A0A076L4M5_HUMAN Loading...

MHC class II antigen

AlphaFold DB , UniProt , Accession A0A076L4M5, Species HUMAN (Homo sapiens, Human), Gene HLA-DQB1, Length 68 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1Q87.8Confident96.8Very high189 Ų18988.6 Ų88.688%0.88342%0.416SS*.  0132.30-176.9175.2-1.200108P53Q1-P53 WeakPolarHBondContact O-CD 3.15Å
2I97.1Very high97Very high57 Ų5789.9 Ų89.929%0.29242%0.422SS..  trans-83.8144176.5-169.7167.4000110.1V4 L22 I32 V50 E51I2-V4 HydrophobicContact CD1-CG2 4.12Å; I2-V4 HydrophobicContact CG1-CG2 4.06Å; I2-L22 HydrophobicContact CG2-CD1 4.18Å; I2-I32 HydrophobicContact CD1-CG2 3.99Å; I2-I32 HydrophobicContact CG2-CG2 4.21Å; I2-V50 HydrophobicContact CD1-CG1 4.18Å; I2-V50 HydrophobicContact CG1-CG1 4.23Å; I2-E51 WeakPolarHBondContact CA-O 3.44Å
3K97.8Very high97Very high117 Ų11786.8 Ų86.851%0.50941%0.407SS..EExtended strand (participates in β ladder)trans-127.8131.8166.8-58.8178.7-169.8164.50108.8V50 E51K3-V50 WeakPolarHBondContact O-CA 3.41Å; K3-E51 HydrophobicContact CB-CB 4.29Å; K3-E51 PolarHBondContact N-O 3.07Å; K3-E51 IonicContact NZ-OE2 2.89Å; K3-E51 PolarHBondContact O-N 3.2Å
4V98.4Very high97.1Very high35 Ų3587.7 Ų87.721%0.21242%0.422CS..EExtended strand (participates in β ladder)trans-126.6125.6177.2-176.60000107.2I2 I32 V34 H49 V50I2-V4 HydrophobicContact CD1-CG2 4.12Å; I2-V4 HydrophobicContact CG1-CG2 4.06Å; V4-I32 HydrophobicContact CG2-CG2 3.95Å; V4-V34 HydrophobicContact CB-CB 4.28Å; V4-V34 HydrophobicContact CB-CG2 3.67Å; V4-V34 HydrophobicContact CG1-CB 3.8Å; V4-V34 HydrophobicContact CG1-CG1 4.41Å; V4-V34 HydrophobicContact CG1-CG2 3.74Å; V4-V34 HydrophobicContact CG2-CG2 4.34Å; V4-H49 WeakPolarHBondContact CA-O 3.41Å; V4-V50 HydrophobicContact CG1-CG2 4.32Å; V4-V50 HydrophobicContact CG2-CG1 4.41Å; V4-V50 HydrophobicContact CG2-CG2 4.27Å
5R98.5Very high97.1Very high64 Ų6488.9 Ų88.924%0.24244%0.437CS..EExtended strand (participates in β ladder)trans-130149.7-177.8-69.6175-68.5-179.7-1.2110.1F7 E12 H49 E51R5-F7 HydrophobicContact CB-CD2 4.39Å; R5-F7 HydrophobicContact CB-CE2 3.76Å; R5-E12 WeakPolarHBondContact CD-OE1 3.15Å; R5-E12 WeakPolarHBondContact CG-OE1 3.34Å; R5-H49 PolarHBondContact N-O 2.79Å; R5-H49 PolarHBondContact NH2-CD2 3.3Å; R5-H49 PolarHBondContact NH2-NE2 2.98Å; R5-H49 PolarHBondContact O-N 3.22Å; R5-E51 IonicContact CZ-OE1 3.65Å; R5-E51 IonicContact NH2-OE1 2.68Å; R5-E51 PolarHBondContact NH2-OE1 2.89Å
6W98.6Very high97Very high38 Ų3885.1 Ų85.114%0.14443%0.428CS..EExtended strand (participates in β ladder)trans-101.1144.1170.5-81.6103.3000110.3E13 V17 V34 L36 C48W6-E13 HydrophobicContact CB-CB 4.43Å; W6-E13 PolarHBondContact O-N 3.32Å; W6-V17 HydrophobicContact CB-CG2 4.29Å; W6-V34 PolarHBondContact NE1-O 2.89Å; W6-L36 HydrophobicContact CB-CD2 4.02Å; W6-L36 HydrophobicContact CD2-CB 3.89Å; W6-L36 HydrophobicContact CD2-CD2 4.05Å; W6-L36 HydrophobicContact CE3-CD2 4.13Å; W6-L36 HydrophobicContact CG-CB 3.82Å; W6-L36 HydrophobicContact CG-CD2 4.02Å; W6-L36 HydrophobicContact CG-CG 4.47Å; W6-C48 HydrophobicContact CE3-CB 4.34Å; W6-C48 HydrophobicContact CH2-CB 3.97Å; W6-C48 HydrophobicContact CZ2-CB 4.23Å; W6-C48 HydrophobicContact CZ3-CB 4.02Å
7F98.4Very high97.1Very high36 Ų3682.9 Ų82.916%0.15842%0.42CS..EExtended strand (participates in β ladder)trans-128.2141.6170.9-68.8-104.5000108.7R5 Q11 E12 Y46 T47 H49R5-F7 HydrophobicContact CB-CD2 4.39Å; R5-F7 HydrophobicContact CB-CE2 3.76Å; F7-Q11 CarbonylContact C-O 3.45Å; F7-Q11 WeakPolarHBondContact CA-O 3.36Å; F7-E12 HydrophobicContact CD1-CB 4.06Å; F7-E12 HydrophobicContact CE1-CB 3.71Å; F7-E12 HydrophobicContact CE1-CG 4.34Å; F7-E12 HydrophobicContact CZ-CB 4.08Å; F7-E12 HydrophobicContact CZ-CG 4.22Å; F7-Y46 CarbonylContact O-C 3.52Å; F7-Y46 VanDerWaalsContact O-CA 3.27Å; F7-Y46 WeakPolarHBondContact O-CA 3.3Å; F7-T47 PolarHBondContact N-O 2.9Å; F7-T47 PolarHBondContact O-N 3.42Å; F7-H49 HydrophobicContact CD2-CB 3.89Å; F7-H49 HydrophobicContact CE2-CB 3.66Å
