A0A087WQG0_MOUSE Loading...

D-2-hydroxyglutarate dehydrogenase

AlphaFold DB , UniProt , Accession A0A087WQG0, Species MOUSE (Mus musculus, Mouse), Gene D2hgdh, Length 50 aa.

>A0A087WQG0_MOUSE|A0A087WQG0|D2hgdh
MVLPLVSRWSARVLWASPGWRRTYTQRACVGLKRLGCPRGVYSPLAHRAY
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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M37.3Very low53.2Low241 Ų241133.4 Ų133.4100%1.18770%0.702SS**  0101.10-85.3169.7145.900108.2L3M1-L3 PolarHBondContact O-N 3.49Å
2V43.1Very low53.8Low141 Ų141134.3 Ų134.386%0.85569%0.689SS**  trans-88.7104.91761750000106.8P4V2-P4 WeakPolarHBondContact O-CD 3.33Å
3L55.1Low54.2Low158 Ų158130.9 Ų130.983%0.82768%0.678SS**  trans-71.4113.3165.5-78.7151.5000106M1 L5M1-L3 PolarHBondContact O-N 3.49Å; L3-L5 PolarHBondContact O-N 3.07Å
4P56.9Low54.7Low102 Ų102127.1 Ų127.166%0.66266%0.659SS**  trans-62.1121.1178.525.1-30.3000107V2 V6V2-P4 WeakPolarHBondContact O-CD 3.33Å; P4-V6 PolarHBondContact O-N 2.73Å
5L56.9Low54.9Low168 Ų168132.6 Ų132.688%0.8867%0.667SS**  trans-57.490.7168.9-125.985.5000106.1L3 S7L3-L5 PolarHBondContact O-N 3.07Å; L5-S7 VanDerWaalsContact C-N 3.27Å; L5-S7 PolarHBondContact O-N 3.12Å
6V57.3Low55.2Low100 Ų100129.3 Ų129.361%0.60667%0.667SS**  trans-64.4100.7172.2177.30000104.5P4 R8P4-V6 PolarHBondContact O-N 2.73Å; V6-R8 PolarHBondContact O-N 2.82Å; V6-R8 VanDerWaalsContact O-N 3.12Å
7S57Low55.7Low70 Ų70124.1 Ų124.149%0.4964%0.644SS.*  trans-43.4123.7-179.7-65.10000108.3L5 W9 S10 A11L5-S7 VanDerWaalsContact C-N 3.27Å; L5-S7 PolarHBondContact O-N 3.12Å; S7-W9 CarbonylContact O-C 3.52Å; S7-W9 PolarHBondContact O-N 3.48Å; S7-S10 WeakPolarHBondContact O-CB 3.45Å; S7-S10 PolarHBondContact O-N 3.41Å; S7-A11 PolarHBondContact O-N 3.14Å
8R56.7Low55.9Low193 Ų193123.3 Ų123.373%0.72865%0.648SS**Hα-helixtrans-48.8-23-178.3-162176.7-166.3-174.45.6113V6 R12V6-R8 PolarHBondContact O-N 2.82Å; V6-R8 VanDerWaalsContact O-N 3.12Å; R8-R12 PolarHBondContact O-N 2.81Å
9W51.7Low56.4Low194 Ų194119.2 Ų119.274%0.73564%0.639SS**Hα-helixtrans-66.5-46.6170.8-75.590000114.4S7 A11 R12 V13S7-W9 CarbonylContact O-C 3.52Å; S7-W9 PolarHBondContact O-N 3.48Å; W9-A11 VanDerWaalsContact C-N 3.3Å; W9-A11 PolarHBondContact O-N 2.95Å; W9-R12 PolarHBondContact O-N 2.75Å; W9-R12 VanDerWaalsContact O-N 3.14Å; W9-V13 WeakPolarHBondContact O-CG2 3.37Å; W9-V13 PolarHBondContact O-N 3.29Å
