-52.20000113.6G44 K48 N52G44-S46 PolarHBondContact O-N 3.18Å; S46-K48 PolarHBondContact O-N 3.08Å; S46-N52 PolarHBondContact O-ND2 3.27Å
47H96.6Very high96.7Very high138 Ų138115.7 Ų115.764%0.63963%0.633SS**  trans-87.857.4170.8-66.178.1000110.5V43 G44 P45V43-H47 HydrophobicContact CB-CB 3.84Å; V43-H47 HydrophobicContact CG2-CB 3.88Å; G44-H47 PolarHBondContact N-ND1 2.68Å; G44-H47 PolarHBondContact O-N 3.34Å; G44-H47 VanDerWaalsContact O-N 3.08Å; G44-H47 PolarHBondContact O-ND1 3.19Å; P45-H47 VanDerWaalsContact C-N 3.34Å
48K96.5Very high96.6Very high130 Ų130111.4 Ų111.457%0.56561%0.605SS**  trans-107.4139.2179.3-65.4176.5-177.4179.60110P45 S46 N52P45-K48 VanDerWaalsContact O-CE 3.26Å; P45-K48 WeakPolarHBondContact O-CE 3.26Å; S46-K48 PolarHBondContact O-N 3.08Å; K48-N52 HydrophobicContact CB-CB 3.87Å; K48-N52 PolarHBondContact O-ND2 3.06Å
49L96.8Very high96.5Very high187 Ų187107.4 Ų107.498%0.97959%0.586SS**SBendtrans-76.6-28-179.9-63.1176.2000113.1
50S96.6Very high96.4Very high93 Ų93110 Ų11065%0.6558%0.582SS**SBendtrans-136.4160.8-179.562.30000110.8N52S50-N52 VanDerWaalsContact C-N 3.34Å; S50-N52 PolarHBondContact O-N 3.06Å
51N95.6Very high96.3Very high139 Ų139109.4 Ų109.474%0.74357%0.574SS**SBendtrans51.449179.5-163.423.7000113.4
52N95.9Very high96.2Very high46 Ų46109.1 Ų109.125%0.24657%0.569CS.*  trans-139.645-174.3-174.625.4000111.6S46 K48 S50 Y54 R57S46-N52 PolarHBondContact O-ND2 3.27Å; K48-N52 HydrophobicContact CB-CB 3.87Å; K48-N52 PolarHBondContact O-ND2 3.06Å; S50-N52 VanDerWaalsContact C-N 3.34Å; S50-N52 PolarHBondContact O-N 3.06Å; N52-Y54 PolarHBondContact O-N 3.35Å; N52-R57 PolarHBondContact OD1-NE 3.49Å
53Y96.3Very high96Very high160 Ų160108.7 Ų108.763%0.62756%0.564SS**  trans-66.7132.9176.9-62.1-81000109.8C55 T56Y53-C55 PolarHBondContact O-N 3.41Å; Y53-T56 PolarHBondContact O-N 3.32Å; Y53-T56 PolarHBondContact O-OG1 3.48Å
54Y96.3Very high95.9Very high119 Ų119109.1 Ų109.147%0.46757%0.566SS.*G310 helixtrans-63.3-33.8-179.9-175.6-106.9000111.9N52 T56 R57 D58 R60N52-Y54 PolarHBondContact O-N 3.35Å; Y54-T56 PolarHBondContact O-N 3.43Å; Y54-R57 PolarHBondContact O-N 3.33Å; Y54-R57 VanDerWaalsContact O-N 3.13Å; Y54-D58 HydrophobicContact CD1-CB 4.19Å; Y54-D58 HydrophobicContact CE1-CB 3.87Å; Y54-D58 WeakPolarHBondContact CE1-OD2 3.16Å; Y54-D58 PolarHBondContact O-N 2.99Å; Y54-D58 VanDerWaalsContact O-N 3.08Å; Y54-R60 PolarHBondContact OH-NH2 3.05Å
