A0A087WQ18_MOUSE Loading...

5'-3' exoribonuclease 1

AlphaFold DB , UniProt , Accession A0A087WQ18, Species MOUSE (Mus musculus, Mouse), Gene Xrn1, Length 40 aa.

>A0A087WQ18_MOUSE|A0A087WQ18|Xrn1
MAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETL
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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M76.7Confident92.1Very high245 Ų245119.5 Ų119.5100%1.20770%0.7SS**  0128.30-169.4172.4-178.500107.4
2A88.1Confident92.6Very high99 Ų99117 Ų11782%0.81868%0.678SS**  trans-109.1141-179.800000109.8
3V89.6Confident93Very high135 Ų135115.5 Ų115.582%0.81867%0.666SS**  trans-105142.4177.6-176.60000108.6G5V3-G5 PolarHBondContact O-N 3.35Å
4D89.8Confident93.2Very high139 Ų139115.6 Ų115.674%0.74366%0.657SS**  trans-65120.6175.1-78.6-26.3000110.6
5G92.8Very high93.5Very high66 Ų66111.1 Ų111.168%0.6863%0.629SS**  trans-80.6-163.7170.800000113.2V3 A7V3-G5 PolarHBondContact O-N 3.35Å; G5-A7 PolarHBondContact O-N 3Å
6V93.5Very high93.7Very high146 Ų146115.9 Ų115.989%0.88563%0.634SS**PPolyproline II helixtrans-67.1130.5178.1-1770000110.3
7A94.6Very high93.9Very high17 Ų17111.2 Ų111.214%0.1462%0.618CS.*PPolyproline II helixtrans-99159.9-177.400000112.6G5 K11 M12G5-A7 PolarHBondContact O-N 3Å; A7-K11 HydrophobicContact CB-CB 4.1Å; A7-K11 HydrophobicContact CB-CD 3.99Å; A7-K11 HydrophobicContact CB-CG 4.11Å; A7-M12 HydrophobicContact CB-CG 4.28Å; A7-M12 WeakPolarHBondContact O-CG 3.29Å
8P97.6Very high94Very high98 Ų98111.2 Ų111.264%0.63661%0.607SS**PPolyproline II helixtrans-59151.5171.1-23.633.7000112.3A10 K11 M12P8-A10 PolarHBondContact O-N 3.4Å; P8-A10 VanDerWaalsContact O-N 3.11Å; P8-K11 WeakPolarHBondContact O-CA 3.38Å; P8-K11 PolarHBondContact O-N 2.98Å; P8-M12 PolarHBondContact O-N 3.33Å
9R96.7Very high94.2Very high202 Ų202115.2 Ų115.276%0.76261%0.612SS**Hα-helixtrans-55.9-35.6-172.5-165.3162.8177.896.9-5.7113.9M12 N13R9-M12 PolarHBondContact O-N 3.22Å; R9-N13 PolarHBondContact O-N 3.06Å
10A97.3Very high94.3Very high71 Ų71116.8 Ų116.859%0.58761%0.614SS**Hα-helixtrans-60.1-46.1174.300000112.3P8 N13 Q14P8-A10 PolarHBondContact O-N 3.4Å; P8-A10 VanDerWaalsContact O-N 3.11Å; A10-N13 PolarHBondContact O-N 2.9Å; A10-Q14 PolarHBondContact O-N 3.28Å