10S55.4Low56.5Low61 Ų61120.2 Ų120.243%0.42763%0.633SS.*Hα-helixtrans-62.4-38.6176.9-56.60000111.6S7 V13 L14S7-S10 WeakPolarHBondContact O-CB 3.45Å; S7-S10 PolarHBondContact O-N 3.41Å; S10-V13 PolarHBondContact O-N 2.93Å; S10-L14 WeakPolarHBondContact O-CB 3.48Å; S10-L14 VanDerWaalsContact O-CG 3.26Å; S10-L14 WeakPolarHBondContact O-CG 3.11Å; S10-L14 PolarHBondContact O-N 2.98Å
11A57.9Low56.6Low39 Ų39123.6 Ų123.632%0.32264%0.637SS.*Hα-helixtrans-62.9-41.9173.800000111.9S7 W9 L14 W15S7-A11 PolarHBondContact O-N 3.14Å; W9-A11 VanDerWaalsContact C-N 3.3Å; W9-A11 PolarHBondContact O-N 2.95Å; A11-L14 PolarHBondContact O-N 3.32Å; A11-W15 WeakPolarHBondContact O-CB 3.47Å; A11-W15 PolarHBondContact O-N 2.75Å
12R60Low57.7Low145 Ų145120.9 Ų120.955%0.54761%0.614SS.*Hα-helixtrans-65.4-39.9175.1-77.4-174.9-148.3174.95.1112.8R8 W9 L14 W15 A16R8-R12 PolarHBondContact O-N 2.81Å; W9-R12 PolarHBondContact O-N 2.75Å; W9-R12 VanDerWaalsContact O-N 3.14Å; R12-L14 VanDerWaalsContact C-N 3.35Å; R12-W15 PolarHBondContact O-N 2.98Å; R12-A16 WeakPolarHBondContact O-CB 3.26Å; R12-A16 PolarHBondContact O-N 3.43Å
13V59.4Low58.6Low90 Ų90117.4 Ų117.455%0.54559%0.593SS.*Hα-helixtrans-65.9-39.6177.7173.50000111W9 S10 A16 S17W9-V13 WeakPolarHBondContact O-CG2 3.37Å; W9-V13 PolarHBondContact O-N 3.29Å; S10-V13 PolarHBondContact O-N 2.93Å; V13-A16 PolarHBondContact O-N 3.35Å; V13-S17 PolarHBondContact O-N 2.81Å; V13-S17 PolarHBondContact O-OG 3.38Å
14L60.4Low58.8Low78 Ų78117.7 Ų117.741%0.40858%0.584SS.*Hα-helixtrans-64.8-41.5174.3-71169.4000111.6S10 A11 R12 S17 W20S10-L14 WeakPolarHBondContact O-CB 3.48Å; S10-L14 VanDerWaalsContact O-CG 3.26Å; S10-L14 WeakPolarHBondContact O-CG 3.11Å; S10-L14 PolarHBondContact O-N 2.98Å; A11-L14 PolarHBondContact O-N 3.32Å; R12-L14 VanDerWaalsContact C-N 3.35Å; L14-S17 WeakPolarHBondContact O-CB 3.19Å; L14-S17 PolarHBondContact O-N 3.38Å; L14-W20 WeakPolarHBondContact O-CB 3.25Å; L14-W20 VanDerWaalsContact O-CG 3.28Å
15W57.9Low58.9Low209 Ų209116.2 Ų116.279%0.79257%0.574SS**Hα-helixtrans-69.8-32.7176-82.357.2000113.4A11 R12 S17A11-W15 WeakPolarHBondContact O-CB 3.47Å; A11-W15 PolarHBondContact O-N 2.75Å; R12-W15 PolarHBondContact O-N 2.98Å; W15-S17 VanDerWaalsContact C-N 3.31Å
16A59.5Low59.1Low79 Ų79113.7 Ų113.765%0.65356%0.557SS**Hα-helixtrans-79.2-14.4177.200000113R12 V13 P18R12-A16 WeakPolarHBondContact O-CB 3.26Å; R12-A16 PolarHBondContact O-N 3.43Å; V13-A16 PolarHBondContact O-N 3.35Å; A16-P18 WeakPolarHBondContact O-CD 3.46Å