55C95.3Very high95.8Very high102 Ų102112.6 Ų112.669%0.68958%0.583SS**G310 helixtrans-60.7-27.9-179.459.20000113.9Y53 R57Y53-C55 PolarHBondContact O-N 3.41Å; C55-R57 VanDerWaalsContact C-N 3.3Å; C55-R57 PolarHBondContact O-N 3.3Å
56T95.6Very high95.6Very high98 Ų98112.7 Ų112.760%0.60158%0.583SS**G310 helixtrans-84.5-3.1-179.364.10000113.4Y53 Y54Y53-T56 PolarHBondContact O-N 3.32Å; Y53-T56 PolarHBondContact O-OG1 3.48Å; Y54-T56 PolarHBondContact O-N 3.43Å
57R95Very high95.3Very high109 Ų109115.5 Ų115.541%0.41160%0.603SS.*SBendtrans-137.613.7-178.763.7175.6179.677-1.2113N52 Y54 C55 G59N52-R57 PolarHBondContact OD1-NE 3.49Å; Y54-R57 PolarHBondContact O-N 3.33Å; Y54-R57 VanDerWaalsContact O-N 3.13Å; C55-R57 VanDerWaalsContact C-N 3.3Å; C55-R57 PolarHBondContact O-N 3.3Å; R57-G59 VanDerWaalsContact C-N 3.3Å; R57-G59 PolarHBondContact O-N 3.22Å
58D96.3Very high94.9Very high7 Ų7115.4 Ų115.44%0.03761%0.606CS.*  trans-81.178.1178.4-1701.5000109.7Y54 R60 R61 E62Y54-D58 HydrophobicContact CD1-CB 4.19Å; Y54-D58 HydrophobicContact CE1-CB 3.87Å; Y54-D58 WeakPolarHBondContact CE1-OD2 3.16Å; Y54-D58 PolarHBondContact O-N 2.99Å; Y54-D58 VanDerWaalsContact O-N 3.08Å; D58-R60 PolarHBondContact O-N 3.08Å; D58-R60 VanDerWaalsContact O-N 3.08Å; D58-R60 WeakPolarHBondContact OD1-CB 3.39Å; D58-R60 PolarHBondContact OD1-N 3.13Å; D58-R60 IonicContact OD1-NE 3.86Å; D58-R60 IonicContact OD1-NH2 3.12Å; D58-R60 IonicContact OD2-NH2 3.99Å; D58-R60 PolarHBondContact OD2-NH2 3.46Å; D58-R60 VanDerWaalsContact OD2-NH2 3.12Å; D58-R61 HydrophobicContact CB-CB 4.45Å; D58-R61 HydrophobicContact CB-CG 4.5Å; D58-R61 PolarHBondContact O-N 3.12Å; D58-R61 WeakPolarHBondContact OD2-CD 3.09Å; D58-R61 VanDerWaalsContact OD2-CG 3.27Å; D58-R61 WeakPolarHBondContact OD2-CG 3.33Å; D58-R61 IonicContact OD2-NE 3.62Å; D58-R61 PolarHBondContact OD2-NE 3.33Å; D58-R61 VanDerWaalsContact OD2-NE 3.07Å; D58-E62 PolarHBondContact O-N 3.45Å
59G95.2Very high94.4Very high41 Ų41117.3 Ų117.342%0.42362%0.62SS.*THydrogen-bonded Turntrans-59.3-1917800000114R57 R61 E62R57-G59 VanDerWaalsContact C-N 3.3Å; R57-G59 PolarHBondContact O-N 3.22Å; G59-R61 VanDerWaalsContact C-N 3.26Å; G59-R61 PolarHBondContact O-N 3.07Å; G59-E62 PolarHBondContact O-N 3.35Å