8R97.6Very high97.2Very high66 Ų6683 Ų8325%0.24943%0.425CS..EExtended strand (participates in β ladder)trans-117.6119.3167.5179.5-176.5179.1-178.93107.7D10 Q11 D44 V45 Y46R8-D10 VanDerWaalsContact C-N 3.3Å; R8-D10 PolarHBondContact O-N 3.03Å; R8-Q11 PolarHBondContact N-O 2.84Å; R8-Q11 PolarHBondContact O-N 3.2Å; R8-D44 IonicContact CZ-OD1 3.46Å; R8-D44 IonicContact CZ-OD2 3.34Å; R8-D44 VanDerWaalsContact NE-CG 3.34Å; R8-D44 IonicContact NE-OD1 2.98Å; R8-D44 PolarHBondContact NE-OD1 3.47Å; R8-D44 IonicContact NE-OD2 3.3Å; R8-D44 PolarHBondContact NE-OD2 2.96Å; R8-D44 VanDerWaalsContact NH2-CG 3.3Å; R8-D44 IonicContact NH2-OD1 3.61Å; R8-D44 PolarHBondContact NH2-OD1 2.89Å; R8-D44 IonicContact NH2-OD2 3.56Å; R8-D44 PolarHBondContact NH2-OD2 2.68Å; R8-V45 WeakPolarHBondContact CA-O 3.41Å; R8-Y46 HydrophobicContact CB-CD1 4.05Å; R8-Y46 HydrophobicContact CB-CE1 3.91Å; R8-Y46 HydrophobicContact CG-CD1 4.15Å; R8-Y46 HydrophobicContact CG-CE1 3.64Å; R8-Y46 PolarHBondContact NE-OH 2.77Å
9N96.6Very high97.2Very high72 Ų7282.5 Ų82.539%0.38543%0.429SS..THydrogen-bonded Turntrans50.450.1-180-53.2-36.8000112.1Q11 D44 V45N9-Q11 PolarHBondContact O-N 3.4Å; N9-Q11 VanDerWaalsContact O-N 3.1Å; N9-D44 PolarHBondContact ND2-OD1 2.88Å; N9-D44 WeakPolarHBondContact OD1-CA 3.28Å; N9-V45 PolarHBondContact N-O 2.89Å; N9-V45 PolarHBondContact OD1-N 3.05Å
10D96.6Very high97.2Very high146 Ų14680.2 Ų80.278%0.78142%0.419SS*.THydrogen-bonded Turntrans64.44.3-178.1-54.9-46.9000116.4R8R8-D10 VanDerWaalsContact C-N 3.3Å; R8-D10 PolarHBondContact O-N 3.03Å
11Q97.8Very high97.2Very high155 Ų15581.6 Ų81.672%0.72443%0.433SS*.EExtended strand (participates in β ladder)trans-100.1132.8172.4-61.6-167.3-19.400110.7F7 R8 N9 E13F7-Q11 CarbonylContact C-O 3.45Å; F7-Q11 WeakPolarHBondContact CA-O 3.36Å; R8-Q11 PolarHBondContact N-O 2.84Å; R8-Q11 PolarHBondContact O-N 3.2Å; N9-Q11 PolarHBondContact O-N 3.4Å; N9-Q11 VanDerWaalsContact O-N 3.1Å; Q11-E13 PolarHBondContact O-N 2.81Å
12E98.1Very high97.6Very high104 Ų10477.2 Ų77.249%0.48642%0.415SS..EExtended strand (participates in β ladder)trans-63.1126.1178.9-172168.117900110.1R5 F7 T14R5-E12 WeakPolarHBondContact CD-OE1 3.15Å; R5-E12 WeakPolarHBondContact CG-OE1 3.34Å; F7-E12 HydrophobicContact CD1-CB 4.06Å; F7-E12 HydrophobicContact CE1-CB 3.71Å; F7-E12 HydrophobicContact CE1-CG 4.34Å; F7-E12 HydrophobicContact CZ-CB 4.08Å; F7-E12 HydrophobicContact CZ-CG 4.22Å; E12-T14 HydrophobicContact CG-CG2 4.49Å
13E97.5Very high97.6Very high49 Ų4977.8 Ų77.823%0.22942%0.418CS..EExtended strand (participates in β ladder)trans-104.8125.9177.9-177.558.9-92.900109.3W6 Q11 T15 V17 L36W6-E13 HydrophobicContact CB-CB 4.43Å; W6-E13 PolarHBondContact O-N 3.32Å; Q11-E13 PolarHBondContact O-N 2.81Å; E13-T15 WeakPolarHBondContact OE1-CA 3.48Å; E13-T15 WeakPolarHBondContact OE1-CB 3.42Å; E13-T15 PolarHBondContact OE1-N 3.1Å; E13-T15 PolarHBondContact OE1-OG1 2.81Å; E13-T15 VanDerWaalsContact OE1-OG1 3.07Å; E13-V17 WeakPolarHBondContact O-CG2 3.31Å; E13-L36 HydrophobicContact CG-CD1 3.64Å; E13-L36 HydrophobicContact CG-CD2 4.2Å
14T97.8Very high97.5Very high100 Ų10079.7 Ų79.761%0.61342%0.422SS*.  trans-118.9-20.2178.158.60000112.1E12 V17E12-T14 HydrophobicContact CG-CG2 4.49Å; T14-V17 PolarHBondContact O-N 3.02Å
