A0A087WNU3_MOUSE Loading...

Ly6/neurotoxin 1

AlphaFold DB , UniProt , Accession A0A087WNU3, Species MOUSE (Mus musculus, Mouse), Gene Lynx1, Length 34 aa.

>A0A087WNU3_MOUSE|A0A087WNU3|Lynx1
MTHLLTVFLVALMGLPVAQALECHVCAYNGDNCF
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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M61Low78Confident217 Ų217116.8 Ų116.8100%1.06963%0.63SS**  0-49.30-56.8-133.4-170.900111.5H3 L4 L5M1-H3 PolarHBondContact O-N 2.99Å; M1-L4 PolarHBondContact O-N 3.25Å; M1-L5 PolarHBondContact O-N 3.42Å
2T70.4Confident78Confident107 Ų107113.3 Ų113.366%0.65661%0.611SS**Hα-helixtrans-54.9-43.3177.629.50000115.3L4 L5 T6T2-L4 VanDerWaalsContact C-N 3.31Å; T2-L4 PolarHBondContact O-N 3.32Å; T2-L5 WeakPolarHBondContact O-CB 3.17Å; T2-L5 PolarHBondContact O-N 3Å; T2-T6 PolarHBondContact O-N 3.49Å; T2-T6 PolarHBondContact O-OG1 2.97Å
3H75.4Confident78.1Confident155 Ų155116.5 Ų116.572%0.71862%0.622SS**Hα-helixtrans-60-38.4178.8-77.5-83.9000114M1 L5 T6 V7M1-H3 PolarHBondContact O-N 2.99Å; H3-L5 VanDerWaalsContact C-N 3.32Å; H3-T6 PolarHBondContact O-N 3.05Å; H3-V7 WeakPolarHBondContact O-CG2 3.28Å; H3-V7 PolarHBondContact O-N 3.4Å
4L84.7Confident77.9Confident140 Ų140110.8 Ų110.873%0.73360%0.604SS**Hα-helixtrans-70.5-35.7-178-153142000110.5M1 T2 V7 F8M1-L4 PolarHBondContact O-N 3.25Å; T2-L4 VanDerWaalsContact C-N 3.31Å; T2-L4 PolarHBondContact O-N 3.32Å; L4-V7 PolarHBondContact O-N 3.23Å; L4-F8 WeakPolarHBondContact O-CB 3.33Å; L4-F8 PolarHBondContact O-N 3.32Å
5L78.4Confident77.2Confident113 Ų113108.3 Ų108.359%0.59259%0.59SS**Hα-helixtrans-65-42.9172.7-159.2112.5000111.5M1 T2 H3 V7 F8 L9M1-L5 PolarHBondContact O-N 3.42Å; T2-L5 WeakPolarHBondContact O-CB 3.17Å; T2-L5 PolarHBondContact O-N 3Å; H3-L5 VanDerWaalsContact C-N 3.32Å; L5-V7 PolarHBondContact O-N 3.31Å; L5-F8 PolarHBondContact O-N 3.02Å; L5-L9 HydrophobicContact CD2-CD1 3.95Å; L5-L9 VanDerWaalsContact O-CG 3.28Å; L5-L9 WeakPolarHBondContact O-CG 3.37Å; L5-L9 PolarHBondContact O-N 3.24Å
6T82.1Confident76.7Confident81 Ų81106.2 Ų106.250%0.49758%0.583SS.*Hα-helixtrans-62-44.2176.9-44.70000111.7T2 H3 F8 L9 V10T2-T6 PolarHBondContact O-N 3.49Å; T2-T6 PolarHBondContact O-OG1 2.97Å; H3-T6 PolarHBondContact O-N 3.05Å; T6-F8 VanDerWaalsContact C-N 3.35Å; T6-L9 PolarHBondContact O-N 2.96Å; T6-V10 WeakPolarHBondContact O-CG2 3.21Å; T6-V10 PolarHBondContact O-N 3.33Å
7V82.2Confident76.2Confident103 Ų103106 Ų10662%0.62459%0.586SS**Hα-helixtrans-64-41.9177.1173.80000111.1H3 L4 L5 L9 V10 A11H3-V7 WeakPolarHBondContact O-CG2 3.28Å; H3-V7 PolarHBondContact O-N 3.4Å; L4-V7 PolarHBondContact O-N 3.23Å; L5-V7 PolarHBondContact O-N 3.31Å; V7-L9 PolarHBondContact O-N 2.83Å; V7-V10 PolarHBondContact O-N 2.9Å; V7-A11 WeakPolarHBondContact O-CB 3.17Å; V7-A11 PolarHBondContact O-N 2.94Å
