A0A087WPU9_MOUSE Loading...

La ribonucleoprotein 4B

AlphaFold DB , UniProt , Accession A0A087WPU9, Species MOUSE (Mus musculus, Mouse), Gene Larp4b, Length 36 aa.

						>A0A087WPU9_MOUSE|A0A087WPU9|Larp4b
MTSDQDAKVVAEPQAQRVQEGKDSSHLMNGPISQTT
					

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(Predicted Aligned Error values between residue pairs)

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Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	68.6	Low	74.2	Confident	243 Å²	243	134.9 Å²	134.9	100%	1.197	77%	0.766	S	S	*	*				0	102.8	0	-85.8	-174.7	-82.1	0	0	106.8
2	T	70.9	Confident	75.1	Confident	120 Å²	120	138.8 Å²	138.8	74%	0.736	77%	0.773	S	S	*	*			trans	-75.1	120.2	166.3	-177.5	0	0	0	0	105.8	D4	T2-D4 PolarHBondContact O-N 3.42Å
3	S	73	Confident	75.4	Confident	77 Å²	77	137.1 Å²	137.1	54%	0.538	77%	0.771	S	S	.	*			trans	-87.5	103.1	-179.6	-172.9	0	0	0	0	107.5	Q5	S3-Q5 PolarHBondContact O-N 3.2Å; S3-Q5 PolarHBondContact OG-OE1 3.15Å; S3-Q5 WeakPolarHBondContact OG-CB 3.45Å; S3-Q5 WeakPolarHBondContact OG-CG 3.49Å
4	D	74.7	Confident	75.8	Confident	139 Å²	139	140.6 Å²	140.6	74%	0.743	78%	0.779	S	S	*	*			trans	-75.3	33.9	176.1	-60.7	-58.8	0	0	0	112.1	T2	T2-D4 PolarHBondContact O-N 3.42Å
5	Q	71.6	Confident	76.1	Confident	168 Å²	168	136.5 Å²	136.5	79%	0.785	77%	0.77	S	S	*	*			trans	-96.6	4.1	-168.7	-71.1	-169.2	-71.1	0	0	115.8	S3 A7	S3-Q5 PolarHBondContact O-N 3.2Å; S3-Q5 PolarHBondContact OG-OE1 3.15Å; S3-Q5 WeakPolarHBondContact OG-CB 3.45Å; S3-Q5 WeakPolarHBondContact OG-CG 3.49Å; Q5-A7 PolarHBondContact O-N 2.95Å; Q5-A7 VanDerWaalsContact O-N 3.15Å
6	D	71.9	Confident	76.2	Confident	164 Å²	164	139.1 Å²	139.1	88%	0.877	77%	0.774	S	S	*	*			trans	-87	41.1	171.4	-79.2	-65.7	0	0	0	112.7	K8	D6-K8 VanDerWaalsContact C-N 3.26Å; D6-K8 PolarHBondContact O-N 3.15Å
7	A	73.8	Confident	76	Confident	83 Å²	83	144.6 Å²	144.6	69%	0.686	78%	0.78	S	S	*	*			trans	-74.5	84.1	167.1	0	0	0	0	0	109.1	Q5 V9	Q5-A7 PolarHBondContact O-N 2.95Å; Q5-A7 VanDerWaalsContact O-N 3.15Å; A7-V9 PolarHBondContact O-N 3.11Å; A7-V9 VanDerWaalsContact O-N 3.11Å
8	K	76.5	Confident	75.8	Confident	171 Å²	171	142.9 Å²	142.9	74%	0.743	78%	0.775	S	S	*	*			trans	-63.9	110.8	169.2	125.9	176.5	176	-67	0	108.4	D6 V10	D6-K8 VanDerWaalsContact C-N 3.26Å; D6-K8 PolarHBondContact O-N 3.15Å; K8-V10 PolarHBondContact O-N 2.93Å; K8-V10 VanDerWaalsContact O-N 3.15Å; K8-V10 HydrophobicContact CG-CG2 3.78Å; K8-V10 VanDerWaalsContact CE-CG2 3.46Å; K8-V10 HydrophobicContact CD-CG2 4.24Å
