A0A075B6V8_HUMAN Loading...

T cell receptor alpha joining 5 AlphaSync

AlphaFold DB , UniProt , Accession A0A075B6V8, Species HUMAN (Homo sapiens, Human), Gene TRAJ5, Length 20 aa.

						>A0A075B6V8_HUMAN|A0A075B6V8|TRAJ5
MDTGRRALTFGSGTRLQVQP
					

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(Predicted Aligned Error values between residue pairs)

Download Structure AlphaSync Parameters PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	64.3	Low	81.8	Confident	230 Å²	230	140.8 Å²	140.8	100%	1.133	75%	0.745	S	S	*	*				0	117.6	0	-64.5	176.5	-175.5	0	0	105.8	T3	M1-T3 PolarHBondContact O-N 2.98Å
2	D	71.1	Confident	83	Confident	157 Å²	157	139.9 Å²	139.9	84%	0.84	76%	0.759	S	S	*	*			trans	-64.3	104.2	174	-179	12.2	0	0	0	107.4	G4	D2-G4 PolarHBondContact O-N 3.01Å; D2-G4 VanDerWaalsContact OD1-CA 3.26Å; D2-G4 WeakPolarHBondContact OD1-CA 3.26Å; D2-G4 PolarHBondContact OD1-N 3.01Å
3	T	72	Confident	84.1	Confident	131 Å²	131	136.1 Å²	136.1	80%	0.804	77%	0.772	S	S	*	*			trans	-77.2	32.7	173.6	58.3	0	0	0	0	110.2	M1 R5	M1-T3 PolarHBondContact O-N 2.98Å; T3-R5 PolarHBondContact O-N 2.96Å
4	G	71	Confident	85	Confident	35 Å²	35	132.3 Å²	132.3	36%	0.361	75%	0.753	S	S	.	*			trans	-52.8	112.4	-171.5	0	0	0	0	0	108.9	D2 R6	D2-G4 PolarHBondContact O-N 3.01Å; D2-G4 VanDerWaalsContact OD1-CA 3.26Å; D2-G4 WeakPolarHBondContact OD1-CA 3.26Å; D2-G4 PolarHBondContact OD1-N 3.01Å; G4-R6 VanDerWaalsContact C-N 3.32Å; G4-R6 PolarHBondContact O-N 3.04Å
5	R	79.5	Confident	85.8	Confident	243 Å²	243	137.5 Å²	137.5	92%	0.917	76%	0.756	S	S	*	*			trans	-52.4	104.6	167.5	-68.2	171.6	71.1	100	-2.9	105.6	T3 A7	T3-R5 PolarHBondContact O-N 2.96Å; R5-A7 PolarHBondContact O-N 2.82Å
6	R	81.9	Confident	86.3	Confident	236 Å²	236	135.8 Å²	135.8	89%	0.891	75%	0.745	S	S	*	*			trans	-62.1	114.3	179.5	-68.4	-178.3	175.5	-178.1	-2.1	106.7	G4 L8	G4-R6 VanDerWaalsContact C-N 3.32Å; G4-R6 PolarHBondContact O-N 3.04Å; R6-L8 PolarHBondContact O-N 3.47Å
7	A	86.5	Confident	86.9	Confident	88 Å²	88	136.8 Å²	136.8	73%	0.727	74%	0.743	S	S	*	*			trans	-64.5	134.5	177.1	0	0	0	0	0	109	R5	R5-A7 PolarHBondContact O-N 2.82Å
8	L	90.8	Very high	87.3	Confident	143 Å²	143	135.7 Å²	135.7	75%	0.749	74%	0.741	S	S	*	*			trans	-86.7	108.8	170.3	-61.2	177.7	0	0	0	107.4	R6 F10	R6-L8 PolarHBondContact O-N 3.47Å; L8-F10 HydrophobicContact CB-CE2 4.04Å; L8-F10 HydrophobicContact CB-CZ 4.15Å
9	T	93.1	Very high	87.5	Confident	131 Å²	131	138 Å²	138	80%	0.804	75%	0.746	S	S	*	*			trans	-94.6	126.5	176.8	-56.3	0	0	0	0	109.6
10	F	93.6	Very high	87.7	Confident	106 Å²	106	141 Å²	141	47%	0.465	77%	0.773	S	S	.	*			trans	-107.8	133.7	172.6	-58.5	-77.7	0	0	0	109.8	L8 T14 L16	L8-F10 HydrophobicContact CB-CE2 4.04Å; L8-F10 HydrophobicContact CB-CZ 4.15Å; F10-T14 HydrophobicContact CG-CG2 4.33Å; F10-T14 HydrophobicContact CD1-CG2 3.84Å; F10-T14 HydrophobicContact CB-CG2 4.07Å; F10-L16 HydrophobicContact CE1-CD1 4.2Å; F10-L16 HydrophobicContact CE2-CD2 4.14Å; F10-L16 HydrophobicContact CZ-CD1 3.87Å; F10-L16 HydrophobicContact CZ-CD2 4.24Å
