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DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non-coding RNAs, and a small RNAs, such as 5S rRNA and tRNAs, respectively. Pol II is the central component of the basal RNA polymerase II transcription machinery. Pols are composed of mobile elements that move relative to each other. In Pol II, RBP10 is part of the core element with the central large cleft.

AlphaFold DB , UniProt , Accession A0A077ZKT1, Species TRITR (Trichuris trichiura, Whipworm), Gene n/a, Length 67 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M87.1Confident95.6Very high139 Ų13983.7 Ų83.769%0.68543%0.432SS*.  0163.80-65.9-172.281.600106.8H52 V53 L55M1-H52 PolarHBondContact O-CE1 3.49Å; M1-H52 PolarHBondContact O-NE2 3.14Å; M1-V53 PolarHBondContact N-O 2.98Å; M1-L55 VanDerWaalsContact N-N 3.11Å
2I92.9Very high95.7Very high122 Ų12283.1 Ų83.163%0.62642%0.423SS*.PPolyproline II helixtrans-53148.8-176.2-56.1171.5000111.5I56I2-I56 HydrophobicContact CG1-CB 4.18Å; I2-I56 HydrophobicContact CG1-CG1 4.1Å; I2-I56 HydrophobicContact CG1-CG2 4.35Å
3I95.1Very high95.8Very high13 Ų1381.9 Ų81.97%0.06742%0.423CS..PPolyproline II helixtrans-56.9141.1178.2-171.5167.6000112.3I5 I14 W18 L49 H52I3-I5 PolarHBondContact O-N 3.01Å; I3-I14 HydrophobicContact CD1-CG2 3.79Å; I3-I14 HydrophobicContact CG1-CG2 4.39Å; I3-W18 HydrophobicContact CB-CB 4.28Å; I3-W18 HydrophobicContact CB-CG 4.34Å; I3-W18 HydrophobicContact CD1-CB 3.81Å; I3-W18 HydrophobicContact CD1-CD2 4.26Å; I3-W18 HydrophobicContact CD1-CE3 3.95Å; I3-W18 HydrophobicContact CD1-CG 4.25Å; I3-W18 HydrophobicContact CG2-CB 3.75Å; I3-W18 HydrophobicContact CG2-CG 4.15Å; I3-L49 HydrophobicContact CD1-CD2 3.31Å; I3-L49 HydrophobicContact CD1-CG 4.37Å; I3-H52 VanDerWaalsContact CA-NE2 3.29Å; I3-H52 WeakPolarHBondContact CA-NE2 3.38Å; I3-H52 PolarHBondContact N-NE2 3.48Å; I3-H52 VanDerWaalsContact N-NE2 3.18Å
4P96.3Very high95.8Very high35 Ų3576.1 Ų76.123%0.22739%0.393CS..PPolyproline II helixtrans-59.5135.8175.1-24.635.1000112.6R6 F8 G15P4-R6 VanDerWaalsContact C-N 3.26Å; P4-R6 PolarHBondContact O-N 3.33Å; P4-F8 HydrophobicContact CB-CE1 3.78Å; P4-F8 HydrophobicContact CB-CZ 3.73Å; P4-F8 HydrophobicContact CG-CE1 3.96Å; P4-F8 HydrophobicContact CG-CE2 4Å; P4-F8 HydrophobicContact CG-CZ 3.36Å; P4-G15 PolarHBondContact O-N 2.66Å
5I96.6Very high95.8Very high130 Ų13072.9 Ų72.967%0.66739%0.386SS*.SBendtrans-59-40.5179.3-59.5170.5000110.9I3 I14 G15I3-I5 PolarHBondContact O-N 3.01Å; I5-I14 PolarHBondContact O-N 2.64Å; I5-G15 PolarHBondContact O-N 2.1Å; I5-G15 VanDerWaalsContact O-N 3.1Å
6R97.4Very high95.8Very high161 Ų16175.3 Ų75.361%0.60840%0.399SS*.BIsolated β-bridgetrans-126.8151.7-179.7-64.3-173.9177.1-161.92.9111.2P4 F8 G11 K12P4-R6 VanDerWaalsContact C-N 3.26Å; P4-R6 PolarHBondContact O-N 3.33Å; R6-F8 PolarHBondContact O-N 3.07Å; R6-G11 WeakPolarHBondContact CD-O 3.39Å; R6-K12 CarbonylContact C-O 3.49Å; R6-K12 WeakPolarHBondContact CA-O 3.45Å
7C97.6Very high95.9Very high4 Ų472.5 Ų72.53%0.02738%0.382CS..  trans-65.2130.9170.9171.60000111T9 C10 G11 K12 I14 C44 C45 M48C7-T9 PolarHBondContact O-N 3.44Å; C7-T9 PolarHBondContact SG-N 2.89Å; C7-T9 VanDerWaalsContact SG-N 3.45Å; C7-C10 WeakPolarHBondContact CB-SG 3.44Å; C7-C10 PolarHBondContact SG-N 2.75Å; C7-C10 PolarHBondContact SG-SG 3.11Å; C7-G11 WeakPolarHBondContact O-CA 3.33Å; C7-G11 PolarHBondContact O-N 3.48Å; C7-K12 PolarHBondContact N-O 3.19Å; C7-I14 HydrophobicContact CB-CG1 3.95Å; C7-C44 VanDerWaalsContact SG-C 3.59Å; C7-C44 PolarHBondContact SG-O 3.08Å; C7-C45 HydrophobicContact CB-CB 4.2Å; C7-M48 HydrophobicContact CB-CG 3.93Å; C7-M48 HydrophobicContact CB-SD 4.4Å
8F97.2Very high95.9Very high156 Ų15670.4 Ų70.468%0.68437%0.368SS*.THydrogen-bonded Turntrans-61.2-16.6-178.3-57.8-41.1000115.3P4 R6 M48P4-F8 HydrophobicContact CB-CE1 3.78Å; P4-F8 HydrophobicContact CB-CZ 3.73Å; P4-F8 HydrophobicContact CG-CE1 3.96Å; P4-F8 HydrophobicContact CG-CE2 4Å; P4-F8 HydrophobicContact CG-CZ 3.36Å; R6-F8 PolarHBondContact O-N 3.07Å; F8-M48 HydrophobicContact CB-SD 4.3Å; F8-M48 HydrophobicContact CD2-CE 3.75Å; F8-M48 HydrophobicContact CD2-SD 3.57Å; F8-M48 VanDerWaalsContact CD2-SD 3.57Å; F8-M48 HydrophobicContact CE2-CE 4.32Å; F8-M48 HydrophobicContact CE2-SD 4.06Å; F8-M48 HydrophobicContact CG-SD 3.96Å