15T97.6Very high97.3Very high105 Ų10580.7 Ų80.764%0.64443%0.426SS*.THydrogen-bonded Turntrans-72.5130.8180-45.40000109.2E13 V17 L36E13-T15 WeakPolarHBondContact OE1-CA 3.48Å; E13-T15 WeakPolarHBondContact OE1-CB 3.42Å; E13-T15 PolarHBondContact OE1-N 3.1Å; E13-T15 PolarHBondContact OE1-OG1 2.81Å; E13-T15 VanDerWaalsContact OE1-OG1 3.07Å; T15-V17 PolarHBondContact O-N 2.92Å; T15-L36 VanDerWaalsContact O-CD1 3.3Å; T15-L36 WeakPolarHBondContact O-CD1 3.44Å
16G96.3Very high96.6Very high28 Ų2880.7 Ų80.729%0.28945%0.446SS..THydrogen-bonded Turntrans70.58.9-178.300000114.2E37G16-E37 PolarHBondContact O-N 2.94Å
17V98.2Very high96.4Very high49 Ų4985.2 Ų85.230%0.29747%0.469SS..EExtended strand (participates in β ladder)trans-81124.1173.8177.80000110.1W6 E13 T14 T15 V34 M35 L36W6-V17 HydrophobicContact CB-CG2 4.29Å; E13-V17 WeakPolarHBondContact O-CG2 3.31Å; T14-V17 PolarHBondContact O-N 3.02Å; T15-V17 PolarHBondContact O-N 2.92Å; V17-V34 HydrophobicContact CG1-CG1 3.53Å; V17-M35 VanDerWaalsContact CA-O 3.31Å; V17-M35 WeakPolarHBondContact CA-O 3.38Å; V17-L36 HydrophobicContact CG2-CD1 3.88Å
18V98.1Very high96.1Very high84 Ų8494.3 Ų94.351%0.50950%0.502SS..EExtended strand (participates in β ladder)trans-128.9134.9176.3-175.80000109.1V34 M35V18-V34 CarbonylContact O-C 3.6Å; V18-V34 WeakPolarHBondContact O-CA 3.16Å; V18-M35 PolarHBondContact N-O 2.84Å; V18-M35 PolarHBondContact O-N 2.85Å
19S97.9Very high96Very high73 Ų7394.4 Ų94.451%0.5151%0.51SS..EExtended strand (participates in β ladder)trans-119.6146178.362.30000112.2L33S19-L33 VanDerWaalsContact CA-O 3.3Å; S19-L33 WeakPolarHBondContact CA-O 3.45Å
20T98Very high96Very high37 Ų3795.5 Ų95.523%0.22751%0.512CS..  trans-69.3157.9162.164.40000109.5I23 L33T20-I23 HydrophobicContact CG2-CD1 4.47Å; T20-L33 HydrophobicContact CG2-CB 3.96Å; T20-L33 PolarHBondContact N-O 3.32Å; T20-L33 PolarHBondContact OG1-N 2.87Å
21P96.2Very high96Very high109 Ų10993.5 Ų93.571%0.70850%0.498SS*.  trans-55.1165.2157.1-21.433.5000110.9I23P21-I23 PolarHBondContact O-N 2.95Å
22L95.8Very high96Very high97 Ų9788.6 Ų88.651%0.50848%0.476SS..  trans-68.4115.7171.2-16971.1000109.2I2 F30 I32I2-L22 HydrophobicContact CG2-CD1 4.18Å; L22-F30 HydrophobicContact CD1-CB 3.89Å; L22-F30 HydrophobicContact CD2-CB 4.3Å; L22-F30 HydrophobicContact CD2-CD1 3.71Å; L22-F30 HydrophobicContact CD2-CE1 4.25Å; L22-F30 HydrophobicContact CD2-CG 4.12Å; L22-F30 HydrophobicContact CG-CB 4.04Å; L22-F30 HydrophobicContact CG-CD1 3.86Å; L22-F30 HydrophobicContact CG-CG 4.27Å; L22-I32 HydrophobicContact CD1-CB 4.31Å
23I97.1Very high96Very high70 Ų7088.4 Ų88.436%0.35948%0.478SS..EExtended strand (participates in β ladder)trans-93.9132.8-178.5-61160.3000108.4T20 P21 F30 Q31T20-I23 HydrophobicContact CG2-CD1 4.47Å; P21-I23 PolarHBondContact O-N 2.95Å; I23-F30 CarbonylContact O-C 3.5Å; I23-F30 WeakPolarHBondContact O-CA 3.09Å; I23-Q31 HydrophobicContact CB-CG 3.7Å; I23-Q31 HydrophobicContact CD1-CG 4.31Å; I23-Q31 HydrophobicContact CG2-CG 4.03Å; I23-Q31 PolarHBondContact N-O 3.36Å; I23-Q31 PolarHBondContact O-N 3.31Å
24R95.9Very high96Very high156 Ų15686.8 Ų86.859%0.58947%0.471SS*.EExtended strand (participates in β ladder)trans-93.9126.8173.4-177.3-174.6-67.1-91.52.3109F30R24-F30 HydrophobicContact CB-CD1 4.11Å; R24-F30 HydrophobicContact CB-CE1 4.01Å; R24-F30 HydrophobicContact CG-CD1 4.47Å; R24-F30 HydrophobicContact CG-CE1 4.11Å
25N95Very high96.1Very high57 Ų5786.9 Ų86.931%0.30547%0.466SS..  trans-85.5-24.5-172.3-62.3-26.8000114.1T29 Q31N25-T29 WeakPolarHBondContact CB-OG1 3.5Å; N25-T29 PolarHBondContact N-O 2.94Å; N25-T29 VanDerWaalsContact N-O 3.13Å; N25-T29 PolarHBondContact ND2-OG1 2.91Å; N25-T29 VanDerWaalsContact ND2-OG1 3.09Å; N25-Q31 VanDerWaalsContact OD1-CG 3.28Å; N25-Q31 WeakPolarHBondContact OD1-CG 3.3Å; N25-Q31 PolarHBondContact OD1-NE2 2.88Å; N25-Q31 PolarHBondContact OD1-OE1 3.05Å
26G83.8Confident96.1Very high64 Ų6482.9 Ų82.966%0.6644%0.441SS*.SBendtrans116.7-19.6-179.900000113.9
