A0A075B6X4_HUMAN Loading...

T cell receptor alpha joining 28 AlphaSync

AlphaFold DB , UniProt , Accession A0A075B6X4, Species HUMAN (Homo sapiens, Human), Gene TRAJ28, Length 22 aa.

						>A0A075B6X4_HUMAN|A0A075B6X4|TRAJ28
XYSGAGSYQLTFGKGTKLSVIP
					

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(Predicted Aligned Error values between residue pairs)

Download Structure AlphaSync Parameters PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	X	59.8	Low	74.7	Confident	124 Å²	124	129.1 Å²	129.1	100%	1.278	80%	0.797	S	S	*	*				0	124.6	0	0	0	0	0	107.6	S3	G1-S3 VanDerWaalsContact O-N 3.09Å; G1-S3 PolarHBondContact O-N 3.38Å
2	Y	62.6	Low	76.2	Confident	237 Å²	237	127.4 Å²	127.4	93%	0.929	77%	0.77	S	S	*	*			trans	-73.9	102.3	174.9	-63.3	-80.3	0	0	107.2	G4	Y2-G4 PolarHBondContact O-N 3.29Å; Y2-G4 VanDerWaalsContact O-N 3.13Å
3	S	70.9	Confident	77.7	Confident	120 Å²	120	121.5 Å²	121.5	84%	0.839	75%	0.751	S	S	*	*			trans	-50	118.1	173.1	13.2	0	0	0	108	X1 A5	G1-S3 VanDerWaalsContact O-N 3.09Å; G1-S3 PolarHBondContact O-N 3.38Å; S3-A5 PolarHBondContact O-N 3.22Å
4	G	64.1	Low	79.1	Confident	68 Å²	68	128.4 Å²	128.4	70%	0.701	77%	0.765	S	S	*	*			trans	-50.5	137.5	-169.2	0	0	0	0	111.8	Y2 G6	Y2-G4 PolarHBondContact O-N 3.29Å; Y2-G4 VanDerWaalsContact O-N 3.13Å; G4-G6 PolarHBondContact O-N 3.49Å
5	A	67.6	Low	80.4	Confident	93 Å²	93	125.7 Å²	125.7	77%	0.769	77%	0.774	S	S	*	*			trans	-43.7	113.4	170.7	0	0	0	0	108.3	S3 S7	S3-A5 PolarHBondContact O-N 3.22Å; A5-S7 PolarHBondContact O-N 3.5Å
6	G	69.9	Low	81.4	Confident	43 Å²	43	122.9 Å²	122.9	44%	0.443	76%	0.757	S	S	.	*			trans	-48.6	135.2	173.4	0	0	0	0	107.8	G4 Y8	G4-G6 PolarHBondContact O-N 3.49Å; G6-Y8 WeakPolarHBondContact O-CD2 3.46Å; G6-Y8 PolarHBondContact O-N 3.47Å
7	S	75.7	Confident	82.3	Confident	126 Å²	126	126.9 Å²	126.9	88%	0.881	76%	0.761	S	S	*	*			trans	-61.7	90.1	175.1	-72.4	0	0	0	108.2	A5 Q9	A5-S7 PolarHBondContact O-N 3.5Å; S7-Q9 VanDerWaalsContact C-N 3.27Å; S7-Q9 PolarHBondContact O-N 3.45Å
8	Y	79.3	Confident	83	Confident	205 Å²	205	126.1 Å²	126.1	80%	0.804	75%	0.751	S	S	*	*			trans	-73.9	89.3	174.6	-65.2	-72.2	0	0	107.2	G6 L10	G6-Y8 WeakPolarHBondContact O-CD2 3.46Å; G6-Y8 PolarHBondContact O-N 3.47Å; Y8-L10 PolarHBondContact O-N 3.33Å
9	Q	87.1	Confident	83.7	Confident	161 Å²	161	124.8 Å²	124.8	75%	0.752	75%	0.749	S	S	*	*			trans	-75.8	116.8	175.3	-173.7	-174.1	-5.4	0	109	S7 T11	S7-Q9 VanDerWaalsContact C-N 3.27Å; S7-Q9 PolarHBondContact O-N 3.45Å; Q9-T11 PolarHBondContact NE2-OG1 2.72Å; Q9-T11 PolarHBondContact O-N 2.93Å
10	L	90.6	Very high	84.2	Confident	139 Å²	139	124.3 Å²	124.3	73%	0.728	75%	0.747	S	S	*	*			trans	-82.6	111.3	166.6	-58.7	178.8	0	0	108	Y8 F12	Y8-L10 PolarHBondContact O-N 3.33Å; L10-F12 HydrophobicContact CB-CZ 4.1Å; L10-F12 HydrophobicContact CB-CE2 3.85Å
11	T	93.7	Very high	84.6	Confident	104 Å²	104	125.6 Å²	125.6	64%	0.638	75%	0.748	S	S	*	*			trans	-102.3	128.8	177	-58.8	0	0	0	109.7	Q9	Q9-T11 PolarHBondContact NE2-OG1 2.72Å; Q9-T11 PolarHBondContact O-N 2.93Å