17S64.8Low59.2Low41 Ų41118.3 Ų118.329%0.28756%0.564SS.*  trans-68.4122.1179.1-69.70000110.4V13 L14 W15 G19 W20 R21V13-S17 PolarHBondContact O-N 2.81Å; V13-S17 PolarHBondContact O-OG 3.38Å; L14-S17 WeakPolarHBondContact O-CB 3.19Å; L14-S17 PolarHBondContact O-N 3.38Å; W15-S17 VanDerWaalsContact C-N 3.31Å; S17-G19 PolarHBondContact O-N 2.83Å; S17-G19 VanDerWaalsContact O-N 3.08Å; S17-W20 PolarHBondContact O-N 3.38Å; S17-R21 PolarHBondContact O-N 3.26Å
18P59.1Low59.2Low111 Ų111116.8 Ų116.872%0.72156%0.555SS**Hα-helixtrans-56.3-30.9-179.6-24.932.9000113A16 R21 R22A16-P18 WeakPolarHBondContact O-CD 3.46Å; P18-R21 PolarHBondContact O-N 3.01Å; P18-R22 PolarHBondContact O-N 3.03Å
19G64.6Low59.2Low45 Ų45110.8 Ų110.846%0.46454%0.542SS..Hα-helixtrans-61.8-43.9175.800000113.1S17 R22 T23S17-G19 PolarHBondContact O-N 2.83Å; S17-G19 VanDerWaalsContact O-N 3.08Å; G19-R22 PolarHBondContact O-N 3.47Å; G19-T23 PolarHBondContact O-N 3.36Å; G19-T23 PolarHBondContact O-OG1 3.04Å
20W59.1Low59.5Low138 Ų138106.1 Ų106.152%0.52354%0.535SS..Hα-helixtrans-65.5-41.9178.4-107.887.7000111.9L14 S17 R22 T23 Y24L14-W20 WeakPolarHBondContact O-CB 3.25Å; L14-W20 VanDerWaalsContact O-CG 3.28Å; S17-W20 PolarHBondContact O-N 3.38Å; W20-R22 VanDerWaalsContact C-N 3.31Å; W20-R22 PolarHBondContact O-N 3.45Å; W20-T23 PolarHBondContact O-N 2.98Å; W20-Y24 VanDerWaalsContact O-CB 3.25Å; W20-Y24 WeakPolarHBondContact O-CB 3.39Å; W20-Y24 PolarHBondContact O-N 2.88Å
21R58.8Low59.6Low193 Ų193104.6 Ų104.673%0.72853%0.529SS*.Hα-helixtrans-62.1-40.5175.4-161.3175.7-174.7-157.11.6111.1S17 P18 T25S17-R21 PolarHBondContact O-N 3.26Å; P18-R21 PolarHBondContact O-N 3.01Å; R21-T25 VanDerWaalsContact O-CB 3.28Å; R21-T25 WeakPolarHBondContact O-CB 3.37Å; R21-T25 PolarHBondContact O-N 3.14Å; R21-T25 PolarHBondContact O-OG1 3.08Å
22R60.7Low59.5Low183 Ų183108.3 Ų108.369%0.69154%0.543SS*.Hα-helixtrans-66.5-44.2177.9-157.6170.8-169.2167.51.7111.9P18 G19 W20 Q26P18-R22 PolarHBondContact O-N 3.03Å; G19-R22 PolarHBondContact O-N 3.47Å; W20-R22 VanDerWaalsContact C-N 3.31Å; W20-R22 PolarHBondContact O-N 3.45Å; R22-Q26 VanDerWaalsContact O-CB 3.3Å; R22-Q26 WeakPolarHBondContact O-CB 3.46Å; R22-Q26 VanDerWaalsContact O-CG 3.25Å; R22-Q26 WeakPolarHBondContact O-CG 3.39Å; R22-Q26 PolarHBondContact O-N 3.38Å
23T61.9Low59.2Low69 Ų69109 Ų10942%0.42355%0.55SS..Hα-helixtrans-68.4-39.9177.6-50.70000112.2G19 W20 R27G19-T23 PolarHBondContact O-N 3.36Å; G19-T23 PolarHBondContact O-OG1 3.04Å; W20-T23 PolarHBondContact O-N 2.98Å; T23-R27 WeakPolarHBondContact O-CB 3.21Å; T23-R27 WeakPolarHBondContact O-CG 3.41Å; T23-R27 PolarHBondContact O-N 2.86Å
