A0A087WQV7_MOUSE Loading...

DEAD box helicase 3, Y-linked

AlphaFold DB , UniProt , Accession A0A087WQV7, Species MOUSE (Mus musculus, Mouse), Gene Ddx3y, Length 41 aa.

						>A0A087WQV7_MOUSE|A0A087WQV7|Ddx3y
MSQVAAESTAGLDQQFVGLDLKSSDNQNGGGNTESILHFVF
					

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(Predicted Aligned Error values between residue pairs)

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Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	44	Very low	58.2	Low	247 Å²	247	126.3 Å²	126.3	100%	1.217	79%	0.791	S	S	*	*				0	103	0	-79.9	177	-97.1	0	107
2	S	53	Low	58.6	Low	118 Å²	118	125 Å²	125	83%	0.825	77%	0.774	S	S	*	*			trans	-83.1	122.2	-177.5	-171.1	0	0	0	108.8	V4	S2-V4 PolarHBondContact O-N 2.94Å
3	Q	56.2	Low	59.1	Low	184 Å²	184	127.6 Å²	127.6	86%	0.86	78%	0.78	S	S	*	*			trans	-77.6	103.3	175.8	-175	172	-4.1	0	107.9	A5	Q3-A5 PolarHBondContact O-N 3.21Å
4	V	59.5	Low	59.7	Low	128 Å²	128	127.5 Å²	127.5	78%	0.776	77%	0.766	S	S	*	*			trans	-67	113	165.9	178.1	0	0	0	106.2	S2 A6	S2-V4 PolarHBondContact O-N 2.94Å; V4-A6 PolarHBondContact O-N 2.88Å
5	A	61.5	Low	60.5	Low	79 Å²	79	130.1 Å²	130.1	65%	0.653	77%	0.767	S	S	*	*			trans	-62.7	107	169.6	0	0	0	0	107.2	Q3 E7	Q3-A5 PolarHBondContact O-N 3.21Å; A5-E7 PolarHBondContact O-N 2.92Å
6	A	61.8	Low	60.9	Low	94 Å²	94	133.5 Å²	133.5	78%	0.777	77%	0.769	S	S	*	*			trans	-70.2	88.7	166.7	0	0	0	0	106.9	V4 S8	V4-A6 PolarHBondContact O-N 2.88Å; A6-S8 PolarHBondContact O-N 3.02Å
7	E	60.1	Low	61.3	Low	178 Å²	178	133.3 Å²	133.3	83%	0.832	77%	0.77	S	S	*	*			trans	-63	94.5	161.9	-74.1	179.3	134	0	106.7	A5 T9	A5-E7 PolarHBondContact O-N 2.92Å; E7-T9 PolarHBondContact O-N 3.18Å
8	S	57.8	Low	61.6	Low	100 Å²	100	129.5 Å²	129.5	70%	0.699	77%	0.765	S	S	*	*			trans	-68.5	85.9	173.7	-175.5	0	0	0	108.2	A6 A10	A6-S8 PolarHBondContact O-N 3.02Å; S8-A10 PolarHBondContact O-N 3.23Å; S8-A10 WeakPolarHBondContact OG-CB 3.21Å
9	T	61.2	Low	62.1	Low	106 Å²	106	130.2 Å²	130.2	65%	0.65	76%	0.764	S	S	*	*			trans	-74.1	44.6	161	-54.4	0	0	0	109.2	E7 G11 L12	E7-T9 PolarHBondContact O-N 3.18Å; T9-G11 PolarHBondContact O-N 3.2Å; T9-L12 HydrophobicContact CG2-CB 4.38Å; T9-L12 HydrophobicContact CG2-CD1 3.57Å; T9-L12 HydrophobicContact CG2-CG 3.85Å
10	A	63.8	Low	62.5	Low	90 Å²	90	129.5 Å²	129.5	74%	0.744	76%	0.757	S	S	*	*	T	Hydrogen-bonded Turn	trans	-90.8	55	177.7	0	0	0	0	110.1	S8	S8-A10 PolarHBondContact O-N 3.23Å; S8-A10 WeakPolarHBondContact OG-CB 3.21Å