12	F	92.9	Very high	86.1	Confident	109 Å²	109	128.7 Å²	128.7	48%	0.478	75%	0.746	S	S	.	*			trans	-119	130.8	173.7	-58	-74.3	0	0	109.6	L10 T16 L18	L10-F12 HydrophobicContact CB-CZ 4.1Å; L10-F12 HydrophobicContact CB-CE2 3.85Å; F12-T16 HydrophobicContact CB-CG2 3.96Å; F12-T16 HydrophobicContact CD1-CG2 3.82Å; F12-T16 HydrophobicContact CG-CG2 4.24Å; F12-L18 HydrophobicContact CE1-CD1 4.32Å; F12-L18 HydrophobicContact CE2-CD2 4.1Å; F12-L18 HydrophobicContact CZ-CD1 4.09Å; F12-L18 HydrophobicContact CZ-CD2 4.18Å
13	G	96.4	Very high	87.2	Confident	50 Å²	50	123.3 Å²	123.3	52%	0.515	74%	0.737	S	S	.	*			trans	-79.9	179.2	-175.7	0	0	0	0	113.3	G15 T16	G13-G15 PolarHBondContact O-N 3.49Å; G13-T16 PolarHBondContact N-OG1 3.09Å; G13-T16 WeakPolarHBondContact O-CB 3.08Å; G13-T16 PolarHBondContact O-N 3.28Å; G13-T16 PolarHBondContact O-OG1 2.96Å
14	K	97.1	Very high	88.1	Confident	219 Å²	219	123.5 Å²	123.5	95%	0.952	73%	0.731	S	S	*	*	T	Hydrogen-bonded Turn	trans	-60.6	131.7	176.3	-66.7	-173.6	179.7	-178.4	110.3	T16	K14-T16 VanDerWaalsContact C-N 3.3Å; K14-T16 PolarHBondContact O-N 3.13Å
15	G	97.7	Very high	89.4	Confident	88 Å²	88	126.6 Å²	126.6	91%	0.907	73%	0.733	S	S	*	*	T	Hydrogen-bonded Turn	trans	82.5	-1.9	179.3	0	0	0	0	115.1	G13	G13-G15 PolarHBondContact O-N 3.49Å
16	T	97.5	Very high	90.7	Very high	80 Å²	80	128.5 Å²	128.5	49%	0.491	73%	0.731	S	S	.	*			trans	-73	130.6	175	-58.2	0	0	0	111.1	F12 G13 K14	F12-T16 HydrophobicContact CB-CG2 3.96Å; F12-T16 HydrophobicContact CD1-CG2 3.82Å; F12-T16 HydrophobicContact CG-CG2 4.24Å; G13-T16 PolarHBondContact N-OG1 3.09Å; G13-T16 WeakPolarHBondContact O-CB 3.08Å; G13-T16 PolarHBondContact O-N 3.28Å; G13-T16 PolarHBondContact O-OG1 2.96Å; K14-T16 VanDerWaalsContact C-N 3.3Å; K14-T16 PolarHBondContact O-N 3.13Å
17	K	96.2	Very high	92	Very high	192 Å²	192	133.9 Å²	133.9	84%	0.835	75%	0.749	S	S	*	*			trans	-109.6	114.7	171.3	-173.7	175	-179.1	178.9	109.4
18	L	94.8	Very high	93.1	Very high	111 Å²	111	134.4 Å²	134.4	58%	0.581	74%	0.74	S	S	*	*			trans	-87.3	130.9	172.1	-177.4	65.9	0	0	109.4	F12	F12-L18 HydrophobicContact CE1-CD1 4.32Å; F12-L18 HydrophobicContact CE2-CD2 4.1Å; F12-L18 HydrophobicContact CZ-CD1 4.09Å; F12-L18 HydrophobicContact CZ-CD2 4.18Å
19	S	95.9	Very high	94.1	Very high	102 Å²	102	129.4 Å²	129.4	71%	0.713	74%	0.735	S	S	*	*			trans	-126.1	125.1	169.9	55.8	0	0	0	108.9
20	V	93.6	Very high	94.6	Very high	115 Å²	115	126.9 Å²	126.9	70%	0.697	73%	0.734	S	S	*	*			trans	-102.4	126.4	173.5	-179.8	0	0	0	107.7
21	I	92.4	Very high	95	Very high	152 Å²	152	125.9 Å²	125.9	78%	0.779	74%	0.735	S	S	*	*			trans	-90	126.8	160	-57.8	175.1	0	0	105.3
22	P	91.2	Very high	95.1	Very high	189 Å²	189	127.9 Å²	127.9	100%	1.227	74%	0.743	S	S	*	*			trans	-52.1	0	174.5	-24.9	34	0	0	113.3

Retrieved 22 of 22 residues in 22.5 ms (Link to these results)

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