A0A075B710_HUMAN Loading...

T cell receptor alpha joining 39 AlphaSync

AlphaFold DB , UniProt , Accession A0A075B710, Species HUMAN (Homo sapiens, Human), Gene TRAJ39, Length 21 aa.

						>A0A075B710_HUMAN|A0A075B710|TRAJ39
MNNNAGNMLTFGGGTRLMVKP
					

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(Predicted Aligned Error values between residue pairs)

Download Structure AlphaSync Parameters PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	67.6	Low	79.4	Confident	222 Å²	222	134.7 Å²	134.7	100%	1.094	75%	0.748	S	S	*	*				0	121.6	0	-64.2	177.8	-158.3	0	0	107.3	N3	M1-N3 PolarHBondContact O-N 3.27Å
2	N	75.1	Confident	80.7	Confident	152 Å²	152	127.9 Å²	127.9	81%	0.813	73%	0.731	S	S	*	*			trans	-80.9	98.9	178.2	-167.3	-9.3	0	0	0	107.8	N4	N2-N4 PolarHBondContact O-N 2.8Å
3	N	71.3	Confident	82	Confident	142 Å²	142	124.8 Å²	124.8	76%	0.759	74%	0.744	S	S	*	*			trans	-77	77.1	177.4	-64.5	-54	0	0	0	108.1	M1 A5	M1-N3 PolarHBondContact O-N 3.27Å; N3-A5 PolarHBondContact O-N 2.94Å
4	N	71.1	Confident	83.1	Confident	136 Å²	136	121.6 Å²	121.6	73%	0.727	75%	0.749	S	S	*	*			trans	-76.9	55.8	169.3	-155.8	-41.7	0	0	0	109	N2 G6	N2-N4 PolarHBondContact O-N 2.8Å; N4-G6 PolarHBondContact O-N 2.86Å
5	A	69.3	Low	84	Confident	91 Å²	91	118.7 Å²	118.7	75%	0.752	73%	0.732	S	S	*	*			trans	-74.7	68.1	158.8	0	0	0	0	0	105.7	N3	N3-A5 PolarHBondContact O-N 2.94Å
6	G	78.5	Confident	84.7	Confident	46 Å²	46	126.3 Å²	126.3	47%	0.474	74%	0.742	S	S	.	*			trans	-53.7	157.2	172.9	0	0	0	0	0	109.9	N4 M8	N4-G6 PolarHBondContact O-N 2.86Å; G6-M8 PolarHBondContact O-N 2.92Å
7	N	80.8	Confident	85.3	Confident	160 Å²	160	125.7 Å²	125.7	86%	0.856	74%	0.735	S	S	*	*			trans	-62.3	97	178.5	-69.1	-19.7	0	0	0	109.4	L9	N7-L9 PolarHBondContact O-N 3.22Å
8	M	84.6	Confident	85.9	Confident	168 Å²	168	128.1 Å²	128.1	83%	0.828	74%	0.74	S	S	*	*			trans	-68.7	120.8	179.7	-174.6	161.1	-172.8	0	0	109.1	G6 T10	G6-M8 PolarHBondContact O-N 2.92Å; M8-T10 PolarHBondContact O-N 3.36Å
9	L	88.7	Confident	86.3	Confident	134 Å²	134	128.1 Å²	128.1	70%	0.702	74%	0.742	S	S	*	*			trans	-87	111.5	175.6	-58.1	178.9	0	0	0	108.3	N7 F11	N7-L9 PolarHBondContact O-N 3.22Å; L9-F11 HydrophobicContact CB-CZ 3.88Å; L9-F11 HydrophobicContact CB-CE2 4.07Å
10	T	92.4	Very high	86.7	Confident	118 Å²	118	130.5 Å²	130.5	72%	0.724	74%	0.743	S	S	*	*			trans	-101.5	133.5	177.5	-57.9	0	0	0	0	109.8	M8	M8-T10 PolarHBondContact O-N 3.36Å
11	F	93.9	Very high	87	Confident	113 Å²	113	133.7 Å²	133.7	50%	0.496	77%	0.769	S	S	.	*			trans	-119.5	136.8	177.2	-54.5	-69.6	0	0	0	110.6	L9 T15 L17	L9-F11 HydrophobicContact CB-CZ 3.88Å; L9-F11 HydrophobicContact CB-CE2 4.07Å; F11-T15 HydrophobicContact CB-CG2 4.2Å; F11-T15 HydrophobicContact CD1-CG2 3.86Å; F11-T15 HydrophobicContact CG-CG2 4.33Å; F11-L17 HydrophobicContact CD2-CD1 4.1Å; F11-L17 HydrophobicContact CZ-CG 4.5Å; F11-L17 HydrophobicContact CZ-CD2 3.73Å; F11-L17 HydrophobicContact CZ-CD1 3.99Å; F11-L17 HydrophobicContact CG-CD2 4.46Å; F11-L17 HydrophobicContact CE2-CD2 4.24Å; F11-L17 HydrophobicContact CE2-CD1 3.73Å; F11-L17 HydrophobicContact CE1-CD2 3.61Å; F11-L17 HydrophobicContact CD1-CD2 4Å
