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T cell receptor gamma joining 1

J region of the variable domain of T cell receptor (TR) gamma chain that participates in the antigen recognition1. Gamma-delta TRs recognize a variety of self and foreign non-peptide antigens frequently expressed at the epithelial boundaries between the host and external environment, including endogenous lipids presented by MH-like protein CD1D and phosphoantigens presented by butyrophilin-like molecule BTN3A1. Upon antigen recognition induces rapid, innate-like immune responses involved in pathogen clearance and tissue repair2,3. Binding of gamma-delta TR complex to antigen triggers phosphorylation of immunoreceptor tyrosine-based activation motifs (ITAMs) in the CD3 chains by the LCK and FYN kinases, allowing the recruitment, phosphorylation, and activation of ZAP70 that facilitates phosphorylation of the scaffolding proteins LCP2 and LAT. This lead to the formation of a supramolecular signalosome that recruits the phospholipase PLCG1, resulting in calcium mobilization and ERK activation, ultimately leading to T cell expansion and differentiation into effector cells4. Gamma-delta TRs are produced through somatic rearrangement of a limited repertoire of variable (V), diversity (D), and joining (J) genes. The potential diversity of gamma-delta TRs is conferred by the unique ability to rearrange (D) genes in tandem and to utilize all three reading frames. The combinatorial diversity is considerably increased by the sequence exonuclease trimming and random nucleotide (N) region additions which occur during the V-(D)-J rearrangements5.

AlphaFold DB , UniProt , Accession A0A075B6S0, Species HUMAN (Homo sapiens, Human), Gene TRGJ1, Length 16 aa.

>TRGJ1_HUMAN|A0A075B6S0|TRGJ1
NYYKKLFGSGTTLVVT
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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1N56.9Low72.5Confident224 Ų224162 Ų162100%1.19885%0.853SS**  037.80-106-21.4000113
2Y64.1Low73.5Confident212 Ų212159.3 Ų159.383%0.83185%0.848SS**  trans-106.97.3-161-144.8-96.2000115.1
3Y67Low74.6Confident214 Ų214159 Ų15984%0.83985%0.845SS**  trans-133.781.3-173.9-74.8-80.6000111.5K5Y3-K5 PolarHBondContact O-N 3.45Å
4K69.9Low75.7Confident208 Ų208156.4 Ų156.490%0.90484%0.838SS**  trans-85.398.1155.4-92.8-165.7173.9-172.10107.7L6K4-L6 PolarHBondContact O-N 3.48Å
5K74.3Confident76.4Confident169 Ų169154 Ų15474%0.73583%0.831SS**  trans-79.9112.9169.5-120.7179.4-179-176.60108.2Y3 F7Y3-K5 PolarHBondContact O-N 3.45Å; K5-F7 HydrophobicContact CB-CE2 4.27Å; K5-F7 HydrophobicContact CB-CZ 4.43Å; K5-F7 HydrophobicContact CD-CZ 4.44Å; K5-F7 PolarHBondContact O-N 3.48Å
6L75Confident77.1Confident169 Ų169157.1 Ų157.189%0.88586%0.857SS**  trans-76111.4171.5-68.6157.9000107.7K4K4-L6 PolarHBondContact O-N 3.48Å
7F76Confident77.1Confident181 Ų181157.1 Ų157.179%0.79486%0.857SS**  trans-87.2105.6166.4-63.6-81.4000107K5K5-F7 HydrophobicContact CB-CE2 4.27Å; K5-F7 HydrophobicContact CB-CZ 4.43Å; K5-F7 HydrophobicContact CD-CZ 4.44Å; K5-F7 PolarHBondContact O-N 3.48Å
8G75.1Confident77.1Confident70 Ų70157.1 Ų157.172%0.72286%0.857SS**  trans-62.4150.5170.300000110.4G10G8-G10 PolarHBondContact O-N 3.09Å; G8-G10 VanDerWaalsContact O-N 3.09Å
9S75.5Confident77.1Confident122 Ų122157.1 Ų157.185%0.85386%0.857SS**  trans-51.4112.9-177.949.50000111.8
10G78.6Confident77.1Confident75 Ų75157.1 Ų157.177%0.77386%0.857SS**PPolyproline II helixtrans-69.3134.8174.200000110.9G8G8-G10 PolarHBondContact O-N 3.09Å; G8-G10 VanDerWaalsContact O-N 3.09Å
11T85.3Confident77.1Confident138 Ų138157.1 Ų157.185%0.84786%0.857SS**PPolyproline II helixtrans-77.6138175.250.20000110.7
12T84.8Confident78.5Confident130 Ų130152.7 Ų152.780%0.79883%0.834SS**PPolyproline II helixtrans-75.2123.9175.6-52.90000110.6V14T12-V14 HydrophobicContact CG2-CG2 4.35Å
13L87.6Confident79.5Confident155 Ų155148.4 Ų148.481%0.81284%0.835SS**PPolyproline II helixtrans-81.8118.7169-178.167.8000108.8V15L13-V15 HydrophobicContact CD2-CG2 4.2Å; L13-V15 HydrophobicContact CG-CG2 4.19Å
14V89.3Confident80.5Confident122 Ų122143.4 Ų143.474%0.73983%0.834SS**  trans-104115.1169.9-177.90000107.5T12T12-V14 HydrophobicContact CG2-CG2 4.35Å
15V87.2Confident81.4Confident121 Ų121138 Ų13873%0.73383%0.828SS**  trans-92.7119.3170.5-176.90000106.9L13L13-V15 HydrophobicContact CD2-CG2 4.2Å; L13-V15 HydrophobicContact CG-CG2 4.19Å
16T87.7Confident82Confident204 Ų204135.2 Ų135.2100%1.25284%0.837SS**  trans-770165.228.60000111.5

Retrieved 16 of 16 residues in 11.5 ms (Link to these results)