9T97.7Very high95.9Very high88 Ų8875.5 Ų75.554%0.5439%0.39SS..THydrogen-bonded Turntrans-109.3-51.4179.7-550000112.3C7 C44 R47C7-T9 PolarHBondContact O-N 3.44Å; C7-T9 PolarHBondContact SG-N 2.89Å; C7-T9 VanDerWaalsContact SG-N 3.45Å; T9-C44 HydrophobicContact CG2-CB 4.12Å; T9-R47 PolarHBondContact OG1-NH2 3.48Å
10C97.6Very high95.9Very high37 Ų3774.9 Ų74.925%0.2539%0.393CS..THydrogen-bonded Turntrans-92.1-10.5-169.971.90000113.1C7 K12 C45C7-C10 WeakPolarHBondContact CB-SG 3.44Å; C7-C10 PolarHBondContact SG-N 2.75Å; C7-C10 PolarHBondContact SG-SG 3.11Å; C10-K12 PolarHBondContact O-N 3Å; C10-K12 WeakPolarHBondContact SG-CB 3.29Å; C10-C45 WeakPolarHBondContact CB-SG 3.39Å; C10-C45 WeakPolarHBondContact SG-CB 3.29Å; C10-C45 CovalentContact SG-SG 2.1Å; C10-C45 PolarHBondContact SG-SG 3.42Å
11G96.5Very high96Very high36 Ų3672 Ų7237%0.37138%0.377SS..  trans66.5-3.1-175.900000115.5R6 C7R6-G11 WeakPolarHBondContact CD-O 3.39Å; C7-G11 WeakPolarHBondContact O-CA 3.33Å; C7-G11 PolarHBondContact O-N 3.48Å
12K96.2Very high96.4Very high76 Ų7668.3 Ų68.333%0.3336%0.36SS..  trans-59.5141.1176.9-170.2176.3-179.2174.50109.7R6 C7 C10 I14 G39 L40R6-K12 CarbonylContact C-O 3.49Å; R6-K12 WeakPolarHBondContact CA-O 3.45Å; C7-K12 PolarHBondContact N-O 3.19Å; C10-K12 PolarHBondContact O-N 3Å; C10-K12 WeakPolarHBondContact SG-CB 3.29Å; K12-I14 PolarHBondContact O-N 2.83Å; K12-G39 PolarHBondContact NZ-O 2.99Å; K12-G39 VanDerWaalsContact NZ-O 3.14Å; K12-L40 HydrophobicContact CD-CD2 4.48Å
13V96.9Very high96.6Very high68 Ų6864.1 Ų64.141%0.41235%0.347SS..BIsolated β-bridgetrans-64.9127.9173.4-173.50000109.5N16V13-N16 WeakPolarHBondContact CG1-OD1 3.32Å
14I96.8Very high96.7Very high1 Ų165.2 Ų65.21%0.00535%0.353CS..  trans-125.9-29.6-178.2-64.1-62.8000112I3 I5 C7 K12 N16 K17 L40 C45 M48 L49I3-I14 HydrophobicContact CD1-CG2 3.79Å; I3-I14 HydrophobicContact CG1-CG2 4.39Å; I5-I14 PolarHBondContact O-N 2.64Å; C7-I14 HydrophobicContact CB-CG1 3.95Å; K12-I14 PolarHBondContact O-N 2.83Å; I14-N16 PolarHBondContact O-N 2.89Å; I14-K17 WeakPolarHBondContact O-CB 3.48Å; I14-K17 PolarHBondContact O-N 3.44Å; I14-L40 HydrophobicContact CD1-CD1 4.49Å; I14-L40 HydrophobicContact CD1-CD2 3.64Å; I14-C45 HydrophobicContact CD1-CB 3.93Å; I14-M48 HydrophobicContact CG2-CB 4.04Å; I14-L49 HydrophobicContact CG2-CD2 4.24Å; I14-L49 HydrophobicContact CG2-CG 4.23Å
15G95.7Very high96.7Very high28 Ų2866.4 Ų66.429%0.28936%0.357SS..G310 helixtrans-56.5-27.4-175.800000114.4P4 I5 K17P4-G15 PolarHBondContact O-N 2.66Å; I5-G15 PolarHBondContact O-N 2.1Å; I5-G15 VanDerWaalsContact O-N 3.1Å; G15-K17 VanDerWaalsContact C-N 3.25Å; G15-K17 PolarHBondContact O-N 3.29Å
16N96.1Very high96.7Very high111 Ų11168 Ų6859%0.59436%0.361SS*.G310 helixtrans-79.53.4178.274.5-56.3000114.9V13 I14V13-N16 WeakPolarHBondContact CG1-OD1 3.32Å; I14-N16 PolarHBondContact O-N 2.89Å
17K96.1Very high96.7Very high28 Ų2863.1 Ų63.112%0.12236%0.356CS..G310 helixtrans-113.2-7.5-174.2-60.7-170.4174.6-155.40114.2I14 G15 Y21 L38 L40 L49I14-K17 WeakPolarHBondContact O-CB 3.48Å; I14-K17 PolarHBondContact O-N 3.44Å; G15-K17 VanDerWaalsContact C-N 3.25Å; G15-K17 PolarHBondContact O-N 3.29Å; K17-Y21 WeakPolarHBondContact O-CB 3.49Å; K17-Y21 PolarHBondContact O-N 3.29Å; K17-L38 HydrophobicContact CB-CD1 4.48Å; K17-L38 HydrophobicContact CD-CB 4.47Å; K17-L38 PolarHBondContact NZ-O 2.92Å; K17-L40 HydrophobicContact CD-CD1 4.38Å; K17-L40 HydrophobicContact CD-CD2 4.03Å; K17-L40 HydrophobicContact CD-CG 4.32Å; K17-L49 HydrophobicContact CB-CD1 4.44Å
18W96.3Very high96.6Very high34 Ų3471.9 Ų71.913%0.12940%0.396CS..Hα-helixtrans-64.4-50.6-174.7-179.4-120.6000112.5I3 S20 Y21 L22 L49 H52 D54I3-W18 HydrophobicContact CB-CB 4.28Å; I3-W18 HydrophobicContact CB-CG 4.34Å; I3-W18 HydrophobicContact CD1-CB 3.81Å; I3-W18 HydrophobicContact CD1-CD2 4.26Å; I3-W18 HydrophobicContact CD1-CE3 3.95Å; I3-W18 HydrophobicContact CD1-CG 4.25Å; I3-W18 HydrophobicContact CG2-CB 3.75Å; I3-W18 HydrophobicContact CG2-CG 4.15Å; W18-S20 VanDerWaalsContact C-N 3.34Å; W18-S20 PolarHBondContact O-N 3.47Å; W18-Y21 HydrophobicContact CE3-CD1 4.01Å; W18-Y21 AromaticContact CZ3-CD1 3.75Å; W18-Y21 HydrophobicContact CZ3-CD1 3.75Å; W18-Y21 HydrophobicContact CZ3-CE1 4.08Å; W18-Y21 WeakPolarHBondContact O-CB 3.45Å; W18-Y21 PolarHBondContact O-N 3.47Å; W18-Y21 VanDerWaalsContact O-N 3.13Å; W18-L22 HydrophobicContact CD2-CD1 4.4Å; W18-L22 HydrophobicContact CD2-CG 4.4Å; W18-L22 HydrophobicContact CH2-CD2 