27E94.3Very high96.1Very high132 Ų13289.3 Ų89.362%0.61746%0.463SS*.SBendtrans-114.548176.842.8-94.9135.400113.6T29E27-T29 PolarHBondContact O-N 2.94Å
28W91.9Very high95.9Very high227 Ų22790 Ų9086%0.8646%0.464SS*.SBendtrans59.43.7-179.6-55.391.9000115.8
29T96.3Very high95.8Very high68 Ų6891.8 Ų91.842%0.41748%0.475SS..  trans-93.1157.1171.964.20000110.5N25 E27N25-T29 WeakPolarHBondContact CB-OG1 3.5Å; N25-T29 PolarHBondContact N-O 2.94Å; N25-T29 VanDerWaalsContact N-O 3.13Å; N25-T29 PolarHBondContact ND2-OG1 2.91Å; N25-T29 VanDerWaalsContact ND2-OG1 3.09Å; E27-T29 PolarHBondContact O-N 2.94Å
30F96.1Very high95.5Very high96 Ų9691.3 Ų91.342%0.42147%0.47SS..EExtended strand (participates in β ladder)trans-129.7155.6176.6-61.8-94.4000109.1L22 I23 R24L22-F30 HydrophobicContact CD1-CB 3.89Å; L22-F30 HydrophobicContact CD2-CB 4.3Å; L22-F30 HydrophobicContact CD2-CD1 3.71Å; L22-F30 HydrophobicContact CD2-CE1 4.25Å; L22-F30 HydrophobicContact CD2-CG 4.12Å; L22-F30 HydrophobicContact CG-CB 4.04Å; L22-F30 HydrophobicContact CG-CD1 3.86Å; L22-F30 HydrophobicContact CG-CG 4.27Å; I23-F30 CarbonylContact O-C 3.5Å; I23-F30 WeakPolarHBondContact O-CA 3.09Å; R24-F30 HydrophobicContact CB-CD1 4.11Å; R24-F30 HydrophobicContact CB-CE1 4.01Å; R24-F30 HydrophobicContact CG-CD1 4.47Å; R24-F30 HydrophobicContact CG-CE1 4.11Å
31Q96.6Very high95.2Very high103 Ų10395 Ų9548%0.48149%0.485SS..EExtended strand (participates in β ladder)trans-135.9151.1172.866.4-1738.900110.5I23 N25I23-Q31 HydrophobicContact CB-CG 3.7Å; I23-Q31 HydrophobicContact CD1-CG 4.31Å; I23-Q31 HydrophobicContact CG2-CG 4.03Å; I23-Q31 PolarHBondContact N-O 3.36Å; I23-Q31 PolarHBondContact O-N 3.31Å; N25-Q31 VanDerWaalsContact OD1-CG 3.28Å; N25-Q31 WeakPolarHBondContact OD1-CG 3.3Å; N25-Q31 PolarHBondContact OD1-NE2 2.88Å; N25-Q31 PolarHBondContact OD1-OE1 3.05Å
32I97.8Very high95Very high53 Ų53101.4 Ų101.427%0.27250%0.495SS..  trans-139.7134.9171.3-174.6171.6000107.1I2 V4 L22 V34I2-I32 HydrophobicContact CD1-CG2 3.99Å; I2-I32 HydrophobicContact CG2-CG2 4.21Å; V4-I32 HydrophobicContact CG2-CG2 3.95Å; L22-I32 HydrophobicContact CD1-CB 4.31Å; I32-V34 HydrophobicContact CD1-CG2 4.19Å; I32-V34 HydrophobicContact CG1-CG2 4.1Å
33L98Very high94.7Very high99 Ų9999.8 Ų99.852%0.51850%0.502SS..  trans-107.5125.5172.1-175.565.9000108.3S19 T20 M35S19-L33 VanDerWaalsContact CA-O 3.3Å; S19-L33 WeakPolarHBondContact CA-O 3.45Å; T20-L33 HydrophobicContact CG2-CB 3.96Å; T20-L33 PolarHBondContact N-O 3.32Å; T20-L33 PolarHBondContact OG1-N 2.87Å; L33-M35 HydrophobicContact CD2-CG 4.1Å; L33-M35 HydrophobicContact CD2-SD 4.09Å; L33-M35 HydrophobicContact CG-CG 4.01Å
34V98.3Very high94.7Very high16 Ų1697.1 Ų97.110%0.09749%0.488CS..EExtended strand (participates in β ladder)trans-118.7108.1176.3-175.50000108.2V4 W6 V17 V18 I32V4-V34 HydrophobicContact CB-CB 4.28Å; V4-V34 HydrophobicContact CB-CG2 3.67Å; V4-V34 HydrophobicContact CG1-CB 3.8Å; V4-V34 HydrophobicContact CG1-CG1 4.41Å; V4-V34 HydrophobicContact CG1-CG2 3.74Å; V4-V34 HydrophobicContact CG2-CG2 4.34Å; W6-V34 PolarHBondContact NE1-O 2.89Å; V17-V34 HydrophobicContact CG1-CG1 3.53Å; V18-V34 CarbonylContact O-C 3.6Å; V18-V34 WeakPolarHBondContact O-CA 3.16Å; I32-V34 HydrophobicContact CD1-CG2 4.19Å; I32-V34 HydrophobicContact CG1-CG2 4.1Å
35M98.1Very high94.7Very high101 Ų10190.7 Ų90.750%0.49847%0.466SS..EExtended strand (participates in β ladder)trans-96.3145.7-178.1-60.7-176.7-66.300109.8V17 V18 L33V17-M35 VanDerWaalsContact CA-O 3.31Å; V17-M35 WeakPolarHBondContact CA-O 3.38Å; V18-M35 PolarHBondContact N-O 2.84Å; V18-M35 PolarHBondContact O-N 2.85Å; L33-M35 HydrophobicContact CD2-CG 4.1Å; L33-M35 HydrophobicContact CD2-SD 4.09Å; L33-M35 HydrophobicContact CG-CG 4.01Å