24Y59.7Low59Low163 Ų163113.3 Ų113.364%0.63956%0.556SS**Hα-helixtrans-67.3-46.7177-172.6-94.7000111.3W20 Q26 R27 A28W20-Y24 VanDerWaalsContact O-CB 3.25Å; W20-Y24 WeakPolarHBondContact O-CB 3.39Å; W20-Y24 PolarHBondContact O-N 2.88Å; Y24-Q26 VanDerWaalsContact C-N 3.35Å; Y24-Q26 PolarHBondContact O-N 3.41Å; Y24-R27 PolarHBondContact O-N 3.4Å; Y24-A28 WeakPolarHBondContact O-CB 3.3Å; Y24-A28 PolarHBondContact O-N 2.8Å
25T59Low58.9Low71 Ų71116.8 Ų116.844%0.43657%0.574SS.*Hα-helixtrans-62.6-41.6175.5-56.80000111.2R21 A28 C29R21-T25 VanDerWaalsContact O-CB 3.28Å; R21-T25 WeakPolarHBondContact O-CB 3.37Å; R21-T25 PolarHBondContact O-N 3.14Å; R21-T25 PolarHBondContact O-OG1 3.08Å; T25-A28 PolarHBondContact O-N 3.43Å; T25-C29 VanDerWaalsContact O-CB 3.25Å; T25-C29 WeakPolarHBondContact O-CB 3.49Å; T25-C29 PolarHBondContact O-N 3.46Å; T25-C29 PolarHBondContact O-SG 2.81Å
26Q59.9Low58.6Low116 Ų116109.7 Ų109.754%0.54257%0.566SS.*Hα-helixtrans-62.7-46.2175.2-79.1178.5-17.800112.2R22 Y24 C29 V30R22-Q26 VanDerWaalsContact O-CB 3.3Å; R22-Q26 WeakPolarHBondContact O-CB 3.46Å; R22-Q26 VanDerWaalsContact O-CG 3.25Å; R22-Q26 WeakPolarHBondContact O-CG 3.39Å; R22-Q26 PolarHBondContact O-N 3.38Å; Y24-Q26 VanDerWaalsContact C-N 3.35Å; Y24-Q26 PolarHBondContact O-N 3.41Å; Q26-C29 PolarHBondContact O-N 2.9Å; Q26-V30 WeakPolarHBondContact O-CB 3.45Å; Q26-V30 WeakPolarHBondContact O-CG2 3.45Å; Q26-V30 PolarHBondContact O-N 3.31Å
27R58.7Low58Low197 Ų197109.7 Ų109.774%0.74356%0.56SS**Hα-helixtrans-66.1-39.1177.3-78.7-175.4177.6-170.70.4112.3T23 Y24 V30 G31T23-R27 WeakPolarHBondContact O-CB 3.21Å; T23-R27 WeakPolarHBondContact O-CG 3.41Å; T23-R27 PolarHBondContact O-N 2.86Å; Y24-R27 PolarHBondContact O-N 3.4Å; R27-V30 PolarHBondContact O-N 2.81Å; R27-G31 PolarHBondContact O-N 3.18Å
28A58.3Low57.3Low37 Ų37112.9 Ų112.931%0.30658%0.58SS.*Hα-helixtrans-66-42.6175.700000111.1Y24 T25 G31 L32Y24-A28 WeakPolarHBondContact O-CB 3.3Å; Y24-A28 PolarHBondContact O-N 2.8Å; T25-A28 PolarHBondContact O-N 3.43Å; A28-G31 PolarHBondContact O-N 2.89Å; A28-L32 VanDerWaalsContact O-CB 3.26Å; A28-L32 WeakPolarHBondContact O-CB 3.33Å; A28-L32 WeakPolarHBondContact O-CG 3.37Å; A28-L32 PolarHBondContact O-N 2.78Å
29C56.8Low56.9Low68 Ų68118.4 Ų118.446%0.45959%0.587SS.*Hα-helixtrans-66.7-36.9174.6-710000112.5T25 Q26 K33T25-C29 VanDerWaalsContact O-CB 3.25Å; T25-C29 WeakPolarHBondContact O-CB 3.49Å; T25-C29 PolarHBondContact O-N 3.46Å; T25-C29 PolarHBondContact O-SG 2.81Å; Q26-C29 PolarHBondContact O-N 2.9Å; C29-K33 WeakPolarHBondContact O-CB 3.16Å; C29-K33 PolarHBondContact O-N 3.37Å
