A0A075B702_HUMAN Loading...

T cell receptor alpha joining 41 AlphaSync

AlphaFold DB , UniProt , Accession A0A075B702, Species HUMAN (Homo sapiens, Human), Gene TRAJ41, Length 21 aa.

						>A0A075B702_HUMAN|A0A075B702|TRAJ41
MNSNSGYALNFGKGTSLLVTP
					

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(Predicted Aligned Error values between residue pairs)

Download Structure AlphaSync Parameters PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	67.5	Low	82.1	Confident	232 Å²	232	133.6 Å²	133.6	100%	1.143	74%	0.742	S	S	*	*				0	116.5	0	-62.2	-172.9	-173.9	0	106.8	S3	M1-S3 PolarHBondContact O-N 3.36Å
2	N	70.5	Confident	83.3	Confident	143 Å²	143	126.7 Å²	126.7	77%	0.765	72%	0.723	S	S	*	*			trans	-80.1	97.4	174.3	-176.4	-39.2	0	0	106.7	N4	N2-N4 PolarHBondContact O-N 3.23Å; N2-N4 PolarHBondContact OD1-N 3.31Å
3	S	76	Confident	84.3	Confident	99 Å²	99	133.9 Å²	133.9	69%	0.692	74%	0.741	S	S	*	*			trans	-74.4	82	170.4	-53.9	0	0	0	107	M1 S5	M1-S3 PolarHBondContact O-N 3.36Å; S3-S5 PolarHBondContact O-N 3.4Å
4	N	74.3	Confident	85.3	Confident	145 Å²	145	130 Å²	130	78%	0.775	75%	0.746	S	S	*	*			trans	-74.5	65	170.2	-153	17.3	0	0	107.4	N2 G6	N2-N4 PolarHBondContact O-N 3.23Å; N2-N4 PolarHBondContact OD1-N 3.31Å; N4-G6 PolarHBondContact O-N 3.19Å
5	S	77.8	Confident	86.1	Confident	98 Å²	98	126.7 Å²	126.7	69%	0.685	73%	0.73	S	S	*	*			trans	-73.1	84.2	171	66	0	0	0	105.9	S3 Y7	S3-S5 PolarHBondContact O-N 3.4Å; S5-Y7 PolarHBondContact O-N 3.4Å
6	G	84.1	Confident	86.7	Confident	60 Å²	60	126.3 Å²	126.3	62%	0.619	74%	0.736	S	S	*	*	P	Polyproline II helix	trans	-50.4	138.8	166.9	0	0	0	0	108.6	N4 A8	N4-G6 PolarHBondContact O-N 3.19Å; G6-A8 PolarHBondContact O-N 2.87Å
7	Y	85.5	Confident	87.2	Confident	226 Å²	226	125.4 Å²	125.4	89%	0.886	73%	0.727	S	S	*	*	P	Polyproline II helix	trans	-62.4	120.7	174.4	-63.7	-76.7	0	0	108.7	S5	S5-Y7 PolarHBondContact O-N 3.4Å
8	A	88.7	Confident	87.7	Confident	73 Å²	73	127.3 Å²	127.3	60%	0.603	73%	0.733	S	S	*	*	P	Polyproline II helix	trans	-80.5	123.9	174.4	0	0	0	0	109.4	G6 N10	G6-A8 PolarHBondContact O-N 2.87Å; A8-N10 PolarHBondContact O-N 2.79Å
9	L	92.2	Very high	88	Confident	142 Å²	142	126.2 Å²	126.2	74%	0.743	73%	0.729	S	S	*	*			trans	-86.6	100.2	168.7	-61.8	178.3	0	0	108.1	F11	L9-F11 HydrophobicContact CB-CE2 3.91Å; L9-F11 HydrophobicContact CB-CZ 4.13Å
10	N	93.7	Very high	88.3	Confident	146 Å²	146	126.2 Å²	126.2	78%	0.781	73%	0.731	S	S	*	*			trans	-94.3	123.9	179.3	-63.6	-48.6	0	0	110.2	A8	A8-N10 PolarHBondContact O-N 2.79Å