36L98Very high94.8Very high22 Ų2288.1 Ų88.112%0.11545%0.453CS..EExtended strand (participates in β ladder)trans-118.4114.9171.6171.159.8000108.6W6 E13 T15 V17 M38 Y46W6-L36 HydrophobicContact CB-CD2 4.02Å; W6-L36 HydrophobicContact CD2-CB 3.89Å; W6-L36 HydrophobicContact CD2-CD2 4.05Å; W6-L36 HydrophobicContact CE3-CD2 4.13Å; W6-L36 HydrophobicContact CG-CB 3.82Å; W6-L36 HydrophobicContact CG-CD2 4.02Å; W6-L36 HydrophobicContact CG-CG 4.47Å; E13-L36 HydrophobicContact CG-CD1 3.64Å; E13-L36 HydrophobicContact CG-CD2 4.2Å; T15-L36 VanDerWaalsContact O-CD1 3.3Å; T15-L36 WeakPolarHBondContact O-CD1 3.44Å; V17-L36 HydrophobicContact CG2-CD1 3.88Å; L36-M38 HydrophobicContact CB-CE 4.07Å; L36-M38 HydrophobicContact CD2-CE 3.52Å; L36-M38 HydrophobicContact CD2-SD 4.28Å; L36-M38 HydrophobicContact CG-CB 4.26Å; L36-M38 HydrophobicContact CG-CE 3.77Å; L36-M38 HydrophobicContact CG-CG 4.41Å; L36-Y46 HydrophobicContact CD2-CD1 3.79Å; L36-Y46 HydrophobicContact CD2-CE1 4.15Å
37E97.7Very high95.5Very high163 Ų16385.7 Ų85.776%0.76243%0.425SS*.  trans-77.9120.1169.2-173.6174.5-167.800109.6G16G16-E37 PolarHBondContact O-N 2.94Å
38M93.6Very high95.7Very high63 Ų6380.6 Ų80.631%0.3140%0.404SS..  trans-152.3159.7-173.860.3169.3115.600112.1L36 Y46 W63L36-M38 HydrophobicContact CB-CE 4.07Å; L36-M38 HydrophobicContact CD2-CE 3.52Å; L36-M38 HydrophobicContact CD2-SD 4.28Å; L36-M38 HydrophobicContact CG-CB 4.26Å; L36-M38 HydrophobicContact CG-CE 3.77Å; L36-M38 HydrophobicContact CG-CG 4.41Å; M38-Y46 HydrophobicContact CB-CE1 4.41Å; M38-Y46 HydrophobicContact CE-CD1 3.63Å; M38-Y46 HydrophobicContact CE-CD2 4.34Å; M38-Y46 HydrophobicContact CE-CE1 3.97Å; M38-Y46 HydrophobicContact CE-CG 3.83Å; M38-Y46 HydrophobicContact CG-CE1 4.45Å; M38-Y46 HydrophobicContact SD-CD1 3.45Å; M38-Y46 WeakPolarHBondContact SD-CD1 3.13Å; M38-Y46 HydrophobicContact SD-CD2 3.81Å; M38-Y46 HydrophobicContact SD-CE1 3.16Å; M38-Y46 WeakPolarHBondContact SD-CE1 3.46Å; M38-Y46 HydrophobicContact SD-CE2 3.53Å; M38-Y46 VanDerWaalsContact SD-CE2 3.53Å; M38-Y46 HydrophobicContact SD-CG 3.75Å; M38-W63 HydrophobicContact SD-CZ3 4.43Å
39T94.6Very high96Very high121 Ų12171.3 Ų71.374%0.74237%0.37SS*.  trans-108.4104.2163.2-56.20000108.3Q41T39-Q41 PolarHBondContact O-N 2.84Å
40P92.3Very high96.2Very high63 Ų6369.5 Ų69.541%0.40936%0.358SS..  trans-66.7133.7-174.524.9-32.2000111.4Y46 W63 A65P40-Y46 HydrophobicContact CB-CE2 4.4Å; P40-W63 HydrophobicContact CB-CH2 3.93Å; P40-W63 HydrophobicContact CB-CZ3 3.99Å; P40-W63 HydrophobicContact CG-CH2 4.22Å; P40-A65 HydrophobicContact CB-CB 3.83Å; P40-A65 HydrophobicContact CG-CB 4.43Å
41Q91.8Very high96.3Very high116 Ų11667.8 Ų67.854%0.54235%0.352SS..  trans-107.5152.8173.8-54.2-179.232.600110.5T39 G43 D44T39-Q41 PolarHBondContact O-N 2.84Å; Q41-G43 PolarHBondContact O-N 2.89Å; Q41-D44 VanDerWaalsContact CB-OD2 3.28Å; Q41-D44 WeakPolarHBondContact CB-OD2 3.39Å; Q41-D44 PolarHBondContact N-OD2 3.07Å; Q41-D44 WeakPolarHBondContact O-CB 3.27Å; Q41-D44 PolarHBondContact O-N 2.74Å
42R91.5Very high96.3Very high242 Ų24266.7 Ų66.791%0.91335%0.347SS*.THydrogen-bonded Turntrans-58.8125.9176.5-174.3-179.5-177.6-177.93109.6
43G91.3Very high96.3Very high64 Ų6469 Ų6966%0.6637%0.365SS*.THydrogen-bonded Turntrans92.4-10.1-18000000114.3Q41Q41-G43 PolarHBondContact O-N 2.89Å