11K96.8Very high94.4Very high96 Ų96118.6 Ų118.642%0.41761%0.612SS.*Hα-helixtrans-70.3-34.8176.9-172173.1-179.4-174.30111.2A7 P8 N13 Q14 Q15A7-K11 HydrophobicContact CB-CB 4.1Å; A7-K11 HydrophobicContact CB-CD 3.99Å; A7-K11 HydrophobicContact CB-CG 4.11Å; P8-K11 WeakPolarHBondContact O-CA 3.38Å; P8-K11 PolarHBondContact O-N 2.98Å; K11-N13 VanDerWaalsContact C-N 3.35Å; K11-N13 PolarHBondContact O-N 3.07Å; K11-Q14 WeakPolarHBondContact O-CB 3.41Å; K11-Q14 PolarHBondContact O-N 3.32Å; K11-Q15 WeakPolarHBondContact O-CG 3.5Å; K11-Q15 PolarHBondContact O-N 3.11Å
12M97.5Very high95.3Very high90 Ų90110.4 Ų110.444%0.44358%0.579SS.*Hα-helixtrans-62.2-39.7172.4-67.6-17475.400112.3A7 P8 R9 Q14 Q15 R16A7-M12 HydrophobicContact CB-CG 4.28Å; A7-M12 WeakPolarHBondContact O-CG 3.29Å; P8-M12 PolarHBondContact O-N 3.33Å; R9-M12 PolarHBondContact O-N 3.22Å; M12-Q14 VanDerWaalsContact C-N 3.34Å; M12-Q14 PolarHBondContact O-N 3.46Å; M12-Q15 PolarHBondContact O-N 2.88Å; M12-R16 WeakPolarHBondContact O-CB 3.24Å; M12-R16 PolarHBondContact O-N 2.91Å
13N97.7Very high95.7Very high98 Ų98108.1 Ų108.152%0.52456%0.561SS.*Hα-helixtrans-63.6-40.8174.6-78.2-6.1000111.6R9 A10 K11 R16 G17R9-N13 PolarHBondContact O-N 3.06Å; A10-N13 PolarHBondContact O-N 2.9Å; K11-N13 VanDerWaalsContact C-N 3.35Å; K11-N13 PolarHBondContact O-N 3.07Å; N13-R16 PolarHBondContact O-N 3.45Å; N13-G17 PolarHBondContact O-N 3.41Å
14Q96.8Very high96Very high116 Ų116107.3 Ų107.354%0.54255%0.546SS..Hα-helixtrans-64.3-43.3173.6-66.2177.5900112.1A10 K11 M12 R16 G17 R18A10-Q14 PolarHBondContact O-N 3.28Å; K11-Q14 WeakPolarHBondContact O-CB 3.41Å; K11-Q14 PolarHBondContact O-N 3.32Å; M12-Q14 VanDerWaalsContact C-N 3.34Å; M12-Q14 PolarHBondContact O-N 3.46Å; Q14-R16 VanDerWaalsContact C-N 3.34Å; Q14-G17 PolarHBondContact O-N 3.21Å; Q14-R18 WeakPolarHBondContact O-CG 3.25Å; Q14-R18 PolarHBondContact O-N 2.96Å
15Q96.7Very high96.2Very high49 Ų49105.6 Ų105.623%0.22953%0.534CS..Hα-helixtrans-61.1-43.8174.7-74.31795.700111K11 M12 R18 R19K11-Q15 WeakPolarHBondContact O-CG 3.5Å; K11-Q15 PolarHBondContact O-N 3.11Å; M12-Q15 PolarHBondContact O-N 2.88Å; Q15-R18 PolarHBondContact O-N 3.44Å; Q15-R19 WeakPolarHBondContact O-CB 3.34Å; Q15-R19 VanDerWaalsContact O-CG 3.32Å; Q15-R19 WeakPolarHBondContact O-CG 3.35Å; Q15-R19 PolarHBondContact O-N 2.96Å
16R96.6Very high96.3Very high188 Ų188104.7 Ų104.771%0.70952%0.519SS*.Hα-helixtrans-60.4-47.2176.9-173.3-179.7-178.4-170.50.7111.3M12 N13 Q14 R18 R19 F20M12-R16 WeakPolarHBondContact O-CB 3.24Å; M12-R16 PolarHBondContact O-N 2.91Å; N13-R16 PolarHBondContact O-N 3.45Å; Q14-R16 VanDerWaalsContact C-N 3.34Å; R16-R18 VanDerWaalsContact C-N 3.33Å; R16-R18 PolarHBondContact O-N 2.91Å; R16-R19 PolarHBondContact O-N 3.33Å; R16-F20 WeakPolarHBondContact O-CB 3.35Å; R16-F20 PolarHBondContact O-N 3.25Å