11	F	93.5	Very high	88.5	Confident	106 Å²	106	129 Å²	129	47%	0.465	75%	0.753	S	S	.	*			trans	-111	124.5	172.3	-57.8	-73.9	0	0	109	L9 T15 L17	L9-F11 HydrophobicContact CB-CE2 3.91Å; L9-F11 HydrophobicContact CB-CZ 4.13Å; F11-T15 HydrophobicContact CG-CG2 4.29Å; F11-T15 HydrophobicContact CD1-CG2 3.76Å; F11-T15 HydrophobicContact CB-CG2 4.03Å; F11-L17 HydrophobicContact CE1-CD1 4.07Å; F11-L17 HydrophobicContact CE2-CD2 3.82Å; F11-L17 HydrophobicContact CZ-CD1 3.82Å; F11-L17 HydrophobicContact CZ-CD2 3.9Å; F11-L17 HydrophobicContact CZ-CG 4.33Å
12	G	96	Very high	89.5	Confident	50 Å²	50	123.9 Å²	123.9	52%	0.515	73%	0.734	S	S	.	*			trans	-74.8	177.9	-178	0	0	0	0	112.7	G14 T15	G12-G14 PolarHBondContact O-N 3.22Å; G12-T15 WeakPolarHBondContact O-CB 3.5Å; G12-T15 PolarHBondContact O-N 2.94Å; G12-T15 PolarHBondContact O-OG1 3.18Å
13	K	96.7	Very high	90.5	Very high	221 Å²	221	122.8 Å²	122.8	96%	0.961	73%	0.732	S	S	*	*	T	Hydrogen-bonded Turn	trans	-59.3	129.1	175.9	-176.2	-178	-179.7	176.6	110.2	T15	K13-T15 VanDerWaalsContact C-N 3.35Å
14	G	97.5	Very high	91.3	Very high	79 Å²	79	124.2 Å²	124.2	81%	0.814	73%	0.734	S	S	*	*	T	Hydrogen-bonded Turn	trans	84.8	2	177.3	0	0	0	0	114.9	G12	G12-G14 PolarHBondContact O-N 3.22Å
15	T	97.3	Very high	92.3	Very high	81 Å²	81	122.9 Å²	122.9	50%	0.497	73%	0.732	S	S	.	*			trans	-79.9	130.4	174.4	-57.6	0	0	0	111.2	F11 G12 K13	F11-T15 HydrophobicContact CG-CG2 4.29Å; F11-T15 HydrophobicContact CD1-CG2 3.76Å; F11-T15 HydrophobicContact CB-CG2 4.03Å; G12-T15 WeakPolarHBondContact O-CB 3.5Å; G12-T15 PolarHBondContact O-N 2.94Å; G12-T15 PolarHBondContact O-OG1 3.18Å; K13-T15 VanDerWaalsContact C-N 3.35Å
16	S	96	Very high	93.2	Very high	119 Å²	119	124.5 Å²	124.5	83%	0.832	74%	0.735	S	S	*	*			trans	-104.6	123	169.8	-59.8	0	0	0	110
17	L	94.9	Very high	93.9	Very high	112 Å²	112	128.8 Å²	128.8	59%	0.586	74%	0.743	S	S	*	*			trans	-94.6	122.4	173.1	179.8	65	0	0	109.2	F11 V19	F11-L17 HydrophobicContact CE1-CD1 4.07Å; F11-L17 HydrophobicContact CE2-CD2 3.82Å; F11-L17 HydrophobicContact CZ-CD1 3.82Å; F11-L17 HydrophobicContact CZ-CD2 3.9Å; F11-L17 HydrophobicContact CZ-CG 4.33Å; L17-V19 HydrophobicContact CD2-CG2 4.2Å; L17-V19 HydrophobicContact CG-CG2 4.07Å
18	L	96.3	Very high	94.4	Very high	159 Å²	159	121.9 Å²	121.9	83%	0.832	73%	0.732	S	S	*	*			trans	-108.5	124.6	172.1	-178.5	62.2	0	0	108.7
19	V	94.1	Very high	94.9	Very high	107 Å²	107	125.6 Å²	125.6	65%	0.648	74%	0.742	S	S	*	*			trans	-114.3	123.9	177	-178.3	0	0	0	108.2	L17	L17-V19 HydrophobicContact CD2-CG2 4.2Å; L17-V19 HydrophobicContact CG-CG2 4.07Å
20	T	93.4	Very high	95.1	Very high	125 Å²	125	124.3 Å²	124.3	77%	0.767	74%	0.742	S	S	*	*			trans	-83.8	127.4	160.3	-49.4	0	0	0	107.1
21	P	92.1	Very high	95.3	Very high	186 Å²	186	122.3 Å²	122.3	100%	1.208	74%	0.739	S	S	*	*			trans	-52.7	0	173.1	-25.3	34.6	0	0	113.4

Retrieved 21 of 21 residues in 14.2 ms (Link to these results)

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