44D95.3Very high96.3Very high13 Ų1368.7 Ų68.77%0.0737%0.371CS..  trans-64.4142.5170.4-76.2-35.8000111.3R8 N9 Q41 Y46R8-D44 IonicContact CZ-OD1 3.46Å; R8-D44 IonicContact CZ-OD2 3.34Å; R8-D44 VanDerWaalsContact NE-CG 3.34Å; R8-D44 IonicContact NE-OD1 2.98Å; R8-D44 PolarHBondContact NE-OD1 3.47Å; R8-D44 IonicContact NE-OD2 3.3Å; R8-D44 PolarHBondContact NE-OD2 2.96Å; R8-D44 VanDerWaalsContact NH2-CG 3.3Å; R8-D44 IonicContact NH2-OD1 3.61Å; R8-D44 PolarHBondContact NH2-OD1 2.89Å; R8-D44 IonicContact NH2-OD2 3.56Å; R8-D44 PolarHBondContact NH2-OD2 2.68Å; N9-D44 PolarHBondContact ND2-OD1 2.88Å; N9-D44 WeakPolarHBondContact OD1-CA 3.28Å; Q41-D44 VanDerWaalsContact CB-OD2 3.28Å; Q41-D44 WeakPolarHBondContact CB-OD2 3.39Å; Q41-D44 PolarHBondContact N-OD2 3.07Å; Q41-D44 WeakPolarHBondContact O-CB 3.27Å; Q41-D44 PolarHBondContact O-N 2.74Å; D44-Y46 HydrophobicContact CB-CD2 4.13Å; D44-Y46 HydrophobicContact CB-CE2 3.36Å; D44-Y46 PolarHBondContact OD2-OH 3.37Å
45V96.6Very high96.3Very high21 Ų2170.7 Ų70.713%0.12738%0.381CS..  trans-121.4124.3171.2-167.10000107.9R8 N9 E62 R64R8-V45 WeakPolarHBondContact CA-O 3.41Å; N9-V45 PolarHBondContact N-O 2.89Å; N9-V45 PolarHBondContact OD1-N 3.05Å; V45-E62 HydrophobicContact CG1-CG 4.29Å; V45-R64 HydrophobicContact CG1-CG 4.25Å; V45-R64 HydrophobicContact CG2-CG 4.46Å
46Y97.7Very high96.3Very high3 Ų375.9 Ų75.91%0.01240%0.404CS..EExtended strand (participates in β ladder)trans-109130.9176.8-62.6-90000109.1F7 R8 L36 M38 P40 D44 E62 W63F7-Y46 CarbonylContact O-C 3.52Å; F7-Y46 VanDerWaalsContact O-CA 3.27Å; F7-Y46 WeakPolarHBondContact O-CA 3.3Å; R8-Y46 HydrophobicContact CB-CD1 4.05Å; R8-Y46 HydrophobicContact CB-CE1 3.91Å; R8-Y46 HydrophobicContact CG-CD1 4.15Å; R8-Y46 HydrophobicContact CG-CE1 3.64Å; R8-Y46 PolarHBondContact NE-OH 2.77Å; L36-Y46 HydrophobicContact CD2-CD1 3.79Å; L36-Y46 HydrophobicContact CD2-CE1 4.15Å; M38-Y46 HydrophobicContact CB-CE1 4.41Å; M38-Y46 HydrophobicContact CE-CD1 3.63Å; M38-Y46 HydrophobicContact CE-CD2 4.34Å; M38-Y46 HydrophobicContact CE-CE1 3.97Å; M38-Y46 HydrophobicContact CE-CG 3.83Å; M38-Y46 HydrophobicContact CG-CE1 4.45Å; M38-Y46 HydrophobicContact SD-CD1 3.45Å; M38-Y46 WeakPolarHBondContact SD-CD1 3.13Å; M38-Y46 HydrophobicContact SD-CD2 3.81Å; M38-Y46 HydrophobicContact SD-CE1 3.16Å; M38-Y46 WeakPolarHBondContact SD-CE1 3.46Å; M38-Y46 HydrophobicContact SD-CE2 3.53Å; M38-Y46 VanDerWaalsContact SD-CE2 3.53Å; M38-Y46 HydrophobicContact SD-CG 3.75Å; P40-Y46 HydrophobicContact CB-CE2 4.4Å; D44-Y46 HydrophobicContact CB-CD2 4.13Å; D44-Y46 HydrophobicContact CB-CE2 3.36Å; D44-Y46 PolarHBondContact OD2-OH 3.37Å; Y46-E62 CarbonylContact O-C 3.6Å; Y46-E62 WeakPolarHBondContact O-CA 3.37Å; Y46-W63 AromaticContact CD2-CE3 3.58Å; Y46-W63 HydrophobicContact CD2-CE3 3.58Å; Y46-W63 AromaticContact CD2-CZ3 3.69Å; Y46-W63 HydrophobicContact CD2-CZ3 3.69Å; Y46-W63 HydrophobicContact CE2-CE3 4.35Å; Y46-W63 AromaticContact CE2-CZ3 3.99Å; Y46-W63 HydrophobicContact CE2-CZ3 3.99Å; Y46-W63 HydrophobicContact CG-CE3 4.22Å; Y46-W63 PolarHBondContact N-O 3.42Å; Y46-W63 PolarHBondContact O-N 3.09Å
47T98.5Very high96.3Very high14 Ų1478.7 Ų78.79%0.08643%0.426CS..EExtended strand (participates in β ladder)trans-123120.9-178.3-55.20000109.8F7 T60 V61F7-T47 PolarHBondContact N-O 2.9Å; F7-T47 PolarHBondContact O-N 3.42Å; T47-T60 HydrophobicContact CG2-CG2 4.05Å; T47-V61 WeakPolarHBondContact CA-O 3.28Å
48C98.4Very high96.3Very high24 Ų2473.9 Ų73.916%0.16241%0.409CS..EExtended strand (participates in β ladder)trans-83.9120.1165.8178.70000108.4W6 T60 V61W6-C48 HydrophobicContact CE3-CB 4.34Å; W6-C48 HydrophobicContact CH2-CB 3.97Å; W6-C48 HydrophobicContact CZ2-CB 4.23Å; W6-C48 HydrophobicContact CZ3-CB 4.02Å; C48-T60 CarbonylContact O-C 3.53Å; C48-T60 VanDerWaalsContact O-CA 3.31Å; C48-T60 WeakPolarHBondContact O-CA 3.43Å; C48-V61 HydrophobicContact CB-CB 4.45Å; C48-V61 PolarHBondContact N-O 2.81Å; C48-V61 PolarHBondContact O-N 2.9Å
