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T cell receptor alpha joining 3

J region of the variable domain of T cell receptor (TR) alpha chain that participates in the antigen recognition1. Alpha-beta T cell receptors are antigen specific receptors which are essential to the immune response and are present on the cell surface of T lymphocytes. Recognize peptide-major histocompatibility (MH) (pMH) complexes that are displayed by antigen presenting cells (APC), a prerequisite for efficient T cell adaptive immunity against pathogens2. Binding of alpha-beta TR to pMH complex initiates TR-CD3 clustering on the cell surface and intracellular activation of LCK that phosphorylates the ITAM motifs of CD3G, CD3D, CD3E and CD247 enabling the recruitment of ZAP70. In turn ZAP70 phosphorylates LAT, which recruits numerous signaling molecules to form the LAT signalosome. The LAT signalosome propagates signal branching to three major signaling pathways, the calcium, the mitogen-activated protein kinase (MAPK) kinase and the nuclear factor NF-kappa-B (NF-kB) pathways, leading to the mobilization of transcription factors that are critical for gene expression and essential for T cell growth and differentiation3. The T cell repertoire is generated in the thymus, by V-(D)-J rearrangement. This repertoire is then shaped by intrathymic selection events to generate a peripheral T cell pool of self-MH restricted, non-autoaggressive T cells. Post-thymic interaction of alpha-beta TR with the pMH complexes shapes TR structural and functional avidity4.

AlphaFold DB , UniProt , Accession A0A075B6Y3, Species HUMAN (Homo sapiens, Human), Gene TRAJ3, Length 20 aa.

>TJA3_HUMAN|A0A075B6Y3|TRAJ3
GYSSASKIIFGSGTRLSIRP
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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1G58.4Low80.4Confident126 Ų126140.7 Ų140.7100%1.29985%0.846SS**  0119.7000000108.2S3G1-S3 PolarHBondContact O-N 3.36Å
2Y61.9Low81.7Confident244 Ų244140 Ų14096%0.95785%0.852SS**  trans-79.7112175.6-65.3-79.9000108.1
3S73.3Confident82.7Confident117 Ų117133.7 Ų133.782%0.81883%0.833SS**  trans-64.3153.2179.3-170.60000111G1 A5G1-S3 PolarHBondContact O-N 3.36Å; S3-A5 PolarHBondContact O-N 3.32Å
4S76.8Confident83.6Confident113 Ų113133.5 Ų133.579%0.7983%0.831SS**  trans-36.9121.8-176-1760000113.5S6S4-S6 PolarHBondContact O-N 3.4Å
5A80.4Confident84.4Confident91 Ų91139 Ų13975%0.75283%0.83SS**PPolyproline II helixtrans-72.6121.5175.900000110.6S3S3-A5 PolarHBondContact O-N 3.32Å
6S83.8Confident85Confident115 Ų115139.6 Ų139.680%0.80483%0.826SS**PPolyproline II helixtrans-65.7135.1166.7-62.10000109.9S4S4-S6 PolarHBondContact O-N 3.4Å
7K86.7Confident85.6Confident201 Ų201136.4 Ų136.487%0.87481%0.813SS**PPolyproline II helixtrans-75.5136.4175.1-63.6179.1-177.9174.70109.6
8I88.4Confident86.1Confident132 Ų132137.6 Ų137.668%0.67781%0.813SS**PPolyproline II helixtrans-91.2128170.4-59.2171.4000107.8F10I8-F10 HydrophobicContact CB-CZ 4.48Å; I8-F10 HydrophobicContact CG2-CD1 4.41Å; I8-F10 HydrophobicContact CG2-CE1 4.05Å; I8-F10 HydrophobicContact CG2-CE2 4.18Å; I8-F10 HydrophobicContact CG2-CZ 3.93Å
9I89.9Confident86.2Confident160 Ų160141.5 Ų141.582%0.82181%0.812SS**PPolyproline II helixtrans-101.5117.4172.5-57.2174.4000107.5
10F91.8Very high86.4Confident178 Ų178144.7 Ų144.778%0.78184%0.838SS**PPolyproline II helixtrans-83.4137.5177-63.3-81.6000110.7I8I8-F10 HydrophobicContact CB-CZ 4.48Å; I8-F10 HydrophobicContact CG2-CD1 4.41Å; I8-F10 HydrophobicContact CG2-CE1 4.05Å; I8-F10 HydrophobicContact CG2-CE2 4.18Å; I8-F10 HydrophobicContact CG2-CZ 3.93Å
11G92.9Very high86.4Confident71 Ų71144.7 Ų144.773%0.73284%0.838SS**  trans-77.6-173.3169.600000112.2G13G11-G13 PolarHBondContact O-N 3.1Å; G11-G13 VanDerWaalsContact O-N 3.1Å
12S96.5Very high87.9Confident132 Ų132145.7 Ų145.792%0.92381%0.814SS**  trans-66.5-10.1-178.757.20000115.1
13G94.4Very high89.3Confident58 Ų58140.2 Ų140.260%0.59881%0.806SS**  trans64.3-177.2-170.100000112.9G11G11-G13 PolarHBondContact O-N 3.1Å; G11-G13 VanDerWaalsContact O-N 3.1Å
14T95.8Very high90.2Very high131 Ų131141.6 Ų141.680%0.80481%0.805SS**  trans-135.1134.4175.9-57.40000109.2L16T14-L16 PolarHBondContact O-N 3.43Å
15R94.4Very high91.1Very high216 Ų216143.4 Ų143.482%0.81581%0.806SS**  trans-76.3119.6177.6-171.6174.3-170.4-88.7-0.1110.4
16L94.5Very high91.8Very high148 Ų148146.9 Ų146.978%0.77581%0.81SS**  trans-84.1135.9169.3-60.3178000109.6T14T14-L16 PolarHBondContact O-N 3.43Å
17S95.9Very high92.4Very high86 Ų86149.1 Ų149.160%0.60181%0.81SS**  trans-123.7107.9176.3179.80000108.6
18I93.7Very high92.8Very high157 Ų157145.2 Ų145.281%0.80581%0.805SS**  trans-105.5129.7178.2-55.2169.6000107
19R89.2Confident93.2Very high212 Ų212146.3 Ų146.380%0.882%0.816SS**  trans-95.7152.2172.2-66.7175.7-177.8-97.80.7107.8
20P89.2Confident93.5Very high206 Ų206145 Ų145100%1.33882%0.816SS**  trans-47.30-168.9-27.534.5000114.5

Retrieved 20 of 20 residues in 11.1 ms (Link to these results)