9	V	76.2	Confident	75.5	Confident	140 Å²	140	142.6 Å²	142.6	85%	0.848	77%	0.768	S	S	*	*			trans	-70.7	109.2	170	179.9	0	0	0	0	107.3	A7	A7-V9 PolarHBondContact O-N 3.11Å; A7-V9 VanDerWaalsContact O-N 3.11Å
10	V	79.8	Confident	75.2	Confident	96 Å²	96	144.5 Å²	144.5	58%	0.582	77%	0.772	S	S	*	*			trans	-85.7	113.5	169.8	-179.3	0	0	0	0	106.9	K8	K8-V10 PolarHBondContact O-N 2.93Å; K8-V10 VanDerWaalsContact O-N 3.15Å; K8-V10 HydrophobicContact CG-CG2 3.78Å; K8-V10 VanDerWaalsContact CE-CG2 3.46Å; K8-V10 HydrophobicContact CD-CG2 4.24Å
11	A	79.6	Confident	74.7	Confident	83 Å²	83	140.4 Å²	140.4	69%	0.686	76%	0.763	S	S	*	*	P	Polyproline II helix	trans	-66.1	136.8	166.9	0	0	0	0	0	108.9
12	E	85	Confident	74.4	Confident	182 Å²	182	135.2 Å²	135.2	85%	0.85	73%	0.734	S	S	*	*	P	Polyproline II helix	trans	-62.4	127.6	176.9	-146.3	175.6	145.6	0	0	109	Q14	E12-Q14 PolarHBondContact O-N 3.24Å
13	P	78.1	Confident	73.9	Confident	116 Å²	116	136 Å²	136	75%	0.753	73%	0.734	S	S	*	*	P	Polyproline II helix	trans	-63.6	127.3	-177.5	24.5	-32.2	0	0	0	109.5	A15	P13-A15 PolarHBondContact O-N 3.17Å
14	Q	82.1	Confident	73.1	Confident	187 Å²	187	136.3 Å²	136.3	87%	0.874	74%	0.736	S	S	*	*	P	Polyproline II helix	trans	-63	120.9	173.8	-66.9	-170.1	-29.6	0	0	108.9	E12 Q16	E12-Q14 PolarHBondContact O-N 3.24Å; Q14-Q16 PolarHBondContact O-N 3.15Å; Q14-Q16 VanDerWaalsContact O-N 3.12Å
15	A	80.4	Confident	72.3	Confident	78 Å²	78	133.1 Å²	133.1	65%	0.645	73%	0.725	S	S	*	*	P	Polyproline II helix	trans	-61.5	117	175.5	0	0	0	0	0	109.4	P13 R17	P13-A15 PolarHBondContact O-N 3.17Å; A15-R17 PolarHBondContact O-N 3.12Å; A15-R17 VanDerWaalsContact O-N 3.15Å
16	Q	76.8	Confident	71.6	Confident	179 Å²	179	132.2 Å²	132.2	84%	0.836	72%	0.72	S	S	*	*	P	Polyproline II helix	trans	-63.5	116.8	168.9	-75.1	-179.9	-12.2	0	0	108	Q14 V18	Q14-Q16 PolarHBondContact O-N 3.15Å; Q14-Q16 VanDerWaalsContact O-N 3.12Å; Q16-V18 VanDerWaalsContact C-N 3.33Å; Q16-V18 PolarHBondContact O-N 2.97Å
17	R	73.6	Confident	71.3	Confident	233 Å²	233	131.1 Å²	131.1	88%	0.879	71%	0.713	S	S	*	*			trans	-73.3	92.9	171.9	-61.4	-65.4	-178.6	177.1	-2.1	107.4	A15 Q19	A15-R17 PolarHBondContact O-N 3.12Å; A15-R17 VanDerWaalsContact O-N 3.15Å; R17-Q19 PolarHBondContact O-N 2.85Å