4.17Å; W18-L22 HydrophobicContact CZ2-CD1 4.05Å; W18-L22 HydrophobicContact CZ2-CD2 3.99Å; W18-L22 HydrophobicContact CZ2-CG 4.2Å; W18-L22 PolarHBondContact O-N 3.45Å; W18-L49 HydrophobicContact CE3-CD2 3.68Å; W18-L49 HydrophobicContact CZ3-CD2 4.35Å; W18-H52 AromaticContact CD2-ND1 3.84Å; W18-H52 AromaticContact CE2-CE1 3.98Å; W18-H52 AromaticContact CE2-ND1 3.56Å; W18-H52 AromaticContact CE3-ND1 3.87Å; W18-H52 HydrophobicContact CH2-CB 4.2Å; W18-H52 AromaticContact CH2-ND1 3.38Å; W18-H52 WeakPolarHBondContact CH2-ND1 3.34Å; W18-H52 AromaticContact CZ2-ND1 3.34Å; W18-H52 VanDerWaalsContact CZ2-ND1 3.34Å; W18-H52 WeakPolarHBondContact CZ2-ND1 3.38Å; W18-H52 HydrophobicContact CZ3-CB 3.99Å; W18-H52 AromaticContact CZ3-ND1 3.65Å; W18-D54 HydrophobicContact CZ2-CB 4.19Å
19E95.5Very high96.5Very high167 Ų16770.2 Ų70.278%0.7839%0.386SS*.Hα-helixtrans-61.5-42.8179.1-65.4175.5-178.500111.8Y21 L22 G23E19-Y21 VanDerWaalsContact C-N 3.32Å; E19-Y21 PolarHBondContact O-N 2.71Å; E19-L22 PolarHBondContact O-N 3.05Å; E19-G23 PolarHBondContact O-N 3.47Å
20S96.7Very high96.4Very high64 Ų6469.5 Ų69.545%0.44838%0.382SS..Hα-helixtrans-64.4-36.2175.7-52.50000112.6W18 G23 L24W18-S20 VanDerWaalsContact C-N 3.34Å; W18-S20 PolarHBondContact O-N 3.47Å; S20-G23 PolarHBondContact O-N 3.07Å; S20-L24 VanDerWaalsContact O-CG 3.28Å; S20-L24 WeakPolarHBondContact O-CG 3.43Å; S20-L24 PolarHBondContact O-N 2.84Å
21Y97.3Very high96.3Very high13 Ų1373.1 Ų73.15%0.05140%0.395CS..Hα-helixtrans-63.6-48.3174.3177.4-113.5000111.2K17 W18 E19 G23 L24 L25 A34 L35 L38 L49K17-Y21 WeakPolarHBondContact O-CB 3.49Å; K17-Y21 PolarHBondContact O-N 3.29Å; W18-Y21 HydrophobicContact CE3-CD1 4.01Å; W18-Y21 AromaticContact CZ3-CD1 3.75Å; W18-Y21 HydrophobicContact CZ3-CD1 3.75Å; W18-Y21 HydrophobicContact CZ3-CE1 4.08Å; W18-Y21 WeakPolarHBondContact O-CB 3.45Å; W18-Y21 PolarHBondContact O-N 3.47Å; W18-Y21 VanDerWaalsContact O-N 3.13Å; E19-Y21 VanDerWaalsContact C-N 3.32Å; E19-Y21 PolarHBondContact O-N 2.71Å; Y21-G23 VanDerWaalsContact C-N 3.34Å; Y21-G23 PolarHBondContact O-N 3.11Å; Y21-L24 PolarHBondContact O-N 3.09Å; Y21-L25 HydrophobicContact CD1-CD1 4.17Å; Y21-L25 HydrophobicContact CE1-CD1 3.58Å; Y21-L25 HydrophobicContact CE1-CG 4.36Å; Y21-L25 HydrophobicContact CE2-CD1 4.29Å; Y21-L25 HydrophobicContact CE2-CD2 4.24Å; Y21-L25 HydrophobicContact CE2-CG 4.27Å; Y21-L25 WeakPolarHBondContact O-CG 3.27Å; Y21-L25 PolarHBondContact O-N 3.3Å; Y21-A34 HydrophobicContact CD2-CB 3.91Å; Y21-A34 HydrophobicContact CE2-CB 3.93Å; Y21-L35 HydrophobicContact CD2-CD2 4.27Å; Y21-L35 HydrophobicContact CE2-CD2 4.08Å; Y21-L35 HydrophobicContact CE2-CG 4.15Å; Y21-L38 HydrophobicContact CD2-CD1 4.04Å; Y21-L38 HydrophobicContact CG-CD1 4.33Å; Y21-L49 HydrophobicContact CD1-CB 4.41Å; Y21-L49 HydrophobicContact CD2-CD1 4.45Å; Y21-L49 HydrophobicContact CE1-CB 4.5Å; Y21-L49 HydrophobicContact CG-CD1 4.33Å; Y21-L49 HydrophobicContact CG-CD2 4.49Å
22L95.9Very high96.3Very high62 Ų6272.9 Ų72.933%0.32539%0.393SS..Hα-helixtrans-60.9-41.6176-68177.7000112.1W18 E19 L24 L25 Q26W18-L22 HydrophobicContact CD2-CD1 4.4Å; W18-L22 HydrophobicContact CD2-CG 4.4Å; W18-L22 HydrophobicContact CH2-CD2 4.17Å; W18-L22 HydrophobicContact CZ2-CD1 4.05Å; W18-L22 HydrophobicContact CZ2-CD2 3.99Å; W18-L22 HydrophobicContact CZ2-CG 4.2Å; W18-L22 PolarHBondContact O-N 3.45Å; E19-L22 PolarHBondContact O-N 3.05Å; L22-L24 VanDerWaalsContact C-N 3.32Å; L22-L24 PolarHBondContact O-N 3.18Å; L22-L25 PolarHBondContact O-N 3.1Å; L22-Q26 WeakPolarHBondContact O-CG 3.47Å; L22-Q26 PolarHBondContact O-N 3.47Å
23G97.5Very high96.3Very high35 Ų3573.5 Ų73.536%0.36140%0.4SS..Hα-helixtrans-62-36.4175.900000113.5E19 S20 Y21 Q26 A27E19-G23 PolarHBondContact O-N 3.47Å; S20-G23 PolarHBondContact O-N 3.07Å; Y21-G23 VanDerWaalsContact C-N 3.34Å; Y21-G23 PolarHBondContact O-N 3.11Å; G23-Q26 PolarHBondContact O-N 3.31Å; G23-A27 PolarHBondContact O-N 2.88Å; G23-A27 VanDerWaalsContact O-N 3.12Å
