A0A087WQ63_MOUSE Loading...

TAR DNA binding protein

AlphaFold DB , UniProt , Accession A0A087WQ63, Species MOUSE (Mus musculus, Mouse), Gene Tardbp, Length 19 aa.

						>A0A087WQ63_MOUSE|A0A087WQ63|Tardbp
FGGNPGGFGNQGKSPFGRS
					

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(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	F	66.6	Low	68.3	Low	270 Å²	270	119.6 Å²	119.6	100%	1.184	74%	0.738	S	S	*	*				0	44.3	0	-60.9	-82.5	0	0	0	112.6
2	G	74.9	Confident	68	Low	74 Å²	74	115.7 Å²	115.7	76%	0.763	74%	0.739	S	S	*	*			trans	-111	106.5	157.7	0	0	0	0	0	105.1
3	G	70.1	Confident	68.1	Low	68 Å²	68	119.4 Å²	119.4	70%	0.701	74%	0.737	S	S	*	*			trans	-61	152	-168.2	0	0	0	0	0	112.7	P5	G3-P5 WeakPolarHBondContact O-CD 3.38Å
4	N	73.6	Confident	68.4	Low	138 Å²	138	115.7 Å²	115.7	74%	0.738	72%	0.718	S	S	*	*			trans	-72.9	107	162.1	-93.7	19.1	0	0	0	107.9	G6	N4-G6 PolarHBondContact O-N 3.08Å
5	P	65.6	Low	68.6	Low	134 Å²	134	115.5 Å²	115.5	87%	0.87	72%	0.719	S	S	*	*	T	Hydrogen-bonded Turn	trans	-77.9	96.8	175.2	32.3	-26.4	0	0	0	107.4	G3	G3-P5 WeakPolarHBondContact O-CD 3.38Å
6	G	67.4	Low	69.1	Low	62 Å²	62	119 Å²	119	64%	0.639	72%	0.721	S	S	*	*	T	Hydrogen-bonded Turn	trans	90.5	21.6	171.3	0	0	0	0	0	116.4	N4 F8 G9	N4-G6 PolarHBondContact O-N 3.08Å; G6-F8 PolarHBondContact O-N 3.26Å; G6-G9 PolarHBondContact O-N 3.47Å; G6-G9 VanDerWaalsContact O-N 3.15Å
7	G	66.1	Low	69.1	Low	35 Å²	35	116.7 Å²	116.7	36%	0.361	73%	0.727	S	S	.	*	T	Hydrogen-bonded Turn	trans	-63.2	4.1	-177.1	0	0	0	0	0	117.8
8	F	67.1	Low	68.9	Low	189 Å²	189	122.9 Å²	122.9	83%	0.829	74%	0.735	S	S	*	*	T	Hydrogen-bonded Turn	trans	-146.8	47.6	167	-63.3	-72.7	0	0	0	111.4	G6 N10	G6-F8 PolarHBondContact O-N 3.26Å; F8-N10 PolarHBondContact O-N 3.24Å
9	G	67.3	Low	68.4	Low	61 Å²	61	126.5 Å²	126.5	63%	0.629	77%	0.766	S	S	*	*	S	Bend	trans	-80.5	93.8	167	0	0	0	0	0	110.6	G6 Q11	G6-G9 PolarHBondContact O-N 3.47Å; G6-G9 VanDerWaalsContact O-N 3.15Å; G9-Q11 PolarHBondContact O-N 3.15Å
10	N	66	Low	68.4	Low	113 Å²	113	126.5 Å²	126.5	60%	0.604	77%	0.766	S	S	*	*	S	Bend	trans	71.1	30.8	159.8	-146.5	8.9	0	0	0	117.6	F8 G12 K13	F8-N10 PolarHBondContact O-N 3.24Å; N10-G12 PolarHBondContact O-N 3Å; N10-K13 WeakPolarHBondContact OD1-CB 3.33Å; N10-K13 WeakPolarHBondContact OD1-CG 3.45Å
11	Q	66.6	Low	68.4	Low	172 Å²	172	126.5 Å²	126.5	80%	0.804	77%	0.766	S	S	*	*	T	Hydrogen-bonded Turn	trans	-77.3	77.8	163.5	-70.6	-177.9	-2.6	0	0	109.7	G9	G9-Q11 PolarHBondContact O-N 3.15Å
12	G	65.2	Low	68.5	Low	72 Å²	72	118.5 Å²	118.5	74%	0.742	74%	0.743	S	S	*	*	T	Hydrogen-bonded Turn	trans	157.8	12.1	173.7	0	0	0	0	0	116.7	N10	N10-G12 PolarHBondContact O-N 3Å
13	K	68.8	Low	68.1	Low	164 Å²	164	121.1 Å²	121.1	71%	0.713	74%	0.742	S	S	*	*			trans	-120.6	98.5	171.8	-57	-172.7	-173.5	-60.4	0	108.9	N10 P15	N10-K13 WeakPolarHBondContact OD1-CB 3.33Å; N10-K13 WeakPolarHBondContact OD1-CG 3.45Å; K13-P15 WeakPolarHBondContact O-CD 3.17Å
14	S	72.9	Confident	68	Low	68 Å²	68	124.4 Å²	124.4	48%	0.476	74%	0.744	S	S	.	*			trans	-62.8	123.5	160	-167.7	0	0	0	0	107.3	F16	S14-F16 WeakPolarHBondContact CB-O 3.45Å; S14-F16 PolarHBondContact O-N 2.61Å; S14-F16 PolarHBondContact OG-O 3.02Å
15	P	70.6	Confident	67.6	Low	113 Å²	113	123.5 Å²	123.5	73%	0.734	75%	0.745	S	S	*	*	S	Bend	trans	-67.3	-18.1	178.7	25.9	-32.4	0	0	0	112.3	K13	K13-P15 WeakPolarHBondContact O-CD 3.17Å
16	F	76.6	Confident	67.8	Low	171 Å²	171	122.8 Å²	122.8	75%	0.75	74%	0.736	S	S	*	*	S	Bend	trans	-130.1	112.9	170.7	-56.8	-79.4	0	0	0	106.8	S14 R18	S14-F16 WeakPolarHBondContact CB-O 3.45Å; S14-F16 PolarHBondContact O-N 2.61Å; S14-F16 PolarHBondContact OG-O 3.02Å; F16-R18 PolarHBondContact O-N 2.87Å; F16-R18 VanDerWaalsContact O-N 3.08Å
17	G	68.8	Low	67.8	Low	80 Å²	80	127.5 Å²	127.5	83%	0.825	74%	0.743	S	S	*	*			trans	-52.4	117.2	-179	0	0	0	0	0	110.9
18	R	66.3	Low	67.9	Low	228 Å²	228	135.2 Å²	135.2	86%	0.86	78%	0.775	S	S	*	*			trans	-98.8	108.6	167.5	-65.9	178.5	164.4	-179.7	-5.6	106	F16	F16-R18 PolarHBondContact O-N 2.87Å; F16-R18 VanDerWaalsContact O-N 3.08Å
19	S	59.1	Low	68	Low	191 Å²	191	130.3 Å²	130.3	100%	1.336	77%	0.77	S	S	*	*			trans	-62.7	0	152.1	54.3	0	0	0	0	110.1

Retrieved 19 of 19 residues in 5.4 ms (Link to these results)

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