30V58.6Low56.2Low96 Ų96119 Ų11958%0.58259%0.593SS**Hα-helixtrans-68.6-42.7174.1170.60000110.7Q26 R27 K33 R34Q26-V30 WeakPolarHBondContact O-CB 3.45Å; Q26-V30 WeakPolarHBondContact O-CG2 3.45Å; Q26-V30 PolarHBondContact O-N 3.31Å; R27-V30 PolarHBondContact O-N 2.81Å; V30-K33 PolarHBondContact O-N 2.91Å; V30-R34 WeakPolarHBondContact O-CB 3.25Å; V30-R34 PolarHBondContact O-N 2.97Å
31G56.9Low55.8Low28 Ų28118.3 Ų118.329%0.28960%0.604SS.*Hα-helixtrans-61.9-44174.500000112.3R27 A28 R34 L35R27-G31 PolarHBondContact O-N 3.18Å; A28-G31 PolarHBondContact O-N 2.89Å; G31-R34 CarbonylContact O-C 3.55Å; G31-R34 WeakPolarHBondContact O-CA 3.26Å; G31-R34 WeakPolarHBondContact O-CB 3.19Å; G31-R34 PolarHBondContact O-N 2.85Å; G31-R34 VanDerWaalsContact O-N 3.14Å; G31-L35 WeakPolarHBondContact O-CB 3.25Å; G31-L35 WeakPolarHBondContact O-CD1 3.28Å; G31-L35 PolarHBondContact O-N 3.24Å
32L56Low55.3Low118 Ų118120.5 Ų120.562%0.61861%0.614SS**Hα-helixtrans-68.7-39.2175.7-78.5164.3000112.5A28 R34 L35 G36A28-L32 VanDerWaalsContact O-CB 3.26Å; A28-L32 WeakPolarHBondContact O-CB 3.33Å; A28-L32 WeakPolarHBondContact O-CG 3.37Å; A28-L32 PolarHBondContact O-N 2.78Å; L32-R34 PolarHBondContact O-N 3.42Å; L32-L35 PolarHBondContact O-N 2.8Å; L32-G36 PolarHBondContact O-N 2.82Å
33K54Low54.5Low159 Ų159114.9 Ų114.969%0.69160%0.602SS**Hα-helixtrans-59.2-37168.3-97.2-175.3171.6-171.80111.2C29 V30 C37C29-K33 WeakPolarHBondContact O-CB 3.16Å; C29-K33 PolarHBondContact O-N 3.37Å; V30-K33 PolarHBondContact O-N 2.91Å; K33-C37 WeakPolarHBondContact O-CB 3.32Å; K33-C37 PolarHBondContact O-N 2.91Å; K33-C37 PolarHBondContact O-SG 3.41Å; K33-C37 VanDerWaalsContact O-SG 3.41Å
34R54.9Low54Low181 Ų181117.3 Ų117.368%0.68362%0.62SS**Hα-helixtrans-73.5-29.7178.3-146.7178-164.7-173.34113.2V30 G31 L32V30-R34 WeakPolarHBondContact O-CB 3.25Å; V30-R34 PolarHBondContact O-N 2.97Å; G31-R34 CarbonylContact O-C 3.55Å; G31-R34 WeakPolarHBondContact O-CA 3.26Å; G31-R34 WeakPolarHBondContact O-CB 3.19Å; G31-R34 PolarHBondContact O-N 2.85Å; G31-R34 VanDerWaalsContact O-N 3.14Å; L32-R34 PolarHBondContact O-N 3.42Å
35L57.7Low53.6Low150 Ų150116.6 Ų116.679%0.78563%0.626SS**Hα-helixtrans-85.8-28.1178-82.3151.6000112.8G31 L32G31-L35 WeakPolarHBondContact O-CB 3.25Å; G31-L35 WeakPolarHBondContact O-CD1 3.28Å; G31-L35 PolarHBondContact O-N 3.24Å; L32-L35 PolarHBondContact O-N 2.8Å