24L97.3Very high96.3Very high36 Ų3670.2 Ų70.219%0.18838%0.38CS..Hα-helixtrans-68.9-41.1174.5-71.9165000111.9S20 Y21 L22 Q26 A27 E28 Y29 A34 A37 L38S20-L24 VanDerWaalsContact O-CG 3.28Å; S20-L24 WeakPolarHBondContact O-CG 3.43Å; S20-L24 PolarHBondContact O-N 2.84Å; Y21-L24 PolarHBondContact O-N 3.09Å; L22-L24 VanDerWaalsContact C-N 3.32Å; L22-L24 PolarHBondContact O-N 3.18Å; L24-Q26 VanDerWaalsContact C-N 3.33Å; L24-Q26 PolarHBondContact O-N 3.32Å; L24-A27 CarbonylContact O-C 3.57Å; L24-A27 PolarHBondContact O-N 2.95Å; L24-A27 VanDerWaalsContact O-N 3.14Å; L24-E28 PolarHBondContact O-N 3.13Å; L24-Y29 HydrophobicContact CD2-CD1 4.4Å; L24-Y29 HydrophobicContact CD2-CD2 4.26Å; L24-Y29 HydrophobicContact CD2-CE1 4.48Å; L24-Y29 HydrophobicContact CD2-CE2 4.36Å; L24-Y29 HydrophobicContact CD2-CG 4.3Å; L24-Y29 WeakPolarHBondContact O-CB 3.09Å; L24-Y29 PolarHBondContact O-N 3.31Å; L24-Y29 VanDerWaalsContact O-N 3.16Å; L24-A34 HydrophobicContact CB-CB 3.76Å; L24-A34 HydrophobicContact CD1-CB 4.1Å; L24-A37 HydrophobicContact CD1-CB 4.04Å; L24-L38 HydrophobicContact CD1-CD1 4.4Å; L24-L38 HydrophobicContact CD1-CD2 4.16Å; L24-L38 HydrophobicContact CD1-CG 3.93Å
25L96.2Very high96.3Very high59 Ų5970.3 Ų70.331%0.30938%0.381SS..Hα-helixtrans-64.6-37.6175-65.1-177.5000112Y21 L22 A27 E28 E31 A34Y21-L25 HydrophobicContact CD1-CD1 4.17Å; Y21-L25 HydrophobicContact CE1-CD1 3.58Å; Y21-L25 HydrophobicContact CE1-CG 4.36Å; Y21-L25 HydrophobicContact CE2-CD1 4.29Å; Y21-L25 HydrophobicContact CE2-CD2 4.24Å; Y21-L25 HydrophobicContact CE2-CG 4.27Å; Y21-L25 WeakPolarHBondContact O-CG 3.27Å; Y21-L25 PolarHBondContact O-N 3.3Å; L22-L25 PolarHBondContact O-N 3.1Å; L25-A27 PolarHBondContact O-N 3.44Å; L25-E28 PolarHBondContact O-N 3.02Å; L25-E28 VanDerWaalsContact O-N 3.14Å; L25-E31 HydrophobicContact CD2-CG 4.04Å; L25-A34 HydrophobicContact CD2-CB 4.36Å
26Q96.6Very high96.3Very high163 Ų16373.4 Ų73.476%0.76239%0.39SS*.Hα-helixtrans-65.5-28173.5-73.1175.16.700112.7L22 G23 L24 E28L22-Q26 WeakPolarHBondContact O-CG 3.47Å; L22-Q26 PolarHBondContact O-N 3.47Å; G23-Q26 PolarHBondContact O-N 3.31Å; L24-Q26 VanDerWaalsContact C-N 3.33Å; L24-Q26 PolarHBondContact O-N 3.32Å; Q26-E28 PolarHBondContact O-N 3.38Å
27A96.6Very high96.3Very high60 Ų6071.3 Ų71.350%0.49639%0.388SS..THydrogen-bonded Turntrans-85.118.3173.500000113.4G23 L24 L25 Y29G23-A27 PolarHBondContact O-N 2.88Å; G23-A27 VanDerWaalsContact O-N 3.12Å; L24-A27 CarbonylContact O-C 3.57Å; L24-A27 PolarHBondContact O-N 2.95Å; L24-A27 VanDerWaalsContact O-N 3.14Å; L25-A27 PolarHBondContact O-N 3.44Å; A27-Y29 VanDerWaalsContact C-N 3.28Å; A27-Y29 HydrophobicContact CB-CD2 4.07Å; A27-Y29 HydrophobicContact CB-CE2 4.27Å; A27-Y29 PolarHBondContact O-N 2.94Å
28E95Very high96.3Very high187 Ų18771.2 Ų71.287%0.87439%0.389SS*.THydrogen-bonded Turntrans6323.7176.8-54-171.4128.300115.3L24 L25 Q26L24-E28 PolarHBondContact O-N 3.13Å; L25-E28 PolarHBondContact O-N 3.02Å; L25-E28 VanDerWaalsContact O-N 3.14Å; Q26-E28 PolarHBondContact O-N 3.38Å
29Y95.5Very high96.3Very high122 Ų12271.4 Ų71.448%0.47840%0.401SS..  trans-71.3145168.1-77.7-114.6000110.3L24 A27 D33L24-Y29 HydrophobicContact CD2-CD1 4.4Å; L24-Y29 HydrophobicContact CD2-CD2 4.26Å; L24-Y29 HydrophobicContact CD2-CE1 4.48Å; L24-Y29 HydrophobicContact CD2-CE2 4.36Å; L24-Y29 HydrophobicContact CD2-CG 4.3Å; L24-Y29 WeakPolarHBondContact O-CB 3.09Å; L24-Y29 PolarHBondContact O-N 3.31Å; L24-Y29 VanDerWaalsContact O-N 3.16Å; A27-Y29 VanDerWaalsContact C-N 3.28Å; A27-Y29 HydrophobicContact CB-CD2 4.07Å; A27-Y29 HydrophobicContact CB-CE2 4.27Å; A27-Y29 PolarHBondContact O-N 2.94Å; Y29-D33 HydrophobicContact CD1-CB 3.97Å
30T96.2Very high96.3Very high73 Ų7363.5 Ų63.545%0.44837%0.365SS..  trans-65.5154.916873.70000110.1G32 D33 A34T30-G32 PolarHBondContact O-N 3.02Å; T30-D33 PolarHBondContact O-N 2.94Å; T30-D33 VanDerWaalsContact O-N 3.16Å; T30-D33 WeakPolarHBondContact OG1-CB 3.45Å; T30-D33 PolarHBondContact OG1-N 3.19Å; T30-D33 VanDerWaalsContact OG1-N 3.12Å; T30-D33 PolarHBondContact OG1-OD2 3.46Å; T30-A34 WeakPolarHBondContact O-CB 3.22Å; T30-A34 PolarHBondContact O-N 3.16Å
31E95.5Very high96.2Very high112 Ų11269.6 Ų69.652%0.52338%0.383SS..Hα-helixtrans-59.7-34.2178.5-58.589.715700111.3L25 L35 L50L25-E31 HydrophobicContact CD2-CG 4.04Å; E31-L35 VanDerWaalsContact O-CD1 3.27Å; E31-L35 WeakPolarHBondContact O-CD1 3.37Å; E31-L35 WeakPolarHBondContact O-CG 3.41Å; E31-L35 PolarHBondContact O-N 3.03Å; E31-L50 HydrophobicContact CB-CD2 3.83Å; E31-L50 HydrophobicContact CG-CD2 4.42Å
32G95.7Very high96.1Very high32 Ų3275 Ų7533%0.3340%0.403SS..Hα-helixtrans-60.5-56.1173.600000111.9T30 A34 L35 D36 R46T30-G32 PolarHBondContact O-N 3.02Å; G32-A34 VanDerWaalsContact C-N 3.31Å; G32-A34 PolarHBondContact O-N 3.27Å; G32-L35 PolarHBondContact O-N 3.39Å; G32-L35 VanDerWaalsContact O-N 3.16Å; G32-D36 PolarHBondContact O-N 3.16Å; G32-R46 PolarHBondContact O-NH1 3.28Å
