A0A075B6V8_HUMAN Loading...

T cell receptor alpha joining 5 AlphaSync

AlphaFold DB , UniProt , Accession A0A075B6V8, Species HUMAN (Homo sapiens, Human), Gene TRAJ5, Length 20 aa.

						>A0A075B6V8_HUMAN|A0A075B6V8|TRAJ5
XDTGRRALTFGSGTRLQVQP
					

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(Predicted Aligned Error values between residue pairs)

Download Structure AlphaSync Parameters PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	X	68.1	Low	83.6	Confident	122 Å²	122	132.8 Å²	132.8	100%	1.258	77%	0.767	S	S	*	*				0	130.3	0	0	0	0	0	0	107.5	T3	G1-T3 PolarHBondContact O-N 3.5Å
2	D	72.9	Confident	84.7	Confident	157 Å²	157	132.7 Å²	132.7	84%	0.84	78%	0.779	S	S	*	*			trans	-68.8	98.1	175.6	179.3	25	0	0	0	108.7	G4	D2-G4 PolarHBondContact O-N 3.26Å; D2-G4 WeakPolarHBondContact OD1-CA 3.28Å; D2-G4 PolarHBondContact OD1-N 3.16Å
3	T	73.4	Confident	85.7	Confident	138 Å²	138	129.3 Å²	129.3	85%	0.847	79%	0.79	S	S	*	*			trans	-74	63.3	164.5	44.6	0	0	0	0	108.2	X1 R5	G1-T3 PolarHBondContact O-N 3.5Å; T3-R5 PolarHBondContact O-N 2.98Å
4	G	75.6	Confident	86.5	Confident	39 Å²	39	125.9 Å²	125.9	40%	0.402	77%	0.769	S	S	.	*			trans	-67.4	100.6	179.5	0	0	0	0	0	108.2	D2 R6	D2-G4 PolarHBondContact O-N 3.26Å; D2-G4 WeakPolarHBondContact OD1-CA 3.28Å; D2-G4 PolarHBondContact OD1-N 3.16Å; G4-R6 VanDerWaalsContact C-N 3.31Å; G4-R6 PolarHBondContact O-N 3.22Å
5	R	82.8	Confident	87.2	Confident	246 Å²	246	131.6 Å²	131.6	93%	0.928	77%	0.771	S	S	*	*			trans	-57	101.7	163.4	-75.4	-179.9	167.5	126.8	-4.2	106.6	T3 A7	T3-R5 PolarHBondContact O-N 2.98Å; R5-A7 PolarHBondContact O-N 2.87Å
6	R	83.3	Confident	87.6	Confident	236 Å²	236	130.4 Å²	130.4	89%	0.891	76%	0.759	S	S	*	*			trans	-69.3	117.1	177.2	-67.2	-177	177.8	179.2	-1.2	107.5	G4	G4-R6 VanDerWaalsContact C-N 3.31Å; G4-R6 PolarHBondContact O-N 3.22Å
7	A	88	Confident	88.1	Confident	88 Å²	88	132.2 Å²	132.2	73%	0.727	76%	0.759	S	S	*	*			trans	-66.2	136.3	174.4	0	0	0	0	0	109.5	R5	R5-A7 PolarHBondContact O-N 2.87Å
8	L	91.8	Very high	88.5	Confident	145 Å²	145	131.2 Å²	131.2	76%	0.759	76%	0.756	S	S	*	*			trans	-90.3	110.3	168.8	-60.4	177.5	0	0	0	107.4	F10	L8-F10 HydrophobicContact CB-CE2 4.08Å; L8-F10 HydrophobicContact CB-CZ 4.22Å
9	T	93.9	Very high	88.7	Confident	130 Å²	130	133.8 Å²	133.8	80%	0.798	76%	0.76	S	S	*	*			trans	-98	124.9	176.4	-56.3	0	0	0	0	109.5
10	F	93.7	Very high	88.8	Confident	112 Å²	112	137 Å²	137	49%	0.491	79%	0.786	S	S	.	*			trans	-106.2	131.2	171.8	-58.4	-77.5	0	0	0	109.1	L8 T14 L16	L8-F10 HydrophobicContact CB-CE2 4.08Å; L8-F10 HydrophobicContact CB-CZ 4.22Å; F10-T14 HydrophobicContact CG-CG2 4.32Å; F10-T14 HydrophobicContact CD1-CG2 3.9Å; F10-T14 HydrophobicContact CB-CG2 4.01Å; F10-L16 HydrophobicContact CE1-CD1 4.46Å; F10-L16 HydrophobicContact CZ-CD1 4.21Å