60R96.3Very high93.9Very high165 Ų165116.1 Ų116.162%0.62361%0.612SS**THydrogen-bonded Turntrans-67.2-29.7172.9179-170.558.4-151.5-16.1111.6Y54 D58Y54-R60 PolarHBondContact OH-NH2 3.05Å; D58-R60 PolarHBondContact O-N 3.08Å; D58-R60 VanDerWaalsContact O-N 3.08Å; D58-R60 WeakPolarHBondContact OD1-CB 3.39Å; D58-R60 PolarHBondContact OD1-N 3.13Å; D58-R60 IonicContact OD1-NE 3.86Å; D58-R60 IonicContact OD1-NH2 3.12Å; D58-R60 IonicContact OD2-NH2 3.99Å; D58-R60 PolarHBondContact OD2-NH2 3.46Å; D58-R60 VanDerWaalsContact OD2-NH2 3.12Å
61R94.6Very high93.2Very high195 Ų195115 Ų11574%0.73660%0.604SS**THydrogen-bonded Turntrans-89.8-11.1177.5-70.6178.9-176.3-89.50.5113.6D58 G59D58-R61 HydrophobicContact CB-CB 4.45Å; D58-R61 HydrophobicContact CB-CG 4.5Å; D58-R61 PolarHBondContact O-N 3.12Å; D58-R61 WeakPolarHBondContact OD2-CD 3.09Å; D58-R61 VanDerWaalsContact OD2-CG 3.27Å; D58-R61 WeakPolarHBondContact OD2-CG 3.33Å; D58-R61 IonicContact OD2-NE 3.62Å; D58-R61 PolarHBondContact OD2-NE 3.33Å; D58-R61 VanDerWaalsContact OD2-NE 3.07Å; G59-R61 VanDerWaalsContact C-N 3.26Å; G59-R61 PolarHBondContact O-N 3.07Å
62E95.2Very high92.4Very high139 Ų139114 Ų11465%0.6561%0.608SS**SBendtrans-76.8-12.8172.5-65-179.4171.100112.3D58 G59 V64D58-E62 PolarHBondContact O-N 3.45Å; G59-E62 PolarHBondContact O-N 3.35Å; E62-V64 PolarHBondContact O-N 2.92Å
63V95Very high91.5Very high112 Ų112119.7 Ų119.768%0.67963%0.633SS**  trans-68.6121.8176.8-177.20000110.1
64V95.3Very high89.8Confident116 Ų116121.5 Ų121.570%0.70364%0.644SS**  trans-108.5149.6176.1-176.90000108.9E62E62-V64 PolarHBondContact O-N 2.92Å
65P94.7Very high88.1Confident107 Ų107120.4 Ų120.470%0.69566%0.659SS**PPolyproline II helixtrans-51.5152.5168.2-27.435.9000112.5
66P92.9Very high86.3Confident116 Ų116123.4 Ų123.475%0.75367%0.668SS**PPolyproline II helixtrans-62.9142.9-177.726.9-35.2000111.9I68P66-I68 PolarHBondContact O-N 3.43Å
67S88.8Confident84.4Confident107 Ų107125.2 Ų125.275%0.74868%0.678SS**PPolyproline II helixtrans-71123.7173.758.30000111
68I88.2Confident82.3Confident136 Ų136125.9 Ų125.970%0.69770%0.7SS**  trans-90.7111.4179.5-56.7172.3000109.1P66P66-I68 PolarHBondContact O-N 3.43Å
69I86.8Confident80Confident170 Ų170128.6 Ų128.687%0.87273%0.73SS**SBendtrans-82.8-37-177.5-58.3171.9000111.6
70M85.7Confident77.7Confident162 Ų162136.5 Ų136.580%0.79875%0.752SS**  trans-138.7129.5178.8-174-83.4-177.100108.7
71S81.4Confident75.1Confident68 Ų68133.4 Ų133.448%0.47676%0.762SS.*  trans-139.7147.7172.455.40000109.6Q73S71-Q73 VanDerWaalsContact C-N 3.3Å; S71-Q73 PolarHBondContact OG-O 3.08Å; S71-Q73 VanDerWaalsContact OG-O 3.06Å
72S80.4Confident72.7Confident120 Ų120130.7 Ų130.784%0.83977%0.768SS**SBendtrans-74.2-22.3176.752.30000112.9