8F78.7Confident75.9Confident129 Ų129103.2 Ų103.257%0.56658%0.579SS**Hα-helixtrans-63-42.1177.8-173.8-108.9000112.2L4 L5 T6 A11 L12L4-F8 WeakPolarHBondContact O-CB 3.33Å; L4-F8 PolarHBondContact O-N 3.32Å; L5-F8 PolarHBondContact O-N 3.02Å; T6-F8 VanDerWaalsContact C-N 3.35Å; F8-A11 PolarHBondContact O-N 3.32Å; F8-L12 HydrophobicContact CD1-CD1 3.55Å; F8-L12 HydrophobicContact CD1-CG 4.36Å; F8-L12 HydrophobicContact CE1-CD1 3.31Å; F8-L12 HydrophobicContact CE1-CG 4.12Å; F8-L12 HydrophobicContact CG-CD1 4.35Å; F8-L12 HydrophobicContact CZ-CD1 3.91Å; F8-L12 HydrophobicContact CZ-CD2 4.44Å; F8-L12 HydrophobicContact CZ-CG 4.27Å; F8-L12 WeakPolarHBondContact O-CB 3.45Å; F8-L12 VanDerWaalsContact O-CG 3.32Å; F8-L12 WeakPolarHBondContact O-CG 3.37Å; F8-L12 PolarHBondContact O-N 3.5Å
9L81.9Confident75.5Confident91 Ų91103.6 Ų103.648%0.47658%0.576SS.*Hα-helixtrans-63.7-45.1175.1-70.3170.3000111.4L5 T6 V7 A11 L12 M13L5-L9 HydrophobicContact CD2-CD1 3.95Å; L5-L9 VanDerWaalsContact O-CG 3.28Å; L5-L9 WeakPolarHBondContact O-CG 3.37Å; L5-L9 PolarHBondContact O-N 3.24Å; T6-L9 PolarHBondContact O-N 2.96Å; V7-L9 PolarHBondContact O-N 2.83Å; L9-A11 VanDerWaalsContact C-N 3.31Å; L9-A11 PolarHBondContact O-N 3.03Å; L9-L12 PolarHBondContact O-N 3.12Å; L9-M13 WeakPolarHBondContact O-CG 3.4Å; L9-M13 PolarHBondContact O-N 3.31Å
10V82.8Confident75.1Confident103 Ų103101.6 Ų101.662%0.62457%0.572SS**Hα-helixtrans-61.2-42176.5171.30000111.3T6 V7 M13 G14T6-V10 WeakPolarHBondContact O-CG2 3.21Å; T6-V10 PolarHBondContact O-N 3.33Å; V7-V10 PolarHBondContact O-N 2.9Å; V10-M13 PolarHBondContact O-N 3.39Å; V10-G14 PolarHBondContact O-N 3.31Å; V10-G14 VanDerWaalsContact O-N 3.12Å
11A80Confident74.7Confident46 Ų46102 Ų10238%0.3857%0.573SS.*Hα-helixtrans-61-47.9175.200000111.3V7 F8 L9 M13 G14 L15V7-A11 WeakPolarHBondContact O-CB 3.17Å; V7-A11 PolarHBondContact O-N 2.94Å; F8-A11 PolarHBondContact O-N 3.32Å; L9-A11 VanDerWaalsContact C-N 3.31Å; L9-A11 PolarHBondContact O-N 3.03Å; A11-M13 VanDerWaalsContact C-N 3.28Å; A11-M13 PolarHBondContact O-N 3.37Å; A11-G14 CarbonylContact O-C 3.54Å; A11-G14 PolarHBondContact O-N 3.49Å; A11-L15 HydrophobicContact CB-CD1 4.46Å; A11-L15 WeakPolarHBondContact O-CD1 3.32Å; A11-L15 PolarHBondContact O-N 3.31Å
12L78.1Confident75.2Confident75 Ų7598.3 Ų98.339%0.39355%0.553SS.*Hα-helixtrans-58.7-36.6177-77.9167.1000113.3F8 L9 G14 P16F8-L12 HydrophobicContact CD1-CD1 3.55Å; F8-L12 HydrophobicContact CD1-CG 4.36Å; F8-L12 HydrophobicContact CE1-CD1 3.31Å; F8-L12 HydrophobicContact CE1-CG 4.12Å; F8-L12 HydrophobicContact CG-CD1 4.35Å; F8-L12 HydrophobicContact CZ-CD1 3.91Å; F8-L12 HydrophobicContact CZ-CD2 4.44Å; F8-L12 HydrophobicContact CZ-CG 4.27Å; F8-L12 WeakPolarHBondContact O-CB 3.45Å; F8-L12 VanDerWaalsContact O-CG 3.32Å; F8-L12 WeakPolarHBondContact O-CG 3.37Å; F8-L12 PolarHBondContact O-N 3.5Å; L9-L12 PolarHBondContact O-N 3.12Å; L12-G14 VanDerWaalsContact C-N 3.32Å; L12-P16 WeakPolarHBondContact O-CD 3.35Å