11	G	60.8	Low	62.8	Low	65 Å²	65	129.9 Å²	129.9	67%	0.67	76%	0.755	S	S	*	*	T	Hydrogen-bonded Turn	trans	-166.4	4.1	-179.2	0	0	0	0	116.1	T9 D13	T9-G11 PolarHBondContact O-N 3.2Å; G11-D13 PolarHBondContact O-N 2.88Å
12	L	63.3	Low	64.1	Low	111 Å²	111	126.1 Å²	126.1	58%	0.581	73%	0.732	S	S	*	*			trans	-89.9	61.4	172.4	-63.9	-178.7	0	0	110.1	T9 Q14	T9-L12 HydrophobicContact CG2-CB 4.38Å; T9-L12 HydrophobicContact CG2-CD1 3.57Å; T9-L12 HydrophobicContact CG2-CG 3.85Å; L12-Q14 HydrophobicContact CB-CG 4.2Å; L12-Q14 HydrophobicContact CD2-CG 4.1Å; L12-Q14 PolarHBondContact O-N 2.76Å
13	D	65.7	Low	64.7	Low	159 Å²	159	125.9 Å²	125.9	85%	0.85	73%	0.73	S	S	*	*			trans	-71.6	66.2	152.8	-83.7	-17.3	0	0	107.5	G11 Q15	G11-D13 PolarHBondContact O-N 2.88Å; D13-Q15 PolarHBondContact O-N 2.95Å
14	Q	66.9	Low	65.3	Low	126 Å²	126	122 Å²	122	59%	0.589	72%	0.724	S	S	*	*			trans	-77.4	79.9	170.4	-70.9	-174.9	-25.2	0	107	L12 F16	L12-Q14 HydrophobicContact CB-CG 4.2Å; L12-Q14 HydrophobicContact CD2-CG 4.1Å; L12-Q14 PolarHBondContact O-N 2.76Å; Q14-F16 PolarHBondContact O-N 2.96Å
15	Q	71.8	Confident	65.5	Low	167 Å²	167	121.6 Å²	121.6	78%	0.78	72%	0.717	S	S	*	*			trans	-63.8	103.2	165.5	-61.5	-165.8	-53.2	0	106.6	D13 V17	D13-Q15 PolarHBondContact O-N 2.95Å; Q15-V17 PolarHBondContact O-N 2.87Å
16	F	67.3	Low	65.6	Low	184 Å²	184	124.1 Å²	124.1	81%	0.807	72%	0.719	S	S	*	*			trans	-64.6	82.6	166.5	-77.9	-91.1	0	0	107.3	Q14 G18	Q14-F16 PolarHBondContact O-N 2.96Å; F16-G18 PolarHBondContact O-N 2.82Å
17	V	67.6	Low	65.7	Low	130 Å²	130	127 Å²	127	79%	0.788	72%	0.717	S	S	*	*			trans	-61.2	112.1	166.8	-179.4	0	0	0	104.9	Q15 L19	Q15-V17 PolarHBondContact O-N 2.87Å; V17-L19 PolarHBondContact O-N 3.03Å
18	G	66.6	Low	65.9	Low	65 Å²	65	125.3 Å²	125.3	67%	0.67	71%	0.713	S	S	*	*			trans	-34.9	120.7	-163.3	0	0	0	0	112.8	F16 D20	F16-G18 PolarHBondContact O-N 2.82Å; G18-D20 VanDerWaalsContact C-N 3.27Å; G18-D20 PolarHBondContact O-N 3.23Å
19	L	70.8	Confident	65.8	Low	142 Å²	142	123.7 Å²	123.7	74%	0.743	71%	0.713	S	S	*	*			trans	-61.7	96.8	169.5	-178.9	65.1	0	0	106.8	V17 L21	V17-L19 PolarHBondContact O-N 3.03Å; L19-L21 PolarHBondContact O-N 2.81Å; L19-L21 HydrophobicContact CG-CG 4.02Å; L19-L21 HydrophobicContact CD2-CG 4.1Å; L19-L21 HydrophobicContact CD2-CD2 3.74Å; L19-L21 HydrophobicContact CG-CD2 3.87Å
20	D	70.3	Confident	65.6	Low	116 Å²	116	122.3 Å²	122.3	62%	0.62	72%	0.72	S	S	*	*			trans	-69.2	88	172.2	-175.1	30.6	0	0	106.9	G18 K22	G18-D20 VanDerWaalsContact C-N 3.27Å; G18-D20 PolarHBondContact O-N 3.23Å; D20-K22 PolarHBondContact O-N 2.84Å; D20-K22 WeakPolarHBondContact OD2-CE 3.13Å; D20-K22 WeakPolarHBondContact OD2-CG 3.45Å