73Q76.1Confident70.2Confident165 Ų165133.1 Ų133.177%0.77178%0.779SS**SBendtrans-99.3115.6176-65.5178.6-17.500109.3S71 A75S71-Q73 VanDerWaalsContact C-N 3.3Å; S71-Q73 PolarHBondContact OG-O 3.08Å; S71-Q73 VanDerWaalsContact OG-O 3.06Å; Q73-A75 PolarHBondContact O-N 3.29Å
74K60.1Low67.6Low198 Ų198133.4 Ų133.486%0.86179%0.786SS**  trans-67.7112.6177.6-70.2-174.4179.6-170.80110.2L76K74-L76 PolarHBondContact O-N 3.35Å
75A61.9Low65.1Low95 Ų95132.3 Ų132.379%0.78578%0.783SS**  trans-73.2110.416200000108.6Q73 V77Q73-A75 PolarHBondContact O-N 3.29Å; A75-V77 PolarHBondContact O-N 3.29Å
76L56.6Low62.7Low166 Ų166132.4 Ų132.487%0.86979%0.793SS**  trans-69.6119.7173.1-70.9167.3000108.8K74 S78K74-L76 PolarHBondContact O-N 3.35Å; L76-S78 PolarHBondContact O-N 3.33Å
77V56.4Low60.4Low135 Ų135135 Ų13582%0.81880%0.797SS**  trans-69.9126.9168.3-178.50000107.6A75 G79A75-V77 PolarHBondContact O-N 3.29Å; V77-G79 PolarHBondContact O-N 3.45Å
78S49.8Very low58.4Low124 Ų124134 Ų13487%0.86780%0.795SS**SBendtrans-69.9112.2170.7116.70000108.4L76L76-S78 PolarHBondContact O-N 3.33Å
79G49.2Very low56.6Low64 Ų64132.8 Ų132.866%0.6681%0.805SS**SBendtrans123106.8165.600000115.8V77V77-G79 PolarHBondContact O-N 3.45Å
80K46.6Very low55.4Low206 Ų206130.5 Ų130.590%0.89680%0.799SS**  trans54.5111.6159.4-142.1170.2-174.2179.60118.2T82K80-T82 PolarHBondContact O-N 3.17Å
81A42.1Very low54.8Low101 Ų101132.1 Ų132.184%0.83581%0.805SS**  trans-60.2111.8171.400000111.1
82T44.1Very low54.8Low138 Ų138138.7 Ų138.785%0.84783%0.825SS**  trans-79.3122.3158.36.10000107.9K80 S84K80-T82 PolarHBondContact O-N 3.17Å; T82-S84 PolarHBondContact O-N 3.43Å
83E41.8Very low55.3Low189 Ų189142.1 Ų142.188%0.88383%0.825SS**  trans-52.2117.4-178.6-64177.2173.800110.7S85E83-S85 PolarHBondContact O-N 2.79Å
84S41.5Very low56Low119 Ų119138.8 Ų138.883%0.83283%0.826SS**  trans-73.190.9175.452.30000109.2T82 A86T82-S84 PolarHBondContact O-N 3.43Å; S84-A86 PolarHBondContact O-N 3.21Å
85S41.5Very low57.7Low93 Ų93135.8 Ų135.865%0.6582%0.824SS**  trans-60.9119.9164.356.20000108.9E83 M87E83-S85 PolarHBondContact O-N 2.79Å; S85-M87 PolarHBondContact O-N 3.46Å
86A46Very low59.2Low108 Ų108135.9 Ų135.989%0.89382%0.815SS**  trans-60.2100.2175.200000110.1S84S84-A86 PolarHBondContact O-N 3.21Å
87M43.1Very low61.1Low172 Ų172135 Ų13585%0.84782%0.819SS**  trans-83.9118.9169.7-78.8-171.5165.800109.1S85S85-M87 PolarHBondContact O-N 3.46Å