36G51.8Low52.9Low61 Ų61117.1 Ų117.163%0.62964%0.637SS**Hα-helixtrans-97.6-13.3179.200000115L32 P38L32-G36 PolarHBondContact O-N 2.82Å; G36-P38 WeakPolarHBondContact O-CD 3.35Å
37C47.4Very low52.3Low78 Ų78120.2 Ų120.253%0.52765%0.651SS.*SBendtrans-99107.3169.5-68.20000109.2K33 R39K33-C37 WeakPolarHBondContact O-CB 3.32Å; K33-C37 PolarHBondContact O-N 2.91Å; K33-C37 PolarHBondContact O-SG 3.41Å; K33-C37 VanDerWaalsContact O-SG 3.41Å; C37-R39 PolarHBondContact O-N 2.74Å
38P49Very low51.6Low109 Ų109122.2 Ų122.271%0.70866%0.659SS**  trans-56.2120.1157.525.4-30.6000106.2G36 G40G36-P38 WeakPolarHBondContact O-CD 3.35Å; P38-G40 PolarHBondContact O-N 3.04Å
39R51.1Low51.1Low226 Ų226124 Ų12485%0.85367%0.674SS**THydrogen-bonded Turntrans-71.148.9178.4-156.3174.9-172.8-174.1-3.3109.8C37C37-R39 PolarHBondContact O-N 2.74Å
40G50.9Low50.4Low58 Ų58135.2 Ų135.260%0.59871%0.708SS**THydrogen-bonded Turntrans-124.33.9-168.900000114.6P38P38-G40 PolarHBondContact O-N 3.04Å
41V50.2Low50Low123 Ų123137.2 Ų137.275%0.74572%0.715SS**SBendtrans-123.817.3-179.3-159.70000113
42Y47.6Very low49.6Very low239 Ų239142.9 Ų142.994%0.93774%0.737SS**  trans-113.857.3161.8-94.1-90.7000109
43S44.7Very low49.3Very low65 Ų65144.3 Ų144.346%0.45574%0.744SS.*  trans-102.1113.7162.6-1490000106.3L45 A46S43-L45 PolarHBondContact O-N 3.44Å; S43-A46 PolarHBondContact O-N 3.23Å
44P51.1Low49Very low121 Ų121143.5 Ų143.579%0.78675%0.747SS**G310 helixtrans-57.5-9179-22.532.6000114.1A46P44-A46 VanDerWaalsContact C-N 3.29Å; P44-A46 PolarHBondContact O-N 2.88Å
45L50.2Low48.6Very low148 Ų148141.1 Ų141.178%0.77575%0.751SS**G310 helixtrans-73.1-13.8178.7-68.8166.9000114.2S43S43-L45 PolarHBondContact O-N 3.44Å
46A44.5Very low48Very low81 Ų81140.5 Ų140.567%0.66975%0.749SS**G310 helixtrans-83.9-10.4-17900000114.6S43 P44S43-A46 PolarHBondContact O-N 3.23Å; P44-A46 VanDerWaalsContact C-N 3.29Å; P44-A46 PolarHBondContact O-N 2.88Å
47H46.9Very low47.8Very low182 Ų182146.2 Ų146.284%0.84376%0.757SS**G310 helixtrans-90.75.7179.5-160.6-72.7000113.1
48R45.9Very low47.8Very low239 Ų239151.5 Ų151.590%0.90278%0.775SS**G310 helixtrans-115.522.6-178.2-142.6-179.2-171.6179.72.3114.4
49A46.2Very low47.7Very low74 Ų74155 Ų15561%0.61278%0.781SS**  trans-146.283.8167.500000108
50Y43Very low47.4Very low304 Ų304148.5 Ų148.5100%1.19277%0.774SS**  trans165.30138.4-100.5-79.9000109.6

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