21	L	69	Low	65.4	Low	138 Å²	138	121.2 Å²	121.2	72%	0.723	72%	0.717	S	S	*	*			trans	-69.7	76.4	165.5	-65.2	174.4	0	0	106.3	L19 S23	L19-L21 PolarHBondContact O-N 2.81Å; L19-L21 HydrophobicContact CG-CG 4.02Å; L19-L21 HydrophobicContact CD2-CG 4.1Å; L19-L21 HydrophobicContact CD2-CD2 3.74Å; L19-L21 HydrophobicContact CG-CD2 3.87Å; L21-S23 VanDerWaalsContact C-N 3.32Å; L21-S23 PolarHBondContact O-N 2.82Å
22	K	71.4	Confident	65.2	Low	169 Å²	169	124.2 Å²	124.2	74%	0.735	72%	0.717	S	S	*	*			trans	-45.6	108.2	160.3	-70.3	-98.7	178.6	175.5	104.6	D20 S24	D20-K22 PolarHBondContact O-N 2.84Å; D20-K22 WeakPolarHBondContact OD2-CE 3.13Å; D20-K22 WeakPolarHBondContact OD2-CG 3.45Å; K22-S24 PolarHBondContact O-N 2.86Å
23	S	65.6	Low	64.9	Low	113 Å²	113	125.3 Å²	125.3	79%	0.79	73%	0.729	S	S	*	*			trans	-46.3	113.8	174.9	173.1	0	0	0	105.5	L21 D25	L21-S23 VanDerWaalsContact C-N 3.32Å; L21-S23 PolarHBondContact O-N 2.82Å; S23-D25 VanDerWaalsContact C-N 3.34Å; S23-D25 PolarHBondContact O-N 2.87Å
24	S	68.8	Low	64.6	Low	103 Å²	103	125.5 Å²	125.5	72%	0.72	73%	0.725	S	S	*	*			trans	-56.5	110.8	173.2	-179	0	0	0	103.9	K22 N26	K22-S24 PolarHBondContact O-N 2.86Å; S24-N26 PolarHBondContact O-N 2.9Å
25	D	64.2	Low	64.5	Low	118 Å²	118	123.8 Å²	123.8	63%	0.631	73%	0.727	S	S	*	*			trans	-59.6	94.2	169.6	-168.4	21.7	0	0	104.3	S23 Q27	S23-D25 VanDerWaalsContact C-N 3.34Å; S23-D25 PolarHBondContact O-N 2.87Å; D25-Q27 HydrophobicContact CB-CG 4.44Å; D25-Q27 PolarHBondContact O-N 2.7Å; D25-Q27 PolarHBondContact OD2-NE2 2.71Å
26	N	63.6	Low	63.8	Low	132 Å²	132	122.7 Å²	122.7	71%	0.706	73%	0.725	S	S	*	*			trans	-70.8	88.5	177.1	-177.3	26.2	0	0	103.3	S24 N28	S24-N26 PolarHBondContact O-N 2.9Å; N26-N28 PolarHBondContact O-N 2.78Å
27	Q	64.2	Low	63.3	Low	155 Å²	155	120.2 Å²	120.2	72%	0.724	72%	0.719	S	S	*	*			trans	-69.5	54.3	174.5	-60.4	-126.1	-49.2	0	109	D25 G29	D25-Q27 HydrophobicContact CB-CG 4.44Å; D25-Q27 PolarHBondContact O-N 2.7Å; D25-Q27 PolarHBondContact OD2-NE2 2.71Å; Q27-G29 PolarHBondContact O-N 2.95Å
28	N	62.9	Low	63	Low	142 Å²	142	122.2 Å²	122.2	76%	0.759	72%	0.72	S	S	*	*			trans	-74.4	54.8	152.5	-170	42.8	0	0	108.4	N26	N26-N28 PolarHBondContact O-N 2.78Å
29	G	56.8	Low	62.7	Low	67 Å²	67	126.2 Å²	126.2	69%	0.691	72%	0.719	S	S	*	*			trans	-121.4	43.8	170.2	0	0	0	0	108	Q27 G31	Q27-G29 PolarHBondContact O-N 2.95Å; G29-G31 PolarHBondContact O-N 2.94Å; G29-G31 VanDerWaalsContact O-N 3.14Å