18	V	71.9	Confident	70.8	Confident	114 Å²	114	134.8 Å²	134.8	69%	0.691	72%	0.719	S	S	*	*			trans	-66.2	124.8	166.3	179.3	0	0	0	0	106.4	Q16 E20	Q16-V18 VanDerWaalsContact C-N 3.33Å; Q16-V18 PolarHBondContact O-N 2.97Å; V18-E20 PolarHBondContact O-N 3.36Å
19	Q	70.1	Confident	70.2	Confident	136 Å²	136	133.7 Å²	133.7	64%	0.636	72%	0.721	S	S	*	*			trans	-68.4	89	170.2	-167.7	103.7	87.4	0	0	106.6	R17 G21 K22	R17-Q19 PolarHBondContact O-N 2.85Å; Q19-G21 PolarHBondContact O-N 3.49Å; Q19-K22 HydrophobicContact CG-CD 4.4Å; Q19-K22 HydrophobicContact CG-CG 3.92Å; Q19-K22 VanDerWaalsContact OE1-CE 3.25Å
20	E	70.1	Confident	69.7	Low	181 Å²	181	129.3 Å²	129.3	85%	0.846	70%	0.704	S	S	*	*			trans	-57.3	110.2	170	-75.8	-178.9	83	0	0	106.9	V18 K22	V18-E20 PolarHBondContact O-N 3.36Å; E20-K22 PolarHBondContact O-N 2.97Å
21	G	64.8	Low	69	Low	58 Å²	58	130.4 Å²	130.4	60%	0.598	71%	0.713	S	S	*	*			trans	30.1	89.6	177.4	0	0	0	0	0	114	Q19 D23	Q19-G21 PolarHBondContact O-N 3.49Å; G21-D23 PolarHBondContact O-N 2.82Å
22	K	62.4	Low	68.3	Low	135 Å²	135	133.6 Å²	133.6	59%	0.587	72%	0.717	S	S	*	*			trans	-50.1	109.8	145.4	-93.2	171.1	179.3	172.6	0	104.3	Q19 E20 S24	Q19-K22 HydrophobicContact CG-CD 4.4Å; Q19-K22 HydrophobicContact CG-CG 3.92Å; Q19-K22 VanDerWaalsContact OE1-CE 3.25Å; E20-K22 PolarHBondContact O-N 2.97Å; K22-S24 PolarHBondContact O-N 2.97Å
23	D	59.2	Low	67.2	Low	135 Å²	135	129.8 Å²	129.8	72%	0.722	71%	0.711	S	S	*	*			trans	-38.5	120.2	171.5	-71.8	-84.1	0	0	0	106.5	G21 S25	G21-D23 PolarHBondContact O-N 2.82Å; D23-S25 PolarHBondContact O-N 3.36Å
24	S	57.4	Low	66.3	Low	85 Å²	85	132.3 Å²	132.3	59%	0.594	71%	0.712	S	S	*	*	G	3₁₀ helix	trans	-60.6	17	179	-53.2	0	0	0	0	112.6	K22 H26 L27	K22-S24 PolarHBondContact O-N 2.97Å; S24-H26 PolarHBondContact O-N 2.65Å; S24-L27 PolarHBondContact O-N 2.96Å; S24-L27 WeakPolarHBondContact O-CB 3.3Å; S24-L27 VanDerWaalsContact O-CB 3.3Å
25	S	56.6	Low	65.1	Low	72 Å²	72	129.6 Å²	129.6	50%	0.503	71%	0.708	S	S	.	*	G	3₁₀ helix	trans	-54.1	-31.5	166.8	-178.9	0	0	0	0	112.6	D23 L27 M28	D23-S25 PolarHBondContact O-N 3.36Å; S25-L27 PolarHBondContact O-N 3.08Å; S25-M28 PolarHBondContact O-N 3.29Å; S25-M28 VanDerWaalsContact O-N 3.08Å