17G97.1Very high96.3Very high35 Ų35102.9 Ų102.936%0.36150%0.501SS..Hα-helixtrans-63-37.717700000113N13 Q14 R21N13-G17 PolarHBondContact O-N 3.41Å; Q14-G17 PolarHBondContact O-N 3.21Å; G17-R21 PolarHBondContact O-N 2.95Å
18R96.9Very high96.2Very high112 Ų112105 Ų10542%0.42351%0.51SS..Hα-helixtrans-63.5-51.1171.9-77-167-70.6-93.22.7111.7Q14 Q15 R16 F20 R21 S22Q14-R18 WeakPolarHBondContact O-CG 3.25Å; Q14-R18 PolarHBondContact O-N 2.96Å; Q15-R18 PolarHBondContact O-N 3.44Å; R16-R18 VanDerWaalsContact C-N 3.33Å; R16-R18 PolarHBondContact O-N 2.91Å; R18-F20 VanDerWaalsContact C-N 3.28Å; R18-F20 PolarHBondContact O-N 3.28Å; R18-R21 PolarHBondContact O-N 3.41Å; R18-S22 PolarHBondContact O-N 3.42Å; R18-S22 PolarHBondContact O-OG 3.39Å
19R96.3Very high95.9Very high187 Ų187107 Ų10771%0.70651%0.509SS*.Hα-helixtrans-57.2-42.3179.2-73.6-179.3-179.3-169.71.4112Q15 R16 S22 A23Q15-R19 WeakPolarHBondContact O-CB 3.34Å; Q15-R19 VanDerWaalsContact O-CG 3.32Å; Q15-R19 WeakPolarHBondContact O-CG 3.35Å; Q15-R19 PolarHBondContact O-N 2.96Å; R16-R19 PolarHBondContact O-N 3.33Å; R19-S22 PolarHBondContact O-N 3Å; R19-A23 WeakPolarHBondContact O-CB 3.2Å; R19-A23 PolarHBondContact O-N 3.45Å
20F96.7Very high95.6Very high147 Ų147101 Ų10165%0.64549%0.491SS*.Hα-helixtrans-61.9-46.2177.5-176.7-100.8000112.4R16 R18 A23 K24R16-F20 WeakPolarHBondContact O-CB 3.35Å; R16-F20 PolarHBondContact O-N 3.25Å; R18-F20 VanDerWaalsContact C-N 3.28Å; R18-F20 PolarHBondContact O-N 3.28Å; F20-A23 PolarHBondContact O-N 3.03Å; F20-K24 PolarHBondContact O-N 3.32Å
21R96.4Very high95.2Very high154 Ų154102.9 Ų102.958%0.58149%0.486SS*.Hα-helixtrans-61.7-47.8176.6-75.3-172.3-71.6168.3-3.2112G17 R18 A23 K24 E25G17-R21 PolarHBondContact O-N 2.95Å; R18-R21 PolarHBondContact O-N 3.41Å; R21-A23 VanDerWaalsContact C-N 3.32Å; R21-A23 PolarHBondContact O-N 3.26Å; R21-K24 PolarHBondContact O-N 3.22Å; R21-E25 WeakPolarHBondContact O-CB 3.23Å; R21-E25 WeakPolarHBondContact O-CG 3.32Å; R21-E25 PolarHBondContact O-N 2.98Å
22S96.3Very high94.8Very high74 Ų74104.2 Ų104.252%0.51749%0.492SS..Hα-helixtrans-62.2-38.6179.4-58.10000112.8R18 R19 A26R18-S22 PolarHBondContact O-N 3.42Å; R18-S22 PolarHBondContact O-OG 3.39Å; R19-S22 PolarHBondContact O-N 3Å; S22-A26 WeakPolarHBondContact O-CB 3.37Å; S22-A26 PolarHBondContact O-N 2.87Å