49H98.6Very high96.5Very high32 Ų3274.9 Ų74.915%0.14841%0.414CS..EExtended strand (participates in β ladder)trans-112.8122.6-177.5-174.7128.4000109.8V4 R5 F7 E51 P58 I59V4-H49 WeakPolarHBondContact CA-O 3.41Å; R5-H49 PolarHBondContact N-O 2.79Å; R5-H49 PolarHBondContact NH2-CD2 3.3Å; R5-H49 PolarHBondContact NH2-NE2 2.98Å; R5-H49 PolarHBondContact O-N 3.22Å; F7-H49 HydrophobicContact CD2-CB 3.89Å; F7-H49 HydrophobicContact CE2-CB 3.66Å; H49-E51 IonicContact NE2-OE1 3.76Å; H49-P58 WeakPolarHBondContact NE2-CB 3.47Å; H49-I59 CarbonylContact C-O 3.57Å; H49-I59 WeakPolarHBondContact CA-O 3.31Å
50V98.6Very high96.7Very high30 Ų3073.1 Ų73.118%0.18240%0.404CS..EExtended strand (participates in β ladder)trans-118.8120.8-176.4-175.70000111.2I2 K3 V4 P58 I59I2-V50 HydrophobicContact CD1-CG1 4.18Å; I2-V50 HydrophobicContact CG1-CG1 4.23Å; K3-V50 WeakPolarHBondContact O-CA 3.41Å; V4-V50 HydrophobicContact CG1-CG2 4.32Å; V4-V50 HydrophobicContact CG2-CG1 4.41Å; V4-V50 HydrophobicContact CG2-CG2 4.27Å; V50-P58 WeakPolarHBondContact O-CA 3.46Å; V50-I59 HydrophobicContact CB-CB 4.39Å; V50-I59 PolarHBondContact N-O 2.86Å; V50-I59 PolarHBondContact O-N 3.13Å
51E98.6Very high97Very high61 Ų6174.3 Ų74.329%0.28541%0.409SS..EExtended strand (participates in β ladder)trans-107133.3168-61.4179-179.100109.9I2 K3 R5 H49 P58I2-E51 WeakPolarHBondContact CA-O 3.44Å; K3-E51 HydrophobicContact CB-CB 4.29Å; K3-E51 PolarHBondContact N-O 3.07Å; K3-E51 IonicContact NZ-OE2 2.89Å; K3-E51 PolarHBondContact O-N 3.2Å; R5-E51 IonicContact CZ-OE1 3.65Å; R5-E51 IonicContact NH2-OE1 2.68Å; R5-E51 PolarHBondContact NH2-OE1 2.89Å; H49-E51 IonicContact NE2-OE1 3.76Å; E51-P58 HydrophobicContact CG-CB 4.32Å; E51-P58 HydrophobicContact CG-CG 4.28Å
52H98.2Very high97.3Very high80 Ų8074.3 Ų74.337%0.3741%0.409SS..  trans-152143.1174.7-174.1-106.1000110.2S54 L55H52-S54 WeakPolarHBondContact ND1-CB 3.39Å; H52-S54 PolarHBondContact ND1-N 3.02Å; H52-S54 PolarHBondContact ND1-OG 2.97Å; H52-S54 PolarHBondContact O-N 3.4Å; H52-L55 HydrophobicContact CB-CD1 3.95Å; H52-L55 HydrophobicContact CB-CG 4.17Å; H52-L55 WeakPolarHBondContact O-CB 3.34Å; H52-L55 PolarHBondContact O-N 2.89Å
53P97.8Very high97.5Very high101 Ų10168.4 Ų68.466%0.65639%0.387SS*.THydrogen-bonded Turntrans-58.7-19.4-177.3-28.936.6000116Q1 L55Q1-P53 WeakPolarHBondContact O-CD 3.15Å; P53-L55 VanDerWaalsContact C-N 3.27Å
54S97.3Very high97.7Very high93 Ų9372 Ų7265%0.6538%0.381SS*.THydrogen-bonded Turntrans-79.4-9.9175.371.10000113.4H52H52-S54 WeakPolarHBondContact ND1-CB 3.39Å; H52-S54 PolarHBondContact ND1-N 3.02Å; H52-S54 PolarHBondContact ND1-OG 2.97Å; H52-S54 PolarHBondContact O-N 3.4Å
55L97.8Very high97.3Very high57 Ų5773.2 Ų73.230%0.29839%0.392SS..  trans-101.3133.1-176.6-57.9173.5000109.5H52 P53 S57 I59H52-L55 HydrophobicContact CB-CD1 3.95Å; H52-L55 HydrophobicContact CB-CG 4.17Å; H52-L55 WeakPolarHBondContact O-CB 3.34Å; H52-L55 PolarHBondContact O-N 2.89Å; P53-L55 VanDerWaalsContact C-N 3.27Å; L55-S57 VanDerWaalsContact C-N 3.35Å; L55-S57 WeakPolarHBondContact CB-O 3.2Å; L55-I59 HydrophobicContact CD1-CD1 3.7Å; L55-I59 HydrophobicContact CD1-CG1 3.92Å; L55-I59 HydrophobicContact CD2-CD1 3.67Å; L55-I59 HydrophobicContact CD2-CG1 4.3Å; L55-I59 HydrophobicContact CG-CD1 4.35Å
56Q98Very high96.4Very high210 Ų21081.3 Ų81.398%0.98143%0.429SS*.SBendtrans-73-30.7175.6-66-178.35.500112.2
57S97.9Very high94.8Very high82 Ų8285.6 Ų85.657%0.57346%0.459SS*.SBendtrans-137.9157.4174.760.40000109.5L55L55-S57 VanDerWaalsContact C-N 3.35Å; L55-S57 WeakPolarHBondContact CB-O 3.2Å
58P98.1Very high92.9Very high62 Ų6297.7 Ų97.740%0.40352%0.515SS..  trans-61.2148.3176.8-18.730.9000111.9H49 V50 E51H49-P58 WeakPolarHBondContact NE2-CB 3.47Å; V50-P58 WeakPolarHBondContact O-CA 3.46Å; E51-P58 HydrophobicContact CG-CB 4.32Å; E51-P58 HydrophobicContact CG-CG 4.28Å