26	H	58.2	Low	64	Low	149 Å²	149	135.6 Å²	135.6	69%	0.69	74%	0.737	S	S	*	*	G	3₁₀ helix	trans	-69.4	-15.3	172.1	-62.8	-51.2	0	0	0	113.8	S24 M28	S24-H26 PolarHBondContact O-N 2.65Å; H26-M28 VanDerWaalsContact C-N 3.28Å
27	L	64.1	Low	63.4	Low	140 Å²	140	133.4 Å²	133.4	73%	0.733	73%	0.732	S	S	*	*	G	3₁₀ helix	trans	-81.9	-7.4	172	-55.8	-178.5	0	0	0	112.5	S24 S25	S24-L27 PolarHBondContact O-N 2.96Å; S24-L27 WeakPolarHBondContact O-CB 3.3Å; S24-L27 VanDerWaalsContact O-CB 3.3Å; S25-L27 PolarHBondContact O-N 3.08Å
28	M	63	Low	62.8	Low	161 Å²	161	128.2 Å²	128.2	79%	0.793	73%	0.725	S	S	*	*	S	Bend	trans	-121.4	18	-174.1	-60.5	-61.4	178.1	0	0	113.9	S25 H26	S25-M28 PolarHBondContact O-N 3.29Å; S25-M28 VanDerWaalsContact O-N 3.08Å; H26-M28 VanDerWaalsContact C-N 3.28Å
29	N	64.9	Low	62.3	Low	147 Å²	147	128.9 Å²	128.9	79%	0.786	73%	0.727	S	S	*	*			trans	-127	62.9	-178.9	-135	-14	0	0	0	112.6
30	G	66.4	Low	61.9	Low	48 Å²	48	128.5 Å²	128.5	50%	0.495	73%	0.732	S	S	.	*	S	Bend	trans	-114.9	145.6	147.5	0	0	0	0	0	107.5	I32	G30-I32 PolarHBondContact O-N 3.03Å
31	P	64.2	Low	61.3	Low	119 Å²	119	125.3 Å²	125.3	77%	0.773	73%	0.725	S	S	*	*			trans	-54.8	120.9	177.8	23.5	-31.8	0	0	0	108.3	S33	P31-S33 PolarHBondContact O-N 2.73Å
32	I	64.4	Low	61.1	Low	150 Å²	150	129.7 Å²	129.7	77%	0.769	73%	0.733	S	S	*	*			trans	-65.9	98.2	165	-49	177.9	0	0	0	103.8	G30 Q34	G30-I32 PolarHBondContact O-N 3.03Å; I32-Q34 HydrophobicContact CG2-CG 3.71Å; I32-Q34 PolarHBondContact O-N 2.86Å
33	S	63.3	Low	61	Low	103 Å²	103	129.4 Å²	129.4	72%	0.72	74%	0.744	S	S	*	*			trans	-64.5	79.9	165.3	-69.9	0	0	0	0	107.2	P31 T35	P31-S33 PolarHBondContact O-N 2.73Å; S33-T35 VanDerWaalsContact C-N 3.27Å; S33-T35 PolarHBondContact O-N 3.15Å; S33-T35 VanDerWaalsContact O-N 3.15Å
34	Q	59.3	Low	61.2	Low	169 Å²	169	128.9 Å²	128.9	79%	0.79	75%	0.745	S	S	*	*			trans	-75.3	90.7	159	-71.2	-167.7	-71	0	0	106.3	I32	I32-Q34 HydrophobicContact CG2-CG 3.71Å; I32-Q34 PolarHBondContact O-N 2.86Å
35	T	56.8	Low	61.5	Low	129 Å²	129	132.6 Å²	132.6	79%	0.791	76%	0.758	S	S	*	*			trans	-79.4	116.8	159.5	-53	0	0	0	0	106.5	S33	S33-T35 VanDerWaalsContact C-N 3.27Å; S33-T35 PolarHBondContact O-N 3.15Å; S33-T35 VanDerWaalsContact O-N 3.15Å
36	T	56.4	Low	61.9	Low	204 Å²	204	138.1 Å²	138.1	100%	1.252	78%	0.781	S	S	*	*			trans	-61.1	0	166.6	-55.2	0	0	0	0	110.8

Retrieved 36 of 36 residues in 30.6 ms (Link to these results)

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