23A95.9Very high94.3Very high51 Ų51100.6 Ų100.642%0.42148%0.476SS..Hα-helixtrans-64.1-47.5175.400000111.5R19 F20 R21 E25 A26 E27R19-A23 WeakPolarHBondContact O-CB 3.2Å; R19-A23 PolarHBondContact O-N 3.45Å; F20-A23 PolarHBondContact O-N 3.03Å; R21-A23 VanDerWaalsContact C-N 3.32Å; R21-A23 PolarHBondContact O-N 3.26Å; A23-E25 PolarHBondContact O-N 3.47Å; A23-A26 WeakPolarHBondContact O-CB 3.33Å; A23-A26 PolarHBondContact O-N 3.2Å; A23-E27 PolarHBondContact O-N 2.95Å
24K95.9Very high93.7Very high117 Ų117101.6 Ų101.651%0.50948%0.48SS..Hα-helixtrans-60.9-45.1177.1-172.6-179.4177.2-178.30111.9F20 R21 A26 E27 D28F20-K24 PolarHBondContact O-N 3.32Å; R21-K24 PolarHBondContact O-N 3.22Å; K24-A26 VanDerWaalsContact C-N 3.29Å; K24-A26 PolarHBondContact O-N 2.91Å; K24-E27 PolarHBondContact O-N 2.84Å; K24-D28 WeakPolarHBondContact O-CB 3.46Å; K24-D28 VanDerWaalsContact O-CG 3.31Å; K24-D28 PolarHBondContact O-N 2.91Å
25E94.7Very high93.1Very high104 Ų104103.8 Ų103.849%0.48649%0.491SS..Hα-helixtrans-62.3-37176.8-74.2172-163.300112.2R21 A23 K29R21-E25 WeakPolarHBondContact O-CB 3.23Å; R21-E25 WeakPolarHBondContact O-CG 3.32Å; R21-E25 PolarHBondContact O-N 2.98Å; A23-E25 PolarHBondContact O-N 3.47Å; E25-K29 WeakPolarHBondContact O-CB 3.38Å; E25-K29 WeakPolarHBondContact O-CG 3.38Å; E25-K29 PolarHBondContact O-N 3.17Å
26A93.8Very high92.5Very high46 Ų46108.8 Ų108.838%0.3851%0.511SS..Hα-helixtrans-66.6-46.5175.500000111.5S22 A23 K24 D28 K29 I30S22-A26 WeakPolarHBondContact O-CB 3.37Å; S22-A26 PolarHBondContact O-N 2.87Å; A23-A26 WeakPolarHBondContact O-CB 3.33Å; A23-A26 PolarHBondContact O-N 3.2Å; K24-A26 VanDerWaalsContact C-N 3.29Å; K24-A26 PolarHBondContact O-N 2.91Å; A26-D28 VanDerWaalsContact C-N 3.35Å; A26-D28 PolarHBondContact O-N 3.42Å; A26-K29 PolarHBondContact O-N 3.5Å; A26-I30 VanDerWaalsContact O-CG1 3.25Å; A26-I30 WeakPolarHBondContact O-CG1 3.48Å; A26-I30 PolarHBondContact O-N 3.26Å
27E93.4Very high91.5Very high109 Ų109103 Ų10351%0.50951%0.51SS..Hα-helixtrans-58.4-46.1174.8-73-179.4-167.100112A23 K24 K29 I30 K31A23-E27 PolarHBondContact O-N 2.95Å; K24-E27 PolarHBondContact O-N 2.84Å; E27-K29 VanDerWaalsContact C-N 3.31Å; E27-K29 PolarHBondContact O-N 3.3Å; E27-I30 PolarHBondContact O-N 2.86Å; E27-K31 WeakPolarHBondContact O-CG 3.44Å; E27-K31 PolarHBondContact O-N 3.45Å
28D93.3Very high90.3Very high61 Ų61107.5 Ų107.533%0.32652%0.522SS..Hα-helixtrans-65.4-36.1179.5-71.3-19.8000111.6K24 A26 K32K24-D28 WeakPolarHBondContact O-CB 3.46Å; K24-D28 VanDerWaalsContact O-CG 3.31Å; K24-D28 PolarHBondContact O-N 2.91Å; A26-D28 VanDerWaalsContact C-N 3.35Å; A26-D28 PolarHBondContact O-N 3.42Å; D28-K32 WeakPolarHBondContact O-CB 3.37Å; D28-K32 VanDerWaalsContact O-CG 3.23Å; D28-K32 WeakPolarHBondContact O-CG 3.5Å; D28-K32 PolarHBondContact O-N 3.36Å
