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T cell receptor alpha joining 31

J region of the variable domain of T cell receptor (TR) beta chain that participates in the antigen recognition1. Alpha-beta T cell receptors are antigen specific receptors which are essential to the immune response and are present on the cell surface of T lymphocytes. Recognize peptide-major histocompatibility (MH) (pMH) complexes that are displayed by antigen presenting cells (APC), a prerequisite for efficient T cell adaptive immunity against pathogens2. Binding of alpha-beta TR to pMH complex initiates TR-CD3 clustering on the cell surface and intracellular activation of LCK that phosphorylates the ITAM motifs of CD3G, CD3D, CD3E and CD247 enabling the recruitment of ZAP70. In turn ZAP70 phosphorylates LAT, which recruits numerous signaling molecules to form the LAT signalosome. The LAT signalosome propagates signal branching to three major signaling pathways, the calcium, the mitogen-activated protein kinase (MAPK) kinase and the nuclear factor NF-kappa-B (NF-kB) pathways, leading to the mobilization of transcription factors that are critical for gene expression and essential for T cell growth and differentiation3. The T cell repertoire is generated in the thymus, by V-(D)-J rearrangement. This repertoire is then shaped by intrathymic selection events to generate a peripheral T cell pool of self-MH restricted, non-autoaggressive T cells. Post-thymic interaction of alpha-beta TR with the pMH complexes shapes TR structural and functional avidity4.

AlphaFold DB , UniProt , Accession A0A075B700, Species HUMAN (Homo sapiens, Human), Gene TRAJ31, Length 18 aa.