13M80.1Confident75.2Confident155 Ų15595.9 Ų95.976%0.76454%0.54SS*.Hα-helixtrans-73.3-25.6177.2-59.7-67.2-87.600112.2L9 V10 A11L9-M13 WeakPolarHBondContact O-CG 3.4Å; L9-M13 PolarHBondContact O-N 3.31Å; V10-M13 PolarHBondContact O-N 3.39Å; A11-M13 VanDerWaalsContact C-N 3.28Å; A11-M13 PolarHBondContact O-N 3.37Å
14G74.4Confident75.3Confident36 Ų3694.8 Ų94.837%0.37154%0.535SS..Hα-helixtrans-89.4-22.1175.500000114.9V10 A11 L12 V17 A18V10-G14 PolarHBondContact O-N 3.31Å; V10-G14 VanDerWaalsContact O-N 3.12Å; A11-G14 CarbonylContact O-C 3.54Å; A11-G14 PolarHBondContact O-N 3.49Å; L12-G14 VanDerWaalsContact C-N 3.32Å; G14-V17 PolarHBondContact O-N 3Å; G14-A18 PolarHBondContact O-N 3.28Å
15L67.8Low75Confident74 Ų7492 Ų9239%0.38752%0.523SS..Hα-helixtrans-50.5-49.9176-108.879.9000114.3A11 V17 A18 Q19A11-L15 HydrophobicContact CB-CD1 4.46Å; A11-L15 WeakPolarHBondContact O-CD1 3.32Å; A11-L15 PolarHBondContact O-N 3.31Å; L15-V17 VanDerWaalsContact C-N 3.26Å; L15-V17 PolarHBondContact O-N 3.41Å; L15-A18 PolarHBondContact O-N 2.97Å; L15-Q19 WeakPolarHBondContact O-CB 3.03Å; L15-Q19 PolarHBondContact O-N 3.05Å
16P68.8Low75Confident74 Ų7488.1 Ų88.148%0.48151%0.505SS..Hα-helixtrans-66.1-30.9-176.724.3-33.9000112.2L12 A20L12-P16 WeakPolarHBondContact O-CD 3.35Å; P16-A20 WeakPolarHBondContact O-CB 3.41Å; P16-A20 PolarHBondContact O-N 2.89Å
17V68.8Low74.7Confident103 Ų10387.6 Ų87.662%0.62451%0.51SS*.Hα-helixtrans-71.7-43.4176.1174.20000110.6G14 L15 A20 L21G14-V17 PolarHBondContact O-N 3Å; L15-V17 VanDerWaalsContact C-N 3.26Å; L15-V17 PolarHBondContact O-N 3.41Å; V17-A20 PolarHBondContact O-N 3.44Å; V17-L21 WeakPolarHBondContact O-CB 3.4Å; V17-L21 PolarHBondContact O-N 3.43Å
18A70.6Confident74.4Confident56 Ų5692.2 Ų92.246%0.46352%0.517SS..Hα-helixtrans-64.3-43.417700000111.8G14 L15 L21 E22G14-A18 PolarHBondContact O-N 3.28Å; L15-A18 PolarHBondContact O-N 2.97Å; A18-L21 PolarHBondContact O-N 2.9Å; A18-E22 WeakPolarHBondContact O-CB 3.48Å; A18-E22 VanDerWaalsContact O-CG 3.28Å; A18-E22 WeakPolarHBondContact O-CG 3.3Å; A18-E22 PolarHBondContact O-N 3.24Å
19Q69.3Low74.5Confident111 Ų11191.8 Ų91.852%0.51952%0.521SS..Hα-helixtrans-66.4-41.2176.9-80.5156.3-4.500112.3L15 L21 E22 C23L15-Q19 WeakPolarHBondContact O-CB 3.03Å; L15-Q19 PolarHBondContact O-N 3.05Å; Q19-L21 VanDerWaalsContact C-N 3.3Å; Q19-L21 PolarHBondContact O-N 3.21Å; Q19-E22 PolarHBondContact O-N 3.46Å; Q19-C23 WeakPolarHBondContact O-CB 3.09Å; Q19-C23 PolarHBondContact O-N 2.9Å; Q19-C23 PolarHBondContact O-SG 3.31Å