29K91Very high88.6Confident139 Ų139108.9 Ų108.960%0.60454%0.543SS*.Hα-helixtrans-66-44173.8-79.1173.8-177.3179.80111.7E25 A26 E27 K32 A33E25-K29 WeakPolarHBondContact O-CB 3.38Å; E25-K29 WeakPolarHBondContact O-CG 3.38Å; E25-K29 PolarHBondContact O-N 3.17Å; A26-K29 PolarHBondContact O-N 3.5Å; E27-K29 VanDerWaalsContact C-N 3.31Å; E27-K29 PolarHBondContact O-N 3.3Å; K29-K32 PolarHBondContact O-N 2.78Å; K29-A33 WeakPolarHBondContact O-CB 3.49Å; K29-A33 PolarHBondContact O-N 3.4Å
30I90.1Very high86.9Confident77 Ų77108.6 Ų108.640%0.39555%0.554SS.*Hα-helixtrans-61.2-47.9177.3-68.9163.9000110A26 E27 K32 A33 I34 L40A26-I30 VanDerWaalsContact O-CG1 3.25Å; A26-I30 WeakPolarHBondContact O-CG1 3.48Å; A26-I30 PolarHBondContact O-N 3.26Å; E27-I30 PolarHBondContact O-N 2.86Å; I30-K32 VanDerWaalsContact C-N 3.34Å; I30-K32 PolarHBondContact O-N 3.28Å; I30-A33 PolarHBondContact O-N 3.33Å; I30-I34 HydrophobicContact CG2-CD1 3.77Å; I30-I34 VanDerWaalsContact O-CG1 3.29Å; I30-I34 WeakPolarHBondContact O-CG1 3.41Å; I30-I34 PolarHBondContact O-N 2.91Å; I30-L40 HydrophobicContact CB-CD1 4.16Å; I30-L40 HydrophobicContact CG1-CD1 3.81Å; I30-L40 HydrophobicContact CG2-CD1 3.9Å
31K89.6Confident86.4Confident111 Ų111106.7 Ų106.748%0.48355%0.55SS..Hα-helixtrans-57.3-47176.5-73172.2-174.8167.60111.7E27 A33 I34 E35E27-K31 WeakPolarHBondContact O-CG 3.44Å; E27-K31 PolarHBondContact O-N 3.45Å; K31-A33 PolarHBondContact O-N 2.92Å; K31-I34 PolarHBondContact O-N 2.94Å; K31-E35 WeakPolarHBondContact O-CG 3.45Å; K31-E35 PolarHBondContact O-N 3.49Å
32K88.7Confident85.9Confident124 Ų124104.2 Ų104.254%0.53955%0.548SS..Hα-helixtrans-65.1-35.9178.1-74.5174-177.6179.80113.2D28 K29 I30 K36D28-K32 WeakPolarHBondContact O-CB 3.37Å; D28-K32 VanDerWaalsContact O-CG 3.23Å; D28-K32 WeakPolarHBondContact O-CG 3.5Å; D28-K32 PolarHBondContact O-N 3.36Å; K29-K32 PolarHBondContact O-N 2.78Å; I30-K32 VanDerWaalsContact C-N 3.34Å; I30-K32 PolarHBondContact O-N 3.28Å; K32-K36 WeakPolarHBondContact O-CB 3.33Å; K32-K36 VanDerWaalsContact O-CG 3.24Å; K32-K36 WeakPolarHBondContact O-CG 3.47Å; K32-K36 PolarHBondContact O-N 2.95Å