33D96.2Very high96.2Very high88 Ų8881.2 Ų81.247%0.47142%0.424SS..Hα-helixtrans-63.5-38-177.1-61.8-38.1000111.8Y29 T30 L35 D36 A37Y29-D33 HydrophobicContact CD1-CB 3.97Å; T30-D33 PolarHBondContact O-N 2.94Å; T30-D33 VanDerWaalsContact O-N 3.16Å; T30-D33 WeakPolarHBondContact OG1-CB 3.45Å; T30-D33 PolarHBondContact OG1-N 3.19Å; T30-D33 VanDerWaalsContact OG1-N 3.12Å; T30-D33 PolarHBondContact OG1-OD2 3.46Å; D33-L35 VanDerWaalsContact C-N 3.35Å; D33-L35 PolarHBondContact O-N 2.89Å; D33-D36 PolarHBondContact O-N 3.12Å; D33-A37 WeakPolarHBondContact O-CB 3.33Å; D33-A37 PolarHBondContact O-N 3.44Å
34A97.4Very high96.2Very high0 Ų079.9 Ų79.90%041%0.409CS..Hα-helixtrans-61.8-42.617600000111.6Y21 L24 L25 T30 G32 D36 A37 L38Y21-A34 HydrophobicContact CD2-CB 3.91Å; Y21-A34 HydrophobicContact CE2-CB 3.93Å; L24-A34 HydrophobicContact CB-CB 3.76Å; L24-A34 HydrophobicContact CD1-CB 4.1Å; L25-A34 HydrophobicContact CD2-CB 4.36Å; T30-A34 WeakPolarHBondContact O-CB 3.22Å; T30-A34 PolarHBondContact O-N 3.16Å; G32-A34 VanDerWaalsContact C-N 3.31Å; G32-A34 PolarHBondContact O-N 3.27Å; A34-D36 VanDerWaalsContact C-N 3.35Å; A34-A37 PolarHBondContact O-N 3.13Å; A34-L38 WeakPolarHBondContact O-CG 3.46Å; A34-L38 PolarHBondContact O-N 3.41Å; A34-L38 VanDerWaalsContact O-N 3.07Å
35L97Very high96.1Very high3 Ų378.3 Ų78.32%0.01640%0.401CS..Hα-helixtrans-68.3-34.7177.4-67.4167.5000112.7Y21 E31 G32 D33 L38 G39 L40 R46 L49 L50Y21-L35 HydrophobicContact CD2-CD2 4.27Å; Y21-L35 HydrophobicContact CE2-CD2 4.08Å; Y21-L35 HydrophobicContact CE2-CG 4.15Å; E31-L35 VanDerWaalsContact O-CD1 3.27Å; E31-L35 WeakPolarHBondContact O-CD1 3.37Å; E31-L35 WeakPolarHBondContact O-CG 3.41Å; E31-L35 PolarHBondContact O-N 3.03Å; G32-L35 PolarHBondContact O-N 3.39Å; G32-L35 VanDerWaalsContact O-N 3.16Å; D33-L35 VanDerWaalsContact C-N 3.35Å; D33-L35 PolarHBondContact O-N 2.89Å; L35-L38 PolarHBondContact O-N 3.06Å; L35-G39 PolarHBondContact O-N 3Å; L35-L40 HydrophobicContact CD2-CD1 3.89Å; L35-L40 WeakPolarHBondContact O-CB 3.28Å; L35-L40 PolarHBondContact O-N 3.34Å; L35-L40 VanDerWaalsContact O-N 3.11Å; L35-R46 HydrophobicContact CB-CG 4.31Å; L35-R46 HydrophobicContact CD1-CB 4.13Å; L35-R46 HydrophobicContact CD1-CG 4.08Å; L35-R46 HydrophobicContact CD2-CG 4.47Å; L35-L49 HydrophobicContact CD2-CB 3.93Å; L35-L49 HydrophobicContact CD2-CD1 3.62Å; L35-L49 HydrophobicContact CD2-CG 4.39Å; L35-L50 HydrophobicContact CD1-CD1 3.74Å; L35-L50 HydrophobicContact CD1-CD2 3.75Å; L35-L50 HydrophobicContact CD1-CG 3.66Å
36D96.4Very high96.2Very high92 Ų9277.6 Ų77.649%0.49239%0.394SS..Hα-helixtrans-67.8-45.3174.5-82.5-62.3000111.8G32 D33 A34 L38 G39 R46G32-D36 PolarHBondContact O-N 3.16Å; D33-D36 PolarHBondContact O-N 3.12Å; A34-D36 VanDerWaalsContact C-N 3.35Å; D36-L38 PolarHBondContact O-N 3.49Å; D36-G39 PolarHBondContact O-N 3.29Å; D36-R46 IonicContact OD1-CZ 3.71Å; D36-R46 IonicContact OD1-NH1 3.92Å; D36-R46 IonicContact OD1-NH2 2.64Å; D36-R46 PolarHBondContact OD1-NH2 3.49Å; D36-R46 IonicContact OD2-CZ 3.37Å; D36-R46 IonicContact OD2-NH1 2.83Å; D36-R46 PolarHBondContact OD2-NH1 2.66Å; D36-R46 IonicContact OD2-NH2 2.99Å; D36-R46 PolarHBondContact OD2-NH2 3.14Å
37A96.3Very high96.2Very high67 Ų6775.2 Ų75.255%0.55438%0.378SS*.Hα-helixtrans-58.1-35.8173.500000112.1L24 D33 A34 G39L24-A37 HydrophobicContact CD1-CB 4.04Å; D33-A37 WeakPolarHBondContact O-CB 3.33Å; D33-A37 PolarHBondContact O-N 3.44Å; A34-A37 PolarHBondContact O-N 3.13Å; A37-G39 PolarHBondContact O-N 3.48Å
38L95.8Very high96.2Very high27 Ų2773.1 Ų73.114%0.14136%0.358CS..THydrogen-bonded Turntrans-75.8-0.9174.7-67.4171.5000114K17 Y21 L24 A34 L35 D36 L40 L49K17-L38 HydrophobicContact CB-CD1 4.48Å; K17-L38 HydrophobicContact CD-CB 4.47Å; K17-L38 PolarHBondContact NZ-O 2.92Å; Y21-L38 HydrophobicContact CD2-CD1 4.04Å; Y21-L38 HydrophobicContact CG-CD1 4.33Å; L24-L38 HydrophobicContact CD1-CD1 4.4Å; L24-L38 HydrophobicContact CD1-CD2 4.16Å; L24-L38 HydrophobicContact CD1-CG 3.93Å; A34-L38 WeakPolarHBondContact O-CG 3.46Å; A34-L38 PolarHBondContact O-N 3.41Å; A34-L38 VanDerWaalsContact O-N 3.07Å; L35-L38 PolarHBondContact O-N 3.06Å; D36-L38 PolarHBondContact O-N 3.49Å; L38-L40 HydrophobicContact CB-CD1 4.45Å; L38-L40 HydrophobicContact CB-CG 4.32Å; L38-L40 PolarHBondContact O-N 3.18Å; L38-L49 HydrophobicContact CD1-CD1 3.95Å