>TJA31_HUMAN|A0A075B700|TRAJ31
NNNARLMFGDGTQLVVKP
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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1N64Low85.3Confident205 Ų205116.3 Ų116.3100%1.09666%0.662SS**  013.40-49.83.3000113.1
2N65.4Low86Confident158 Ų158112.8 Ų112.885%0.84565%0.645SS**  trans-102.291.9175.7-100.1-10.1000109
3N81.9Confident86.7Confident65 Ų65112.8 Ų112.835%0.34864%0.636SS.*  trans-87.4130.3169.8-59.9-11.1000107.7V15 V16N3-V15 HydrophobicContact CB-CG1 4.23Å; N3-V16 WeakPolarHBondContact CA-O 3.35Å
4A88.4Confident87.1Confident67 Ų67111.5 Ų111.555%0.55463%0.626SS**EExtended strand (participates in β ladder)trans-80132.7169.200000108.7V16A4-V16 PolarHBondContact N-O 3.05Å; A4-V16 PolarHBondContact O-N 2.93Å
5R87.5Confident87.4Confident180 Ų180108.2 Ų108.268%0.67961%0.609SS**EExtended strand (participates in β ladder)trans-119.2126.7175.6-62.1-174.3-176-177.21.5108.7L14 V15R5-L14 WeakPolarHBondContact CA-O 3.22Å; R5-V15 HydrophobicContact CG-CG1 4.38Å; R5-V15 HydrophobicContact CG-CG2 4.27Å
6L92.3Very high87.3Confident102 Ų102106.6 Ų106.653%0.53460%0.603SS.*EExtended strand (participates in β ladder)trans-113.9127.2170.2-164.980.1000108.2F8 Q13 L14L6-F8 HydrophobicContact CD2-CE1 3.8Å; L6-F8 HydrophobicContact CD2-CE2 4.36Å; L6-F8 HydrophobicContact CD2-CZ 3.63Å; L6-Q13 WeakPolarHBondContact O-CA 3.31Å; L6-L14 PolarHBondContact N-O 3.2Å; L6-L14 PolarHBondContact O-N 2.91Å
7M91.7Very high87.1Confident139 Ų139108.7 Ų108.769%0.68560%0.604SS**EExtended strand (participates in β ladder)trans-110.3127.4178.3-168.816177.100109.5Q13M7-Q13 HydrophobicContact CB-CG 4.31Å; M7-Q13 HydrophobicContact CG-CG 3.94Å; M7-Q13 HydrophobicContact SD-CG 4.16Å
8F90Very high86.7Confident101 Ų101112.3 Ų112.344%0.44363%0.633SS.*  trans-90.8156.5175-59.4-78.2000110.1L6 D10 G11 T12 L14L6-F8 HydrophobicContact CD2-CE1 3.8Å; L6-F8 HydrophobicContact CD2-CE2 4.36Å; L6-F8 HydrophobicContact CD2-CZ 3.63Å; F8-D10 VanDerWaalsContact O-N 3.07Å; F8-D10 PolarHBondContact O-N 2.89Å; F8-D10 VanDerWaalsContact CB-OD1 3.31Å; F8-D10 WeakPolarHBondContact CB-OD1 3.48Å; F8-G11 PolarHBondContact O-N 2.9Å; F8-T12 HydrophobicContact CD2-CG2 4.42Å; F8-T12 WeakPolarHBondContact CD2-O 3.48Å; F8-T12 PolarHBondContact N-O 3.07Å; F8-L14 HydrophobicContact CE2-CB 4.19Å
9G90.5Very high86.7Confident94 Ų94112.3 Ų112.397%0.96963%0.633SS**THydrogen-bonded Turntrans-65.3-10.5-172.600000115.4G11G9-G11 VanDerWaalsContact C-N 3.33Å
10D94.9Very high86.7Confident121 Ų121112.3 Ų112.365%0.64763%0.633SS**THydrogen-bonded Turntrans-88.20.517267.2-16.9000112.9F8 T12F8-D10 VanDerWaalsContact O-N 3.07Å; F8-D10 PolarHBondContact O-N 2.89Å; F8-D10 VanDerWaalsContact CB-OD1 3.31Å; F8-D10 WeakPolarHBondContact CB-OD1 3.48Å; D10-T12 VanDerWaalsContact CG-OG1 3.25Å; D10-T12 PolarHBondContact OD2-OG1 2.83Å; D10-T12 PolarHBondContact OD1-OG1 2.92Å; D10-T12 PolarHBondContact OD1-N 2.99Å; D10-T12 WeakPolarHBondContact OD1-CB 3.5Å; D10-T12 VanDerWaalsContact OD1-CB 3.22Å; D10-T12 VanDerWaalsContact C-N 3.33Å
11G91.2Very high86.7Confident47 Ų47112.3 Ų112.349%0.48563%0.633SS.*SBendtrans85.8-1.2-176.400000114.4F8 G9F8-G11 PolarHBondContact O-N 2.9Å; G9-G11 VanDerWaalsContact C-N 3.33Å
12T94.5Very high88Confident75 Ų75106.9 Ų106.946%0.4661%0.606SS.*  trans-67.3135.3174.1-59.70000109.9F8 D10F8-T12 HydrophobicContact CD2-CG2 4.42Å; F8-T12 WeakPolarHBondContact CD2-O 3.48Å; F8-T12 PolarHBondContact N-O 3.07Å; D10-T12 VanDerWaalsContact CG-OG1 3.25Å; D10-T12 PolarHBondContact OD2-OG1 2.83Å; D10-T12 PolarHBondContact OD1-OG1 2.92Å; D10-T12 PolarHBondContact OD1-N 2.99Å; D10-T12 WeakPolarHBondContact OD1-CB 3.5Å; D10-T12 VanDerWaalsContact OD1-CB 3.22Å; D10-T12 VanDerWaalsContact C-N 3.33Å
13Q94.8Very high89.4Confident113 Ų113103.7 Ų103.753%0.52859%0.591SS.*EExtended strand (participates in β ladder)trans-119125.6-179-69.8175.772.300111.2L6 M7L6-Q13 WeakPolarHBondContact O-CA 3.31Å; M7-Q13 HydrophobicContact CB-CG 4.31Å; M7-Q13 HydrophobicContact CG-CG 3.94Å; M7-Q13 HydrophobicContact SD-CG 4.16Å
14L93Very high89.9Confident94 Ų94106.3 Ų106.349%0.49261%0.607SS.*EExtended strand (participates in β ladder)trans-96120166.1-177.564.7000109R5 L6 F8 V16R5-L14 WeakPolarHBondContact CA-O 3.22Å; L6-L14 PolarHBondContact N-O 3.2Å; L6-L14 PolarHBondContact O-N 2.91Å; F8-L14 HydrophobicContact CE2-CB 4.19Å; L14-V16 HydrophobicContact CD2-CG2 4.3Å; L14-V16 HydrophobicContact CG-CG2 4.18Å
15V91.7Very high90Very high62 Ų62109.1 Ų109.138%0.37661%0.611SS.*EExtended strand (participates in β ladder)trans-108.3113.1176.2-175.30000108.7N3 R5 K17N3-V15 HydrophobicContact CB-CG1 4.23Å; R5-V15 HydrophobicContact CG-CG1 4.38Å; R5-V15 HydrophobicContact CG-CG2 4.27Å; V15-K17 HydrophobicContact CG1-CG 4.37Å
16V85.3Confident90.2Very high83 Ų83103.6 Ų103.650%0.50361%0.605SS.*EExtended strand (participates in β ladder)trans-99.8119174.3-173.10000108.2N3 A4 L14N3-V16 WeakPolarHBondContact CA-O 3.35Å; A4-V16 PolarHBondContact N-O 3.05Å; A4-V16 PolarHBondContact O-N 2.93Å; L14-V16 HydrophobicContact CD2-CG2 4.3Å; L14-V16 HydrophobicContact CG-CG2 4.18Å
17K84Confident90Very high142 Ų142103.8 Ų103.862%0.61761%0.611SS**  trans-101.1158.9170.7-55.4-173.4-176.4171.30108V15V15-K17 HydrophobicContact CG1-CG 4.37Å
18P78.8Confident89.9Confident174 Ų174100.5 Ų100.5100%1.1361%0.605SS**  trans-51.80156.4-16.129.3000110.7

Retrieved 18 of 18 residues in 7.1 ms (Link to these results)