33A86.2Confident85.3Confident13 Ų13105.8 Ų105.811%0.10755%0.55CS..Hα-helixtrans-66.4-44.2176.300000110.8K29 I30 K31 K36 G37 E38 L40K29-A33 WeakPolarHBondContact O-CB 3.49Å; K29-A33 PolarHBondContact O-N 3.4Å; I30-A33 PolarHBondContact O-N 3.33Å; K31-A33 PolarHBondContact O-N 2.92Å; A33-K36 CarbonylContact O-C 3.6Å; A33-K36 PolarHBondContact O-N 3.19Å; A33-G37 PolarHBondContact O-N 3.11Å; A33-G37 VanDerWaalsContact O-N 3.11Å; A33-E38 PolarHBondContact O-N 3.29Å; A33-L40 HydrophobicContact CB-CD2 4.31Å; A33-L40 HydrophobicContact CB-CG 4.11Å
34I85.1Confident84.7Confident119 Ų119109.1 Ų109.161%0.6156%0.557SS**Hα-helixtrans-61.1-46.6174.7-65.3165.4000111I30 K31 K36 G37I30-I34 HydrophobicContact CG2-CD1 3.77Å; I30-I34 VanDerWaalsContact O-CG1 3.29Å; I30-I34 WeakPolarHBondContact O-CG1 3.41Å; I30-I34 PolarHBondContact O-N 2.91Å; K31-I34 PolarHBondContact O-N 2.94Å; I34-K36 PolarHBondContact O-N 2.93Å; I34-G37 PolarHBondContact O-N 3.34Å
35E84.4Confident84Confident163 Ų163108.6 Ų108.676%0.76256%0.56SS**Hα-helixtrans-60.4-34.2177.4-77.3175.7177.600112.7K31 G37K31-E35 WeakPolarHBondContact O-CG 3.45Å; K31-E35 PolarHBondContact O-N 3.49Å; E35-G37 VanDerWaalsContact C-N 3.31Å
36K84.2Confident83.3Confident153 Ų153108.9 Ų108.967%0.66557%0.565SS**THydrogen-bonded Turntrans-83.4-4.6177.9-71.1176.8179.4-171.30113.7K32 A33 I34 E38K32-K36 WeakPolarHBondContact O-CB 3.33Å; K32-K36 VanDerWaalsContact O-CG 3.24Å; K32-K36 WeakPolarHBondContact O-CG 3.47Å; K32-K36 PolarHBondContact O-N 2.95Å; A33-K36 CarbonylContact O-C 3.6Å; A33-K36 PolarHBondContact O-N 3.19Å; I34-K36 PolarHBondContact O-N 2.93Å; K36-E38 HydrophobicContact CB-CG 4.45Å; K36-E38 PolarHBondContact O-N 3.3Å
37G76.6Confident82.5Confident66 Ų66113.4 Ų113.468%0.6858%0.579SS**THydrogen-bonded Turntrans70.615.7-176.600000114A33 I34 E35A33-G37 PolarHBondContact O-N 3.11Å; A33-G37 VanDerWaalsContact O-N 3.11Å; I34-G37 PolarHBondContact O-N 3.34Å; E35-G37 VanDerWaalsContact C-N 3.31Å
38E71.1Confident81.7Confident131 Ų131113.7 Ų113.761%0.61258%0.584SS**  trans-85.4116.6174.6-71.8177.2163.400108.5A33 K36 L40A33-E38 PolarHBondContact O-N 3.29Å; K36-E38 HydrophobicContact CB-CG 4.45Å; K36-E38 PolarHBondContact O-N 3.3Å; E38-L40 PolarHBondContact O-N 3.2Å
39T61.8Low80.7Confident141 Ų141118.1 Ų118.187%0.86561%0.605SS**  trans-67.7120.8167.640.90000108.9
40L60.3Low79.8Confident180 Ų180116.2 Ų116.294%0.94261%0.606SS**  trans-53.80174.6-82.1154.5000113.2I30 A33 E38I30-L40 HydrophobicContact CB-CD1 4.16Å; I30-L40 HydrophobicContact CG1-CD1 3.81Å; I30-L40 HydrophobicContact CG2-CD1 3.9Å; A33-L40 HydrophobicContact CB-CD2 4.31Å; A33-L40 HydrophobicContact CB-CG 4.11Å; E38-L40 PolarHBondContact O-N 3.2Å

Retrieved 40 of 40 residues in 46.9 ms (Link to these results)