11	G	96.2	Very high	88.8	Confident	48 Å²	48	137 Å²	137	50%	0.495	79%	0.786	S	S	.	*			trans	-75.3	171.9	-179.3	0	0	0	0	0	112.9	G13 T14	G11-G13 PolarHBondContact O-N 2.96Å; G11-T14 VanDerWaalsContact O-CB 3.28Å; G11-T14 WeakPolarHBondContact O-CB 3.47Å; G11-T14 PolarHBondContact O-N 2.88Å; G11-T14 VanDerWaalsContact O-N 3.16Å; G11-T14 PolarHBondContact O-OG1 3Å
12	S	96.9	Very high	89.9	Confident	131 Å²	131	137.7 Å²	137.7	92%	0.916	76%	0.761	S	S	*	*	T	Hydrogen-bonded Turn	trans	-54.8	139.6	176.4	52.4	0	0	0	0	111.7	T14	S12-T14 PolarHBondContact O-N 3.22Å
13	G	97.4	Very high	90.9	Very high	89 Å²	89	136.7 Å²	136.7	92%	0.918	76%	0.757	S	S	*	*	T	Hydrogen-bonded Turn	trans	76.2	-3.1	-178.6	0	0	0	0	0	115.6	G11	G11-G13 PolarHBondContact O-N 2.96Å
14	T	97.1	Very high	91.9	Very high	81 Å²	81	136.6 Å²	136.6	50%	0.497	75%	0.752	S	S	.	*			trans	-75.1	128.3	177.7	-56.2	0	0	0	0	110.9	F10 G11 S12	F10-T14 HydrophobicContact CG-CG2 4.32Å; F10-T14 HydrophobicContact CD1-CG2 3.9Å; F10-T14 HydrophobicContact CB-CG2 4.01Å; G11-T14 VanDerWaalsContact O-CB 3.28Å; G11-T14 WeakPolarHBondContact O-CB 3.47Å; G11-T14 PolarHBondContact O-N 2.88Å; G11-T14 VanDerWaalsContact O-N 3.16Å; G11-T14 PolarHBondContact O-OG1 3Å; S12-T14 PolarHBondContact O-N 3.22Å
15	R	96.3	Very high	92.9	Very high	212 Å²	212	142.7 Å²	142.7	80%	0.8	77%	0.773	S	S	*	*			trans	-108.6	111.6	174.4	-174.1	174.4	-176.5	167	1.5	110.2
16	L	94.6	Very high	93.6	Very high	112 Å²	112	135.8 Å²	135.8	59%	0.586	76%	0.763	S	S	*	*			trans	-76	132.2	171.8	-175.5	64.6	0	0	0	109.8	F10 V18	F10-L16 HydrophobicContact CE1-CD1 4.46Å; F10-L16 HydrophobicContact CZ-CD1 4.21Å; L16-V18 HydrophobicContact CD2-CG2 4.18Å; L16-V18 HydrophobicContact CG-CG2 4.19Å
17	Q	96	Very high	94.3	Very high	161 Å²	161	128.6 Å²	128.6	75%	0.752	75%	0.754	S	S	*	*			trans	-116.8	125.8	169.4	-63.6	-179.1	1.7	0	0	107.6
18	V	94.5	Very high	94.8	Very high	115 Å²	115	131.8 Å²	131.8	70%	0.697	76%	0.756	S	S	*	*			trans	-109.5	122.9	174.4	-179.5	0	0	0	0	107.4	L16	L16-V18 HydrophobicContact CD2-CG2 4.18Å; L16-V18 HydrophobicContact CG-CG2 4.19Å
19	Q	92.7	Very high	95.1	Very high	180 Å²	180	130.7 Å²	130.7	84%	0.841	76%	0.756	S	S	*	*			trans	-87.3	126.8	162.1	-68	179.5	-29.1	0	0	106.8
20	P	91.6	Very high	95.2	Very high	197 Å²	197	130.7 Å²	130.7	100%	1.279	75%	0.752	S	S	*	*			trans	-53.9	0	172.9	-25	34.8	0	0	0	112.9

Retrieved 20 of 20 residues in 5.7 ms (Link to these results)

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