20A67.3Low74.2Confident62 Ų6290.5 Ų90.551%0.51253%0.529SS..Hα-helixtrans-63.8-36.8174.800000112.3P16 V17 H24P16-A20 WeakPolarHBondContact O-CB 3.41Å; P16-A20 PolarHBondContact O-N 2.89Å; V17-A20 PolarHBondContact O-N 3.44Å; A20-H24 VanDerWaalsContact O-CB 3.3Å; A20-H24 WeakPolarHBondContact O-CB 3.44Å; A20-H24 PolarHBondContact O-N 2.95Å
21L65.1Low74.1Confident112 Ų11289.8 Ų89.859%0.58652%0.522SS*.Hα-helixtrans-70.5-43.6177.8-162.573.4000111.6V17 A18 Q19 H24 V25V17-L21 WeakPolarHBondContact O-CB 3.4Å; V17-L21 PolarHBondContact O-N 3.43Å; A18-L21 PolarHBondContact O-N 2.9Å; Q19-L21 VanDerWaalsContact C-N 3.3Å; Q19-L21 PolarHBondContact O-N 3.21Å; L21-H24 PolarHBondContact O-N 3.31Å; L21-V25 WeakPolarHBondContact O-CG2 3.45Å; L21-V25 PolarHBondContact O-N 2.94Å
22E71.7Confident73.2Confident138 Ų13895.3 Ų95.365%0.64555%0.545SS*.Hα-helixtrans-57.8-51.9173.2-75-78.393.900109.9A18 Q19 H24 V25 C26A18-E22 WeakPolarHBondContact O-CB 3.48Å; A18-E22 VanDerWaalsContact O-CG 3.28Å; A18-E22 WeakPolarHBondContact O-CG 3.3Å; A18-E22 PolarHBondContact O-N 3.24Å; Q19-E22 PolarHBondContact O-N 3.46Å; E22-H24 VanDerWaalsContact C-N 3.3Å; E22-H24 PolarHBondContact O-N 3.26Å; E22-V25 PolarHBondContact O-N 2.9Å; E22-C26 WeakPolarHBondContact O-CB 3.29Å; E22-C26 PolarHBondContact O-N 3.23Å
23C72.1Confident72.9Confident57 Ų5794 Ų9439%0.38554%0.542SS..Hα-helixtrans-61.6-35177.7-66.40000113Q19 A27Q19-C23 WeakPolarHBondContact O-CB 3.09Å; Q19-C23 PolarHBondContact O-N 2.9Å; Q19-C23 PolarHBondContact O-SG 3.31Å; C23-A27 WeakPolarHBondContact O-CB 2.91Å; C23-A27 PolarHBondContact O-N 2.95Å
24H75.9Confident72.1Confident131 Ų13199.7 Ų99.761%0.60656%0.563SS**Hα-helixtrans-67.5-48.2176.8-176.483.2000112A20 L21 E22 Y28A20-H24 VanDerWaalsContact O-CB 3.3Å; A20-H24 WeakPolarHBondContact O-CB 3.44Å; A20-H24 PolarHBondContact O-N 2.95Å; L21-H24 PolarHBondContact O-N 3.31Å; E22-H24 VanDerWaalsContact C-N 3.3Å; E22-H24 PolarHBondContact O-N 3.26Å; H24-Y28 VanDerWaalsContact O-CB 3.29Å; H24-Y28 WeakPolarHBondContact O-CB 3.28Å; H24-Y28 PolarHBondContact O-N 3.11Å
25V79.2Confident72Confident81 Ų81102.9 Ų102.949%0.49157%0.572SS.*Hα-helixtrans-65.1-44.8178.7171.80000110.5L21 E22 Y28 N29L21-V25 WeakPolarHBondContact O-CG2 3.45Å; L21-V25 PolarHBondContact O-N 2.94Å; E22-V25 PolarHBondContact O-N 2.9Å; V25-Y28 WeakPolarHBondContact O-CB 3.35Å; V25-Y28 PolarHBondContact O-N 3.5Å; V25-N29 WeakPolarHBondContact O-CB 3.36Å; V25-N29 PolarHBondContact O-N 2.85Å