39G95.5Very high96.3Very high37 Ų3764.3 Ų64.338%0.38132%0.317SS..THydrogen-bonded Turntrans68.133.6178.900000113.7K12 L35 D36 A37 K41K12-G39 PolarHBondContact NZ-O 2.99Å; K12-G39 VanDerWaalsContact NZ-O 3.14Å; L35-G39 PolarHBondContact O-N 3Å; D36-G39 PolarHBondContact O-N 3.29Å; A37-G39 PolarHBondContact O-N 3.48Å; G39-K41 PolarHBondContact O-N 2.92Å
40L95.6Very high96.3Very high2 Ų263 Ų631%0.0132%0.318CS..  trans-94.985.1177.7-65.6178.2000111.6K12 I14 K17 L35 L38 C45 R46 L49K12-L40 HydrophobicContact CD-CD2 4.48Å; I14-L40 HydrophobicContact CD1-CD1 4.49Å; I14-L40 HydrophobicContact CD1-CD2 3.64Å; K17-L40 HydrophobicContact CD-CD1 4.38Å; K17-L40 HydrophobicContact CD-CD2 4.03Å; K17-L40 HydrophobicContact CD-CG 4.32Å; L35-L40 HydrophobicContact CD2-CD1 3.89Å; L35-L40 WeakPolarHBondContact O-CB 3.28Å; L35-L40 PolarHBondContact O-N 3.34Å; L35-L40 VanDerWaalsContact O-N 3.11Å; L38-L40 HydrophobicContact CB-CD1 4.45Å; L38-L40 HydrophobicContact CB-CG 4.32Å; L38-L40 PolarHBondContact O-N 3.18Å; L40-C45 HydrophobicContact CD2-CB 4.36Å; L40-R46 HydrophobicContact CB-CG 4Å; L40-R46 WeakPolarHBondContact O-CG 3.49Å; L40-R46 VanDerWaalsContact O-CZ 3.23Å; L40-R46 PolarHBondContact O-NE 3.23Å; L40-R46 PolarHBondContact O-NH2 3.21Å; L40-L49 HydrophobicContact CD1-CD1 3.32Å; L40-L49 HydrophobicContact CD1-CG 4.36Å
41K93.9Very high96.3Very high191 Ų19163.7 Ų63.783%0.8333%0.326SS*.  trans-72.1-36.6-178.4-59.8-172.5177.7-173.60114.6G39G39-K41 PolarHBondContact O-N 2.92Å
42R96.2Very high96.3Very high128 Ų12859.8 Ų59.848%0.48331%0.308SS..SBendtrans-88.8132.7-174.2-63.7-174-66.6-110.83.3111.8C44 C45 R46R42-C44 PolarHBondContact O-N 3.44Å; R42-C45 PolarHBondContact NE-SG 3.26Å; R42-C45 PolarHBondContact O-N 3.33Å; R42-R46 PolarHBondContact O-N 2.97Å; R42-R46 VanDerWaalsContact O-N 3.08Å
43Y97Very high96.2Very high191 Ų19163 Ų6375%0.74932%0.32SS*.Hα-helixtrans-54.6-36.6176.965.6-92.1000112.9C45 R46 R47Y43-C45 VanDerWaalsContact C-N 3.27Å; Y43-C45 PolarHBondContact O-N 3.05Å; Y43-R46 PolarHBondContact O-N 3.21Å; Y43-R47 PolarHBondContact O-N 3.39Å
44C97.6Very high96Very high8 Ų860.7 Ų60.75%0.05431%0.308CS..Hα-helixtrans-64.8-31.3-17960.80000113.1C7 T9 R42 R47C7-C44 VanDerWaalsContact SG-C 3.59Å; C7-C44 PolarHBondContact SG-O 3.08Å; T9-C44 HydrophobicContact CG2-CB 4.12Å; R42-C44 PolarHBondContact O-N 3.44Å; C44-R47 WeakPolarHBondContact O-CG 3.45Å; C44-R47 PolarHBondContact O-NE 3.12Å
45C97.1Very high95.8Very high2 Ų264.5 Ų64.51%0.01433%0.328CS..Hα-helixtrans-88.9-27.1176.6-28.50000110.5C7 C10 I14 L40 R42 Y43 M48C7-C45 HydrophobicContact CB-CB 4.2Å; C10-C45 WeakPolarHBondContact CB-SG 3.39Å; C10-C45 WeakPolarHBondContact SG-CB 3.29Å; C10-C45 CovalentContact SG-SG 2.1Å; C10-C45 PolarHBondContact SG-SG 3.42Å; I14-C45 HydrophobicContact CD1-CB 3.93Å; L40-C45 HydrophobicContact CD2-CB 4.36Å; R42-C45 PolarHBondContact NE-SG 3.26Å; R42-C45 PolarHBondContact O-N 3.33Å; Y43-C45 VanDerWaalsContact C-N 3.27Å; Y43-C45 PolarHBondContact O-N 3.05Å; C45-M48 WeakPolarHBondContact O-CB 3.35Å
46R97.2Very high95.5Very high45 Ų4566.8 Ų66.817%0.1734%0.34CS..Hα-helixtrans-64.6-45.3171.8-74-170.4-176.9-124.6-1.6113.5G32 L35 D36 L40 R42 Y43 M48 L49 L50G32-R46 PolarHBondContact O-NH1 3.28Å; L35-R46 HydrophobicContact CB-CG 4.31Å; L35-R46 HydrophobicContact CD1-CB 4.13Å; L35-R46 HydrophobicContact CD1-CG 4.08Å; L35-R46 HydrophobicContact CD2-CG 4.47Å; D36-R46 IonicContact OD1-CZ 3.71Å; D36-R46 IonicContact OD1-NH1 3.92Å; D36-R46 IonicContact OD1-NH2 2.64Å; D36-R46 PolarHBondContact OD1-NH2 3.49Å; D36-R46 IonicContact OD2-CZ 3.37Å; D36-R46 IonicContact OD2-NH1 2.83Å; D36-R46 PolarHBondContact OD2-NH1 2.66Å; D36-R46 IonicContact OD2-NH2 2.99Å; D36-R46 PolarHBondContact OD2-NH2 3.14Å; L40-R46 HydrophobicContact CB-CG 4Å; L40-R46 WeakPolarHBondContact O-CG 3.49Å; L40-R46 VanDerWaalsContact O-CZ 3.23Å; L40-R46 PolarHBondContact O-NE 3.23Å; L40-R46 PolarHBondContact O-NH2 3.21Å; R42-R46 PolarHBondContact O-N 2.97Å; R42-R46 VanDerWaalsContact O-N 3.08Å; Y43-R46 PolarHBondContact O-N 3.21Å; R46-M48 PolarHBondContact O-N 2.78Å; R46-M48 VanDerWaalsContact O-N 3.09Å; R46-L49 PolarHBondContact O-N 2.92Å; R46-L50 HydrophobicContact CB-CD1 4.48Å; R46-L50 PolarHBondContact O-N 3.16Å; R46-L50 VanDerWaalsContact O-N 3.13Å
