A0A075B702_HUMAN Loading...

T cell receptor alpha joining 41 AlphaSync

AlphaFold DB , UniProt , Accession A0A075B702, Species HUMAN (Homo sapiens, Human), Gene TRAJ41, Length 21 aa.

						>A0A075B702_HUMAN|A0A075B702|TRAJ41
XNSNSGYALNFGKGTSLLVTP
					

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(Predicted Aligned Error values between residue pairs)

Download Structure AlphaSync Parameters PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	X	65.7	Low	82.5	Confident	129 Å²	129	127.1 Å²	127.1	100%	1.33	77%	0.773	S	S	*	*				0	128.9	0	0	0	0	0	108.1	S3	G1-S3 PolarHBondContact O-N 3.42Å
2	N	73.6	Confident	83.6	Confident	160 Å²	160	120.8 Å²	120.8	86%	0.856	75%	0.753	S	S	*	*			trans	-86.4	89.4	174.3	-164.5	-25.4	0	0	107.4	N4	N2-N4 VanDerWaalsContact C-N 3.25Å; N2-N4 PolarHBondContact O-N 2.82Å
3	S	76.8	Confident	84.6	Confident	101 Å²	101	128.5 Å²	128.5	71%	0.706	77%	0.769	S	S	*	*			trans	-73	88	171.4	43.6	0	0	0	107.7	X1 S5	G1-S3 PolarHBondContact O-N 3.42Å; S3-S5 PolarHBondContact O-N 3.17Å
4	N	76.1	Confident	85.5	Confident	148 Å²	148	125.4 Å²	125.4	79%	0.791	78%	0.777	S	S	*	*			trans	-70.4	71.5	166.5	-163.7	21.6	0	0	107.9	N2 G6	N2-N4 VanDerWaalsContact C-N 3.25Å; N2-N4 PolarHBondContact O-N 2.82Å; N4-G6 PolarHBondContact O-N 3.39Å
5	S	78.7	Confident	86.3	Confident	95 Å²	95	122.2 Å²	122.2	66%	0.664	76%	0.756	S	S	*	*			trans	-73.7	85.5	170.6	60.4	0	0	0	106.5	S3 Y7	S3-S5 PolarHBondContact O-N 3.17Å; S5-Y7 PolarHBondContact O-N 3.36Å
6	G	85	Confident	86.9	Confident	60 Å²	60	121.8 Å²	121.8	62%	0.619	76%	0.759	S	S	*	*	P	Polyproline II helix	trans	-52	137.4	165.5	0	0	0	0	109	N4 A8	N4-G6 PolarHBondContact O-N 3.39Å; G6-A8 PolarHBondContact O-N 3.41Å
7	Y	85.6	Confident	87.3	Confident	227 Å²	227	121.6 Å²	121.6	89%	0.89	75%	0.751	S	S	*	*	P	Polyproline II helix	trans	-65.2	125.6	174.1	-63.9	-77.2	0	0	109	S5	S5-Y7 PolarHBondContact O-N 3.36Å
8	A	88.6	Confident	87.8	Confident	75 Å²	75	123.7 Å²	123.7	62%	0.62	76%	0.756	S	S	*	*	P	Polyproline II helix	trans	-77.4	123.8	174.2	0	0	0	0	109.6	G6 N10	G6-A8 PolarHBondContact O-N 3.41Å; A8-N10 PolarHBondContact O-N 3.33Å
9	L	91.7	Very high	88.1	Confident	142 Å²	142	122.7 Å²	122.7	74%	0.743	75%	0.75	S	S	*	*			trans	-84.7	100.3	169.1	-61.8	178	0	0	108.2	F11	L9-F11 HydrophobicContact CB-CE2 3.89Å; L9-F11 HydrophobicContact CB-CZ 4.18Å
10	N	93.2	Very high	88.4	Confident	142 Å²	142	122.4 Å²	122.4	76%	0.759	75%	0.748	S	S	*	*			trans	-94.7	122.4	179.2	-64.9	-45.7	0	0	110.2	A8	A8-N10 PolarHBondContact O-N 3.33Å