26C78.7Confident72.2Confident32 Ų32104.4 Ų104.422%0.21658%0.582CS.*Hα-helixtrans-68.8-38.6-176.91750000110.9E22 N29 G30 D31 C33E22-C26 WeakPolarHBondContact O-CB 3.29Å; E22-C26 PolarHBondContact O-N 3.23Å; C26-N29 PolarHBondContact O-N 2.89Å; C26-G30 PolarHBondContact O-N 2.03Å; C26-G30 VanDerWaalsContact O-N 3.11Å; C26-D31 PolarHBondContact O-N 2.87Å; C26-C33 VanDerWaalsContact CA-SG 3.52Å; C26-C33 HydrophobicContact CB-CB 4.03Å; C26-C33 WeakPolarHBondContact CB-SG 2.77Å; C26-C33 WeakPolarHBondContact SG-CB 3.1Å; C26-C33 CovalentContact SG-SG 2.03Å; C26-C33 PolarHBondContact SG-SG 2.76Å
27A75.8Confident72.4Confident71 Ų71106.1 Ų106.159%0.58759%0.588SS**Hα-helixtrans-67.7-36.9169.800000113.2C23 N29 G30C23-A27 WeakPolarHBondContact O-CB 2.91Å; C23-A27 PolarHBondContact O-N 2.95Å; A27-N29 VanDerWaalsContact C-N 3.3Å; A27-N29 PolarHBondContact O-N 3.28Å; A27-G30 PolarHBondContact O-N 2.92Å
28Y75.1Confident72.6Confident200 Ų200106.3 Ų106.378%0.78459%0.586SS**Hα-helixtrans-65.6-35174.9-174.8-92.5000112H24 V25 G30H24-Y28 VanDerWaalsContact O-CB 3.29Å; H24-Y28 WeakPolarHBondContact O-CB 3.28Å; H24-Y28 PolarHBondContact O-N 3.11Å; V25-Y28 WeakPolarHBondContact O-CB 3.35Å; V25-Y28 PolarHBondContact O-N 3.5Å; Y28-G30 VanDerWaalsContact C-N 3.28Å
29N80.9Confident72.7Confident120 Ų120109.4 Ų109.464%0.64259%0.593SS**Hα-helixtrans-81.5-9.1178.4-151.551.9000113V25 C26 A27 D31V25-N29 WeakPolarHBondContact O-CB 3.36Å; V25-N29 PolarHBondContact O-N 2.85Å; C26-N29 PolarHBondContact O-N 2.89Å; A27-N29 VanDerWaalsContact C-N 3.3Å; A27-N29 PolarHBondContact O-N 3.28Å; N29-D31 VanDerWaalsContact C-N 3.35Å; N29-D31 PolarHBondContact ND2-OD2 3.25Å
30G76.4Confident72.9Confident63 Ų63109.3 Ų109.365%0.64960%0.598SS**THydrogen-bonded Turntrans77.519.2-17900000114C26 A27 Y28C26-G30 PolarHBondContact O-N 2.03Å; C26-G30 VanDerWaalsContact O-N 3.11Å; A27-G30 PolarHBondContact O-N 2.92Å; Y28-G30 VanDerWaalsContact C-N 3.28Å
31D80.1Confident73.3Confident89 Ų89112.7 Ų112.748%0.47660%0.604SS.*  trans-84.7151.6176.3-75.6-72.1000111.4C26 N29 C33C26-D31 PolarHBondContact O-N 2.87Å; N29-D31 VanDerWaalsContact C-N 3.35Å; N29-D31 PolarHBondContact ND2-OD2 3.25Å; D31-C33 PolarHBondContact O-N 3.35Å; D31-C33 PolarHBondContact O-SG 3.21Å
32N61.6Low74Confident161 Ų161112.8 Ų112.886%0.86161%0.606SS**  trans-80.999.9178.5-49-32.5000109.2
33C70.7Confident74.2Confident49 Ų49110.7 Ų110.733%0.33160%0.603SS.*  trans-90.2132.3179.7-33.50000109.8C26 D31C26-C33 VanDerWaalsContact CA-SG 3.52Å; C26-C33 HydrophobicContact CB-CB 4.03Å; C26-C33 WeakPolarHBondContact CB-SG 2.77Å; C26-C33 WeakPolarHBondContact SG-CB 3.1Å; C26-C33 CovalentContact SG-SG 2.03Å; C26-C33 PolarHBondContact SG-SG 2.76Å; D31-C33 PolarHBondContact O-N 3.35Å; D31-C33 PolarHBondContact O-SG 3.21Å
34F63.6Low74.4Confident274 Ų274115.5 Ų115.5100%1.20262%0.622SS**  trans-98.90-177.4-123.1-82.1000112

Retrieved 34 of 34 residues in 37.7 ms (Link to these results)