47R97.1Very high95.3Very high112 Ų11268.7 Ų68.742%0.42335%0.346SS..Hα-helixtrans-57.7-28.6-179.682.2-171.2168.9168.82.9112.5T9 Y43 C44 L49 L50 S51T9-R47 PolarHBondContact OG1-NH2 3.48Å; Y43-R47 PolarHBondContact O-N 3.39Å; C44-R47 WeakPolarHBondContact O-CG 3.45Å; C44-R47 PolarHBondContact O-NE 3.12Å; R47-L49 PolarHBondContact O-N 3.14Å; R47-L50 PolarHBondContact O-N 3.49Å; R47-S51 WeakPolarHBondContact O-CB 3.37Å; R47-S51 PolarHBondContact O-N 3.32Å; R47-S51 PolarHBondContact O-OG 3.11Å
48M96.8Very high95Very high16 Ų1672.2 Ų72.28%0.07935%0.348CS..Hα-helixtrans-63.2-30178.8-57-72.187.200112.9C7 F8 I14 C45 R46 H52C7-M48 HydrophobicContact CB-CG 3.93Å; C7-M48 HydrophobicContact CB-SD 4.4Å; F8-M48 HydrophobicContact CB-SD 4.3Å; F8-M48 HydrophobicContact CD2-CE 3.75Å; F8-M48 HydrophobicContact CD2-SD 3.57Å; F8-M48 VanDerWaalsContact CD2-SD 3.57Å; F8-M48 HydrophobicContact CE2-CE 4.32Å; F8-M48 HydrophobicContact CE2-SD 4.06Å; F8-M48 HydrophobicContact CG-SD 3.96Å; I14-M48 HydrophobicContact CG2-CB 4.04Å; C45-M48 WeakPolarHBondContact O-CB 3.35Å; R46-M48 PolarHBondContact O-N 2.78Å; R46-M48 VanDerWaalsContact O-N 3.09Å; M48-H52 WeakPolarHBondContact O-CB 3.39Å
49L96Very high94.8Very high2 Ų275.4 Ų75.41%0.0137%0.365CS..Hα-helixtrans-89.4-46.7174.4-71.2172.4000110.9I3 I14 K17 W18 Y21 L35 L38 L40 R46 R47 S51 H52I3-L49 HydrophobicContact CD1-CD2 3.31Å; I3-L49 HydrophobicContact CD1-CG 4.37Å; I14-L49 HydrophobicContact CG2-CD2 4.24Å; I14-L49 HydrophobicContact CG2-CG 4.23Å; K17-L49 HydrophobicContact CB-CD1 4.44Å; W18-L49 HydrophobicContact CE3-CD2 3.68Å; W18-L49 HydrophobicContact CZ3-CD2 4.35Å; Y21-L49 HydrophobicContact CD1-CB 4.41Å; Y21-L49 HydrophobicContact CD2-CD1 4.45Å; Y21-L49 HydrophobicContact CE1-CB 4.5Å; Y21-L49 HydrophobicContact CG-CD1 4.33Å; Y21-L49 HydrophobicContact CG-CD2 4.49Å; L35-L49 HydrophobicContact CD2-CB 3.93Å; L35-L49 HydrophobicContact CD2-CD1 3.62Å; L35-L49 HydrophobicContact CD2-CG 4.39Å; L38-L49 HydrophobicContact CD1-CD1 3.95Å; L40-L49 HydrophobicContact CD1-CD1 3.32Å; L40-L49 HydrophobicContact CD1-CG 4.36Å; R46-L49 PolarHBondContact O-N 2.92Å; R47-L49 PolarHBondContact O-N 3.14Å; L49-S51 VanDerWaalsContact C-N 3.3Å; L49-S51 PolarHBondContact O-N 2.98Å; L49-H52 PolarHBondContact O-N 3.48Å
50L96Very high94.6Very high94 Ų9479.9 Ų79.949%0.49238%0.38SS..Hα-helixtrans-59.3-37.9-176.6-73.1171.5000113.7E31 L35 R46 R47E31-L50 HydrophobicContact CB-CD2 3.83Å; E31-L50 HydrophobicContact CG-CD2 4.42Å; L35-L50 HydrophobicContact CD1-CD1 3.74Å; L35-L50 HydrophobicContact CD1-CD2 3.75Å; L35-L50 HydrophobicContact CD1-CG 3.66Å; R46-L50 HydrophobicContact CB-CD1 4.48Å; R46-L50 PolarHBondContact O-N 3.16Å; R46-L50 VanDerWaalsContact O-N 3.13Å; R47-L50 PolarHBondContact O-N 3.49Å
51S95.5Very high94.3Very high89 Ų8986 Ų8662%0.62241%0.412SS*.THydrogen-bonded Turntrans-101.811-177.478.60000113.4R47 L49R47-S51 WeakPolarHBondContact O-CB 3.37Å; R47-S51 PolarHBondContact O-N 3.32Å; R47-S51 PolarHBondContact O-OG 3.11Å; L49-S51 VanDerWaalsContact C-N 3.3Å; L49-S51 PolarHBondContact O-N 2.98Å
52H95.2Very high94.1Very high30 Ų3085.4 Ų85.414%0.13941%0.406CS..  trans-79135.8178.7-179.5-106.5000110.3M1 I3 W18 M48 L49M1-H52 PolarHBondContact O-CE1 3.49Å; M1-H52 PolarHBondContact O-NE2 3.14Å; I3-H52 VanDerWaalsContact CA-NE2 3.29Å; I3-H52 WeakPolarHBondContact CA-NE2 3.38Å; I3-H52 PolarHBondContact N-NE2 3.48Å; I3-H52 VanDerWaalsContact N-NE2 3.18Å; W18-H52 AromaticContact CD2-ND1 3.84Å; W18-H52 AromaticContact CE2-CE1 3.98Å; W18-H52 AromaticContact CE2-ND1 3.56Å; W18-H52 AromaticContact CE3-ND1 3.87Å; W18-H52 HydrophobicContact CH2-CB 4.2Å; W18-H52 AromaticContact CH2-ND1 3.38Å; W18-H52 WeakPolarHBondContact CH2-ND1 3.34Å; W18-H52 AromaticContact CZ2-ND1 3.34Å; W18-H52 VanDerWaalsContact CZ2-ND1 3.34Å; W18-H52 WeakPolarHBondContact CZ2-ND1 3.38Å; W18-H52 HydrophobicContact CZ3-CB 3.99Å; W18-H52 AromaticContact CZ3-ND1 3.65Å; M48-H52 WeakPolarHBondContact O-CB 3.39Å; L49-H52 PolarHBondContact O-N 3.48Å
53V93.9Very high93.8Very high99 Ų9985.1 Ų85.160%0.641%0.41SS*.  trans-122.7113.4174.5-178.80000108.2M1 L55M1-V53 PolarHBondContact N-O 2.98Å; V53-L55 HydrophobicContact CG1-CD2 3.76Å; V53-L55 HydrophobicContact CG1-CG 4.15Å; V53-L55 PolarHBondContact O-N 3.48Å
54D92Very high93.3Very high39 Ų3984.8 Ų84.821%0.20942%0.42CS..  trans-82.282.7-178-158.4-0.9000113W18 I56W18-D54 HydrophobicContact CZ2-CB 4.19Å; D54-I56 PolarHBondContact O-N 3.25Å; D54-I56 WeakPolarHBondContact OD1-CB 3.07Å; D54-I56 WeakPolarHBondContact OD1-CG2 3.43Å; D54-I56 PolarHBondContact OD1-N 3.41Å; D54-I56 VanDerWaalsContact OD1-N 3.11Å