30	G	56.8	Low	62.1	Low	77 Å²	77	124.8 Å²	124.8	79%	0.794	72%	0.716	S	S	*	*			trans	-60.8	113	171.6	0	0	0	0	109.4
31	G	59.4	Low	61.5	Low	66 Å²	66	131.4 Å²	131.4	68%	0.68	74%	0.74	S	S	*	*			trans	87.2	88.3	158.3	0	0	0	0	115.7	G29	G29-G31 PolarHBondContact O-N 2.94Å; G29-G31 VanDerWaalsContact O-N 3.14Å
32	N	55.9	Low	61.1	Low	128 Å²	128	131.1 Å²	131.1	68%	0.684	74%	0.74	S	S	*	*				-156.8	107.9	101.2	-121.9	5.9	0	0	109.3	E34	N32-E34 HydrophobicContact CB-CG 4.21Å; N32-E34 PolarHBondContact ND2-OE1 2.83Å; N32-E34 PolarHBondContact O-N 3.34Å
33	T	57.3	Low	60.6	Low	134 Å²	134	129.1 Å²	129.1	82%	0.822	74%	0.741	S	S	*	*			trans	-69.2	72.8	166.4	-39	0	0	0	108	S35	T33-S35 PolarHBondContact O-N 3.14Å
34	E	60.2	Low	60.3	Low	163 Å²	163	130 Å²	130	76%	0.762	74%	0.738	S	S	*	*			trans	-94.4	55.5	165.5	-65.3	-167.7	-141	0	108.4	N32	N32-E34 HydrophobicContact CB-CG 4.21Å; N32-E34 PolarHBondContact ND2-OE1 2.83Å; N32-E34 PolarHBondContact O-N 3.34Å
35	S	63.9	Low	59.8	Low	90 Å²	90	131.6 Å²	131.6	63%	0.629	74%	0.739	S	S	*	*			trans	-100.3	136.3	158.6	-161.2	0	0	0	106	T33	T33-S35 PolarHBondContact O-N 3.14Å
36	I	56.8	Low	59.5	Low	145 Å²	145	132.4 Å²	132.4	74%	0.744	75%	0.746	S	S	*	*			trans	80.4	99.4	-171.4	-38	164.5	0	0	109.3
37	L	58.2	Low	59.2	Low	131 Å²	131	132.5 Å²	132.5	69%	0.686	75%	0.748	S	S	*	*				-157.9	88.5	70.1	-71.1	161.7	0	0	110.2	F39	L37-F39 HydrophobicContact CB-CD2 3.98Å; L37-F39 HydrophobicContact CD2-CD2 3.38Å; L37-F39 HydrophobicContact CD2-CE2 3.23Å; L37-F39 HydrophobicContact CG-CD2 4.21Å; L37-F39 HydrophobicContact CG-CE2 4.47Å; L37-F39 PolarHBondContact O-N 2.78Å
38	H	59.8	Low	58.9	Low	172 Å²	172	130.9 Å²	130.9	80%	0.796	75%	0.75	S	S	*	*			trans	-68.2	82.8	153.9	173.4	-103.8	0	0	107.7
39	F	60.8	Low	58.6	Low	150 Å²	150	130 Å²	130	66%	0.658	75%	0.749	S	S	*	*			trans	-112.2	94	165	-82.9	-62.7	0	0	108.6	L37 F41	L37-F39 HydrophobicContact CB-CD2 3.98Å; L37-F39 HydrophobicContact CD2-CD2 3.38Å; L37-F39 HydrophobicContact CD2-CE2 3.23Å; L37-F39 HydrophobicContact CG-CD2 4.21Å; L37-F39 HydrophobicContact CG-CE2 4.47Å; L37-F39 PolarHBondContact O-N 2.78Å; F39-F41 HydrophobicContact CD1-CE2 4.09Å
40	V	59.2	Low	58.7	Low	111 Å²	111	135.3 Å²	135.3	67%	0.673	75%	0.754	S	S	*	*			trans	-80.9	115.6	162	178	0	0	0	107
41	F	56.5	Low	58.9	Low	256 Å²	256	140.5 Å²	140.5	100%	1.123	75%	0.751	S	S	*	*			trans	-128.6	0	155.1	-74.3	-69.5	0	0	108	F39	F39-F41 HydrophobicContact CD1-CE2 4.09Å

Retrieved 41 of 41 residues in 74.7 ms (Link to these results)

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