88A46.6Very low62.9Low84 Ų84131.5 Ų131.569%0.69480%0.804SS**  trans-49.4141.1171.500000111.1T90A88-T90 VanDerWaalsContact C-N 3.32Å; A88-T90 PolarHBondContact O-N 3.37Å; A88-T90 PolarHBondContact O-OG1 3.18Å
89A51.9Low65.1Low111 Ų111131 Ų13192%0.91780%0.798SS**  trans-62.889.5-179.100000110.9
90T61.7Low67.3Low122 Ų122133.7 Ų133.775%0.74880%0.804SS**PPolyproline II helixtrans-74.5135.6169.1-22.90000108A88 K92A88-T90 VanDerWaalsContact C-N 3.32Å; A88-T90 PolarHBondContact O-N 3.37Å; A88-T90 PolarHBondContact O-OG1 3.18Å; T90-K92 PolarHBondContact O-N 3.18Å; T90-K92 VanDerWaalsContact O-N 3.14Å
91E72.7Confident69.7Low197 Ų197131.4 Ų131.492%0.92180%0.798SS**PPolyproline II helixtrans-54.8118.5177.3-67.2-179.9172.800110.4
92K81.9Confident72.3Confident206 Ų206134.2 Ų134.290%0.89679%0.792SS**PPolyproline II helixtrans-81.4125179-69.8-177.2-179.9177.80109.6T90T90-K92 PolarHBondContact O-N 3.18Å; T90-K92 VanDerWaalsContact O-N 3.14Å
93K90.1Very high74.8Confident191 Ų191138.2 Ų138.283%0.8379%0.791SS**PPolyproline II helixtrans-60.6136173.2-172.4175.4179.8179.20110.3
94A91.4Very high77.4Confident96 Ų96139.7 Ų139.779%0.79379%0.789SS**PPolyproline II helixtrans-62135.2172.200000110.8
95V93.9Very high80.1Confident134 Ų134141 Ų14181%0.81278%0.782SS**  trans-112.1134.6-177.9-179.80000109.4
96T94.8Very high82.7Confident98 Ų98142.3 Ų142.360%0.60178%0.781SS**  trans-98150.8167.454.50000109.9A98T96-A98 WeakPolarHBondContact CB-O 3.27Å; T96-A98 PolarHBondContact O-N 2.98Å; T96-A98 PolarHBondContact OG1-O 3.29Å
97P95.3Very high85.1Confident147 Ų147140.1 Ų140.196%0.95576%0.759SS**SBendtrans-59.9-28.3-178.5-25.334.4000114.4
98A96Very high87.7Confident61 Ų61141 Ų14150%0.50476%0.758SS.*SBendtrans-148166.5175.800000109.5T96T96-A98 WeakPolarHBondContact CB-O 3.27Å; T96-A98 PolarHBondContact O-N 2.98Å; T96-A98 PolarHBondContact OG1-O 3.29Å
99P95.7Very high90Very high113 Ų113144.4 Ų144.473%0.73477%0.765SS**PPolyproline II helixtrans-59.7156.3167.8-21.233.6000111.9M101P99-M101 PolarHBondContact O-N 2.94Å
100P95.4Very high92Very high121 Ų121145.5 Ų145.579%0.78675%0.751SS**PPolyproline II helixtrans-60137.7172.426-33.3000110.3K102P100-K102 PolarHBondContact O-N 3.18Å
101M96.4Very high93.6Very high158 Ų158142.3 Ų142.378%0.77873%0.732SS**PPolyproline II helixtrans-57.9128.5179.9-172.6-179.775.100110.3P99 R103P99-M101 PolarHBondContact O-N 2.94Å; M101-R103 PolarHBondContact O-N 2.78Å