11	F	92.3	Very high	88.5	Confident	119 Å²	119	125.8 Å²	125.8	52%	0.522	77%	0.772	S	S	.	*			trans	-112.6	119.9	172.1	-58.3	-72.2	0	0	109.2	L9 T15 L17	L9-F11 HydrophobicContact CB-CE2 3.89Å; L9-F11 HydrophobicContact CB-CZ 4.18Å; F11-T15 HydrophobicContact CG-CG2 4.28Å; F11-T15 HydrophobicContact CD1-CG2 3.84Å; F11-T15 HydrophobicContact CB-CG2 3.99Å; F11-L17 HydrophobicContact CE2-CD2 4.32Å; F11-L17 HydrophobicContact CZ-CD1 4.49Å; F11-L17 HydrophobicContact CZ-CD2 4.28Å
12	G	95.9	Very high	89.7	Confident	52 Å²	52	125.6 Å²	125.6	54%	0.536	74%	0.744	S	S	.	*			trans	-72.1	173.8	-178.5	0	0	0	0	112.9	G14 T15	G12-G14 PolarHBondContact O-N 2.93Å; G12-T15 PolarHBondContact N-OG1 3.27Å; G12-T15 WeakPolarHBondContact O-CB 3.34Å; G12-T15 PolarHBondContact O-N 2.81Å; G12-T15 VanDerWaalsContact O-N 3.17Å; G12-T15 PolarHBondContact O-OG1 2.98Å
13	K	96.8	Very high	90.5	Very high	221 Å²	221	123.8 Å²	123.8	96%	0.961	74%	0.738	S	S	*	*	T	Hydrogen-bonded Turn	trans	-54.8	134.8	177.3	-72.3	-174.8	178.1	179	111	T15	K13-T15 VanDerWaalsContact C-N 3.32Å
14	G	97.4	Very high	91.3	Very high	85 Å²	85	125.1 Å²	125.1	88%	0.876	74%	0.74	S	S	*	*	T	Hydrogen-bonded Turn	trans	81.7	2.6	179.1	0	0	0	0	115.1	G12	G12-G14 PolarHBondContact O-N 2.93Å
15	T	97.2	Very high	92.2	Very high	77 Å²	77	123.7 Å²	123.7	47%	0.472	74%	0.737	S	S	.	*			trans	-79.1	132.2	176.8	-50	0	0	0	111	F11 G12 K13	F11-T15 HydrophobicContact CG-CG2 4.28Å; F11-T15 HydrophobicContact CD1-CG2 3.84Å; F11-T15 HydrophobicContact CB-CG2 3.99Å; G12-T15 PolarHBondContact N-OG1 3.27Å; G12-T15 WeakPolarHBondContact O-CB 3.34Å; G12-T15 PolarHBondContact O-N 2.81Å; G12-T15 VanDerWaalsContact O-N 3.17Å; G12-T15 PolarHBondContact O-OG1 2.98Å; K13-T15 VanDerWaalsContact C-N 3.32Å
16	S	96	Very high	93	Very high	115 Å²	115	125.5 Å²	125.5	80%	0.804	74%	0.742	S	S	*	*			trans	-113.2	127.9	169.9	-60.1	0	0	0	110
17	L	94.1	Very high	93.6	Very high	119 Å²	119	129.9 Å²	129.9	62%	0.623	75%	0.75	S	S	*	*			trans	-102.6	125.8	174.8	-177.5	65.4	0	0	109.3	F11 V19	F11-L17 HydrophobicContact CE2-CD2 4.32Å; F11-L17 HydrophobicContact CZ-CD1 4.49Å; F11-L17 HydrophobicContact CZ-CD2 4.28Å; L17-V19 HydrophobicContact CD2-CG2 3.97Å; L17-V19 HydrophobicContact CG-CG2 3.96Å
18	L	96.5	Very high	94.1	Very high	160 Å²	160	122.9 Å²	122.9	84%	0.838	74%	0.74	S	S	*	*			trans	-107	121.9	169.2	179.4	63.2	0	0	108.1
19	V	93.7	Very high	94.6	Very high	104 Å²	104	126.6 Å²	126.6	63%	0.63	75%	0.749	S	S	*	*			trans	-110.1	121.6	174.7	-177.4	0	0	0	108.1	L17	L17-V19 HydrophobicContact CD2-CG2 3.97Å; L17-V19 HydrophobicContact CG-CG2 3.96Å
20	T	92.8	Very high	94.8	Very high	116 Å²	116	125.3 Å²	125.3	71%	0.712	75%	0.749	S	S	*	*			trans	-84	129.5	159.4	53	0	0	0	107.7
21	P	91.9	Very high	95	Very high	194 Å²	194	123.8 Å²	123.8	100%	1.26	75%	0.749	S	S	*	*			trans	-51.1	0	171.8	-25.9	34.8	0	0	113.4

Retrieved 21 of 21 residues in 14.4 ms (Link to these results)

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