59I98.3Very high92.6Very high83 Ų83101.4 Ų101.443%0.42653%0.533SS..EExtended strand (participates in β ladder)trans-92132.3169.6-70.6170.4000108.1H49 V50 L55 V61H49-I59 CarbonylContact C-O 3.57Å; H49-I59 WeakPolarHBondContact CA-O 3.31Å; V50-I59 HydrophobicContact CB-CB 4.39Å; V50-I59 PolarHBondContact N-O 2.86Å; V50-I59 PolarHBondContact O-N 3.13Å; L55-I59 HydrophobicContact CD1-CD1 3.7Å; L55-I59 HydrophobicContact CD1-CG1 3.92Å; L55-I59 HydrophobicContact CD2-CD1 3.67Å; L55-I59 HydrophobicContact CD2-CG1 4.3Å; L55-I59 HydrophobicContact CG-CD1 4.35Å; I59-V61 HydrophobicContact CG2-CG2 4.23Å
60T98.3Very high92.3Very high85 Ų85105 Ų10552%0.52155%0.553SS.*EExtended strand (participates in β ladder)trans-119.6130.9173.753.20000109.9T47 C48T47-T60 HydrophobicContact CG2-CG2 4.05Å; C48-T60 CarbonylContact O-C 3.53Å; C48-T60 VanDerWaalsContact O-CA 3.31Å; C48-T60 WeakPolarHBondContact O-CA 3.43Å
61V98.2Very high91.9Very high88 Ų88109.2 Ų109.253%0.53357%0.573SS.*EExtended strand (participates in β ladder)trans-120.3116.8174-178.70000107.9T47 C48 I59T47-V61 WeakPolarHBondContact CA-O 3.28Å; C48-V61 HydrophobicContact CB-CB 4.45Å; C48-V61 PolarHBondContact N-O 2.81Å; C48-V61 PolarHBondContact O-N 2.9Å; I59-V61 HydrophobicContact CG2-CG2 4.23Å
62E97.7Very high91.5Very high116 Ų116112 Ų11254%0.54259%0.59SS.*EExtended strand (participates in β ladder)trans-86.2143.7176.8-70.7-170.6-161.500111.6V45 Y46 R64V45-E62 HydrophobicContact CG1-CG 4.29Å; Y46-E62 CarbonylContact O-C 3.6Å; Y46-E62 WeakPolarHBondContact O-CA 3.37Å; E62-R64 IonicContact OE2-CZ 2.77Å; E62-R64 IonicContact OE2-NE 3.67Å; E62-R64 IonicContact OE2-NH2 3.05Å; E62-R64 PolarHBondContact OE2-NH2 2.79Å
63W96.5Very high91.1Very high118 Ų118114 Ų11445%0.44760%0.604SS.*EExtended strand (participates in β ladder)trans-132.5138.1169.3-177.790.6000109.7M38 P40 Y46 A65M38-W63 HydrophobicContact SD-CZ3 4.43Å; P40-W63 HydrophobicContact CB-CH2 3.93Å; P40-W63 HydrophobicContact CB-CZ3 3.99Å; P40-W63 HydrophobicContact CG-CH2 4.22Å; Y46-W63 AromaticContact CD2-CE3 3.58Å; Y46-W63 HydrophobicContact CD2-CE3 3.58Å; Y46-W63 AromaticContact CD2-CZ3 3.69Å; Y46-W63 HydrophobicContact CD2-CZ3 3.69Å; Y46-W63 HydrophobicContact CE2-CE3 4.35Å; Y46-W63 AromaticContact CE2-CZ3 3.99Å; Y46-W63 HydrophobicContact CE2-CZ3 3.99Å; Y46-W63 HydrophobicContact CG-CE3 4.22Å; Y46-W63 PolarHBondContact N-O 3.42Å; Y46-W63 PolarHBondContact O-N 3.09Å; W63-A65 HydrophobicContact CH2-CB 3.67Å; W63-A65 HydrophobicContact CZ2-CB 4.41Å; W63-A65 HydrophobicContact CZ3-CB 4.07Å
64R94.9Very high90.7Very high139 Ų139114.9 Ų114.953%0.52560%0.601SS.*  trans-131.2138175.9-64.1172.5-171-100.5-6.9107.6V45 E62 Q66V45-R64 HydrophobicContact CG1-CG 4.25Å; V45-R64 HydrophobicContact CG2-CG 4.46Å; E62-R64 IonicContact OE2-CZ 2.77Å; E62-R64 IonicContact OE2-NE 3.67Å; E62-R64 IonicContact OE2-NH2 3.05Å; E62-R64 PolarHBondContact OE2-NH2 2.79Å; R64-Q66 PolarHBondContact O-N 2.87Å
65A87.9Confident90.2Very high38 Ų38116.4 Ų116.431%0.31460%0.597SS.*PPolyproline II helixtrans-61.6132.4171.900000109.3P40 W63 S67P40-A65 HydrophobicContact CB-CB 3.83Å; P40-A65 HydrophobicContact CG-CB 4.43Å; W63-A65 HydrophobicContact CH2-CB 3.67Å; W63-A65 HydrophobicContact CZ2-CB 4.41Å; W63-A65 HydrophobicContact CZ3-CB 4.07Å; A65-S67 PolarHBondContact O-N 3.36Å
66Q77.2Confident89.6Confident191 Ų191121 Ų12189%0.89362%0.62SS**PPolyproline II helixtrans-63.4127.8171.8-71.6-178.5-6.100108.1R64R64-Q66 PolarHBondContact O-N 2.87Å
67S64.3Low88.9Confident93 Ų93113.6 Ų113.665%0.6559%0.59SS**PPolyproline II helixtrans-67.8130.5163.343.40000108.1A65A65-S67 PolarHBondContact O-N 3.36Å
68E57.9Low88.1Confident268 Ų268116.5 Ų116.5100%1.25259%0.591SS**  trans-55.50160.5-67-172.816500111.2

Retrieved 68 of 68 residues in 108 ms (Link to these results)