11	G	95.8	Very high	87.7	Confident	49 Å²	49	141 Å²	141	51%	0.505	77%	0.773	S	S	.	*			trans	-76	170	179.5	0	0	0	0	0	113	G13 T14	G11-G13 PolarHBondContact O-N 3.18Å; G11-T14 VanDerWaalsContact O-CB 3.29Å; G11-T14 WeakPolarHBondContact O-CB 3.29Å; G11-T14 PolarHBondContact O-N 3.14Å; G11-T14 VanDerWaalsContact O-N 3.14Å; G11-T14 PolarHBondContact O-OG1 3.42Å
12	S	96.7	Very high	89	Confident	130 Å²	130	136.3 Å²	136.3	91%	0.909	75%	0.754	S	S	*	*	T	Hydrogen-bonded Turn	trans	-53	134.8	175	55.3	0	0	0	0	111.8	T14	S12-T14 PolarHBondContact O-N 3.37Å
13	G	97.4	Very high	90	Very high	90 Å²	90	135.2 Å²	135.2	93%	0.928	75%	0.749	S	S	*	*	T	Hydrogen-bonded Turn	trans	78.7	-1.6	179.5	0	0	0	0	0	115.2	G11	G11-G13 PolarHBondContact O-N 3.18Å
14	T	97	Very high	91	Very high	83 Å²	83	135.4 Å²	135.4	51%	0.509	75%	0.746	S	S	.	*			trans	-78.9	129.4	175.9	-59.3	0	0	0	0	110.9	F10 G11 S12	F10-T14 HydrophobicContact CG-CG2 4.33Å; F10-T14 HydrophobicContact CD1-CG2 3.84Å; F10-T14 HydrophobicContact CB-CG2 4.07Å; G11-T14 VanDerWaalsContact O-CB 3.29Å; G11-T14 WeakPolarHBondContact O-CB 3.29Å; G11-T14 PolarHBondContact O-N 3.14Å; G11-T14 VanDerWaalsContact O-N 3.14Å; G11-T14 PolarHBondContact O-OG1 3.42Å; S12-T14 PolarHBondContact O-N 3.37Å
15	R	95.8	Very high	92.3	Very high	211 Å²	211	141.7 Å²	141.7	80%	0.796	77%	0.77	S	S	*	*			trans	-108.1	113.3	175.6	-174.6	175.2	-178.1	173.6	1.7	110.5
16	L	94.4	Very high	93.1	Very high	110 Å²	110	134.9 Å²	134.9	58%	0.576	76%	0.76	S	S	*	*			trans	-76.6	132.8	171.7	-175.9	63.6	0	0	0	109.9	F10 V18	F10-L16 HydrophobicContact CE1-CD1 4.2Å; F10-L16 HydrophobicContact CE2-CD2 4.14Å; F10-L16 HydrophobicContact CZ-CD1 3.87Å; F10-L16 HydrophobicContact CZ-CD2 4.24Å; L16-V18 HydrophobicContact CD2-CG2 4.49Å; L16-V18 HydrophobicContact CG-CG2 4.41Å
17	Q	95.8	Very high	93.9	Very high	152 Å²	152	127.7 Å²	127.7	71%	0.71	75%	0.751	S	S	*	*			trans	-122.9	128.2	171.4	-62.5	-177.5	7.5	0	0	107.9
18	V	94.4	Very high	94.5	Very high	118 Å²	118	130.8 Å²	130.8	72%	0.715	75%	0.753	S	S	*	*			trans	-109.7	123.2	174.8	179.9	0	0	0	0	107.2	L16	L16-V18 HydrophobicContact CD2-CG2 4.49Å; L16-V18 HydrophobicContact CG-CG2 4.41Å
19	Q	92.3	Very high	94.8	Very high	179 Å²	179	129.8 Å²	129.8	84%	0.836	75%	0.753	S	S	*	*			trans	-84.8	126.1	163.5	-68.2	179.2	-35.5	0	0	106.9
20	P	91.6	Very high	95	Very high	198 Å²	198	129.6 Å²	129.6	100%	1.286	75%	0.749	S	S	*	*			trans	-54.5	0	172.6	-24.8	34.9	0	0	0	113

Retrieved 20 of 20 residues in 8 ms (Link to these results)

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