55L92.8Very high92.4Very high80 Ų8088 Ų8842%0.41945%0.448SS..  trans-73.1-6.7174.2-52.7172.4000114.3M1 V53 E57 K58 L59M1-L55 VanDerWaalsContact N-N 3.11Å; V53-L55 HydrophobicContact CG1-CD2 3.76Å; V53-L55 HydrophobicContact CG1-CG 4.15Å; V53-L55 PolarHBondContact O-N 3.48Å; L55-E57 VanDerWaalsContact C-N 3.31Å; L55-E57 PolarHBondContact O-N 3.41Å; L55-K58 PolarHBondContact O-N 3.08Å; L55-L59 WeakPolarHBondContact O-CG 3.47Å; L55-L59 PolarHBondContact O-N 2.94Å
56I92.6Very high91.2Very high51 Ų5195.2 Ų95.226%0.26248%0.481SS..Hα-helixtrans-64.1-39.9-174.5-162.958.1000111.3I2 D54 K58 L59 L60I2-I56 HydrophobicContact CG1-CB 4.18Å; I2-I56 HydrophobicContact CG1-CG1 4.1Å; I2-I56 HydrophobicContact CG1-CG2 4.35Å; D54-I56 PolarHBondContact O-N 3.25Å; D54-I56 WeakPolarHBondContact OD1-CB 3.07Å; D54-I56 WeakPolarHBondContact OD1-CG2 3.43Å; D54-I56 PolarHBondContact OD1-N 3.41Å; D54-I56 VanDerWaalsContact OD1-N 3.11Å; I56-K58 PolarHBondContact O-N 3.38Å; I56-L59 PolarHBondContact O-N 3.3Å; I56-L59 VanDerWaalsContact O-N 3.08Å; I56-L60 HydrophobicContact CG1-CD1 4.2Å; I56-L60 HydrophobicContact CG1-CG 4.23Å; I56-L60 VanDerWaalsContact O-CG 3.27Å; I56-L60 WeakPolarHBondContact O-CG 3.48Å; I56-L60 PolarHBondContact O-N 3.44Å
57E90.5Very high89.3Confident132 Ų132106.4 Ų106.462%0.61753%0.531SS*.Hα-helixtrans-58.7-38.1179.7-62.4-175168.800112.1L55 N61L55-E57 VanDerWaalsContact C-N 3.31Å; L55-E57 PolarHBondContact O-N 3.41Å; E57-N61 PolarHBondContact O-ND2 3.17Å; E57-N61 VanDerWaalsContact O-ND2 3.12Å
58K90.7Very high88.9Confident141 Ų141106.2 Ų106.261%0.61354%0.536SS*.Hα-helixtrans-71.2-40177.6-65.5-174179.6-177.50111.8L55 I56 N61 Y62L55-K58 PolarHBondContact O-N 3.08Å; I56-K58 PolarHBondContact O-N 3.38Å; K58-N61 PolarHBondContact O-ND2 3.21Å; K58-Y62 WeakPolarHBondContact O-CE2 3.27Å
59L91.1Very high88.4Confident95 Ų95110.9 Ų110.950%0.49756%0.561SS.*Hα-helixtrans-71.5-31.5-178.7-68174.8000112.6L55 I56 N61 Y62L55-L59 WeakPolarHBondContact O-CG 3.47Å; L55-L59 PolarHBondContact O-N 2.94Å; I56-L59 PolarHBondContact O-N 3.3Å; I56-L59 VanDerWaalsContact O-N 3.08Å; L59-N61 PolarHBondContact O-N 3.17Å; L59-N61 VanDerWaalsContact O-N 3.17Å; L59-Y62 PolarHBondContact O-N 3.42Å
60L90.9Very high88Confident130 Ų130116.9 Ų116.968%0.68159%0.591SS**THydrogen-bonded Turntrans-63-18.6178.6-74.2170.1000113.7I56 Y62I56-L60 HydrophobicContact CG1-CD1 4.2Å; I56-L60 HydrophobicContact CG1-CG 4.23Å; I56-L60 VanDerWaalsContact O-CG 3.27Å; I56-L60 WeakPolarHBondContact O-CG 3.48Å; I56-L60 PolarHBondContact O-N 3.44Å; L60-Y62 VanDerWaalsContact C-N 3.26Å; L60-Y62 PolarHBondContact O-N 3.12Å
61N89.3Confident87.6Confident130 Ų130118.3 Ų118.370%0.69560%0.597SS**THydrogen-bonded Turntrans-76.1-11.8177.8-61.8-48.1000113.8E57 K58 L59E57-N61 PolarHBondContact O-ND2 3.17Å; E57-N61 VanDerWaalsContact O-ND2 3.12Å; K58-N61 PolarHBondContact O-ND2 3.21Å; L59-N61 PolarHBondContact O-N 3.17Å; L59-N61 VanDerWaalsContact O-N 3.17Å
62Y91.6Very high87.1Confident180 Ų180120.1 Ų120.171%0.70660%0.595SS**SBendtrans-100.3130.3-178.4-63.3-80.4000110.9K58 L59 L60K58-Y62 WeakPolarHBondContact O-CE2 3.27Å; L59-Y62 PolarHBondContact O-N 3.42Å; L60-Y62 VanDerWaalsContact C-N 3.26Å; L60-Y62 PolarHBondContact O-N 3.12Å
63H88.8Confident86.5Confident122 Ų122126.1 Ų126.157%0.56563%0.626SS**  trans-83.4132.9171-169.355.9000110.3A65 E66H63-A65 PolarHBondContact O-N 3.48Å; H63-A65 VanDerWaalsContact O-N 3.08Å; H63-E66 HydrophobicContact CB-CG 4.24Å; H63-E66 PolarHBondContact O-N 3.28Å
64L86.6Confident86Confident183 Ų183128.1 Ų128.196%0.95863%0.628SS**THydrogen-bonded Turntrans-62.5-18.9-176.7-67.9171.9000114.1
65A79.1Confident85.5Confident76 Ų76134.9 Ų134.963%0.62866%0.66SS**THydrogen-bonded Turntrans-99.8-2.2-176.400000114.6H63 K67H63-A65 PolarHBondContact O-N 3.48Å; H63-A65 VanDerWaalsContact O-N 3.08Å; A65-K67 PolarHBondContact O-N 3.08Å
66E70.8Confident84.9Confident153 Ų153139.5 Ų139.572%0.71568%0.68SS**  trans-84.5112.3172.7-71.6179.2166.600109H63H63-E66 HydrophobicContact CB-CG 4.24Å; H63-E66 PolarHBondContact O-N 3.28Å
67K57.3Low84.2Confident281 Ų281147.5 Ų147.5100%1.22272%0.718SS**  trans-92.50168.8-76-171.9179.3-179.20110.5A65A65-K67 PolarHBondContact O-N 3.08Å

Retrieved 67 of 67 residues in 21.1 ms (Link to these results)