102K97Very high94.5Very high161 Ų161141.5 Ų141.570%0.772%0.722SS**PPolyproline II helixtrans-63.9125.6173.4-172.7178.5176.9-172.90108.8P100 W104 E105P100-K102 PolarHBondContact O-N 3.18Å; K102-W104 PolarHBondContact O-N 3.14Å; K102-E105 IonicContact NZ-OE1 3.07Å
103R96.8Very high94.6Very high221 Ų221142.4 Ų142.483%0.83474%0.735SS**PPolyproline II helixtrans-57.5130.5173.8177.8173.7-76.9137.8-3.8109.2M101M101-R103 PolarHBondContact O-N 2.78Å
104W96.8Very high94.9Very high220 Ų220140 Ų14083%0.83373%0.73SS**PPolyproline II helixtrans-67.3147.9175.4-64.4-5.9000110.9K102K102-W104 PolarHBondContact O-N 3.14Å
105E96.9Very high95.1Very high148 Ų148142.3 Ų142.369%0.69273%0.727SS**PPolyproline II helixtrans-88.6150.3176-65.2174.6-158.600109.9K102K102-E105 IonicContact NZ-OE1 3.07Å
106L96.5Very high95.1Very high119 Ų119142.8 Ų142.862%0.62372%0.722SS**PPolyproline II helixtrans-70.5142.3176.4-169.763.9000110P111L106-P111 HydrophobicContact CD1-CB 4.4Å; L106-P111 HydrophobicContact CD2-CB 3.65Å; L106-P111 HydrophobicContact CG-CB 3.78Å
107S96.5Very high95.1Very high62 Ų62145.4 Ų145.443%0.43473%0.729SS.*PPolyproline II helixtrans-57.8140.3179.3-177.40000111.6D109 P111S107-D109 PolarHBondContact OG-N 3.29Å; S107-P111 WeakPolarHBondContact O-CB 3.43Å
108K96.6Very high95.1Very high191 Ų191145.3 Ų145.383%0.8372%0.715SS**SBendtrans-87.7-17.7174.7-64.4-175.8-178.3178.20113.1
109D96.4Very high95.1Very high156 Ų156150.9 Ų150.983%0.83473%0.73SS**SBendtrans-83.1-52.8-173.5-58.7-25.1000111.3S107S107-D109 PolarHBondContact OG-N 3.29Å
110Q94.1Very high95Very high134 Ų134153.6 Ų153.663%0.62673%0.729SS**  trans-146.484.2175.9-173.5173.1-2.600109.5Y112Q110-Y112 VanDerWaalsContact C-N 3.27Å; Q110-Y112 WeakPolarHBondContact CG-O 3.33Å; Q110-Y112 PolarHBondContact NE2-O 3.06Å; Q110-Y112 PolarHBondContact O-N 3.19Å
111P93.6Very high95Very high54 Ų54156.2 Ų156.235%0.35173%0.725SS.*SBendtrans-70.4-22.2-177.623.3-31.6000114L106 S107L106-P111 HydrophobicContact CD1-CB 4.4Å; L106-P111 HydrophobicContact CD2-CB 3.65Å; L106-P111 HydrophobicContact CG-CB 3.78Å; S107-P111 WeakPolarHBondContact O-CB 3.43Å
112Y91.6Very high94.9Very high181 Ų181156 Ų15671%0.7172%0.72SS**  trans-126135.7-178.5-53.6-69.2000108.9Q110Q110-Y112 VanDerWaalsContact C-N 3.27Å; Q110-Y112 WeakPolarHBondContact CG-O 3.33Å; Q110-Y112 PolarHBondContact NE2-O 3.06Å; Q110-Y112 PolarHBondContact O-N 3.19Å
113L85.9Confident94.7Very high225 Ų225155.5 Ų155.5100%1.17872%0.722SS**  trans-87.50179.8-169.2143.7000111.1

Retrieved 113 of 113 residues in 40.4 ms (Link to these results)