12	G	95.2	Very high	87.9	Confident	53 Å²	53	129.3 Å²	129.3	55%	0.546	75%	0.753	S	S	.	*			trans	-88.7	175.2	175.6	0	0	0	0	0	113.2	T15	G12-T15 WeakPolarHBondContact O-CB 3.46Å; G12-T15 PolarHBondContact O-N 3.33Å; G12-T15 PolarHBondContact O-OG1 3.5Å
13	G	97.1	Very high	88.6	Confident	88 Å²	88	128.1 Å²	128.1	91%	0.907	75%	0.75	S	S	*	*	T	Hydrogen-bonded Turn	trans	-59.3	137.8	173.9	0	0	0	0	0	111.9	T15	G13-T15 VanDerWaalsContact C-N 3.31Å; G13-T15 PolarHBondContact O-N 3.48Å
14	G	97.5	Very high	89.6	Confident	79 Å²	79	127.3 Å²	127.3	81%	0.814	75%	0.749	S	S	*	*	T	Hydrogen-bonded Turn	trans	86.9	-11.8	-178.9	0	0	0	0	0	115.2
15	T	97.2	Very high	90.7	Very high	79 Å²	79	126.8 Å²	126.8	49%	0.485	75%	0.75	S	S	.	*			trans	-70	133.1	174.6	-60.6	0	0	0	0	111.1	F11 G12 G13 L17	F11-T15 HydrophobicContact CB-CG2 4.2Å; F11-T15 HydrophobicContact CD1-CG2 3.86Å; F11-T15 HydrophobicContact CG-CG2 4.33Å; G12-T15 WeakPolarHBondContact O-CB 3.46Å; G12-T15 PolarHBondContact O-N 3.33Å; G12-T15 PolarHBondContact O-OG1 3.5Å; G13-T15 VanDerWaalsContact C-N 3.31Å; G13-T15 PolarHBondContact O-N 3.48Å; T15-L17 HydrophobicContact CG2-CD2 4.3Å
16	R	95.8	Very high	92	Very high	239 Å²	239	129.1 Å²	129.1	90%	0.902	75%	0.75	S	S	*	*			trans	-118.6	128.1	176.1	-64	178.1	177.3	173.7	-0.9	109.4
17	L	93.9	Very high	92.9	Very high	117 Å²	117	134.6 Å²	134.6	61%	0.613	77%	0.769	S	S	*	*			trans	-96.6	135.8	177	-58	179.8	0	0	0	109.8	F11 T15	F11-L17 HydrophobicContact CD2-CD1 4.1Å; F11-L17 HydrophobicContact CZ-CG 4.5Å; F11-L17 HydrophobicContact CZ-CD2 3.73Å; F11-L17 HydrophobicContact CZ-CD1 3.99Å; F11-L17 HydrophobicContact CG-CD2 4.46Å; F11-L17 HydrophobicContact CE2-CD2 4.24Å; F11-L17 HydrophobicContact CE2-CD1 3.73Å; F11-L17 HydrophobicContact CE1-CD2 3.61Å; F11-L17 HydrophobicContact CD1-CD2 4Å; T15-L17 HydrophobicContact CG2-CD2 4.3Å
18	M	95.7	Very high	93.8	Very high	168 Å²	168	132.8 Å²	132.8	83%	0.828	76%	0.763	S	S	*	*			trans	-113.8	115.4	171.9	179.1	171.2	-78.5	0	0	108.4
19	V	94.5	Very high	94.5	Very high	129 Å²	129	130.1 Å²	130.1	78%	0.782	76%	0.758	S	S	*	*			trans	-94.1	124.2	172.7	-178.6	0	0	0	0	107.6
20	K	93.6	Very high	95	Very high	176 Å²	176	129.8 Å²	129.8	77%	0.765	76%	0.762	S	S	*	*			trans	-89.4	125.3	164.8	-67.6	177.3	-178.1	172.1	0	106.5
21	P	92.8	Very high	95.2	Very high	198 Å²	198	130.8 Å²	130.8	100%	1.286	77%	0.766	S	S	*	*			trans	-53.1	0	169.2	-24.3	34.7	0	0	0	112.2

Retrieved 21 of 21 residues in 11 ms (Link to these results)

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