A0A087WQZ4_MOUSE Loading...

Ganglioside-induced differentiation-associated-protein 1

AlphaFold DB , UniProt , Accession A0A087WQZ4, Species MOUSE (Mus musculus, Mouse), Gene Gdap1, Length 60 aa.

						>A0A087WQZ4_MOUSE|A0A087WQZ4|Gdap1
MARRQDEARAGVPLRVEGPPDKEVHLILYHWTHSFSSQKVRLVIAEKALKCEEHDKEHPG
					

Structure Viewer

Loading PAE data...

(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	34.2	Very low	49.8	Very low	242 Å²	242	160.8 Å²	160.8	100%	1.192	84%	0.838	S	S	*	*				0	99.7	0	-66.9	-96.1	-98.5	0	0	107.4
2	A	40	Very low	50.4	Low	102 Å²	102	154.6 Å²	154.6	84%	0.843	81%	0.812	S	S	*	*			trans	-71.4	137.9	-170.6	0	0	0	0	0	111.8	R4	A2-R4 PolarHBondContact O-N 3.34Å
3	R	46.9	Very low	50.9	Low	235 Å²	235	149 Å²	149	89%	0.887	79%	0.79	S	S	*	*			trans	-63.5	127.4	-176.5	-75.5	178.9	139	168.6	-5.7	110.9	Q5	R3-Q5 PolarHBondContact O-N 3.28Å; R3-Q5 VanDerWaalsContact O-N 3.13Å
4	R	57.4	Low	51.7	Low	245 Å²	245	146.4 Å²	146.4	93%	0.925	78%	0.776	S	S	*	*			trans	-73.3	95.4	170.9	-62.9	-179.1	-178.1	-174.8	0.6	108.7	A2 D6	A2-R4 PolarHBondContact O-N 3.34Å; R4-D6 VanDerWaalsContact C-N 3.3Å; R4-D6 PolarHBondContact O-N 2.95Å
5	Q	54.3	Low	52.3	Low	186 Å²	186	150.9 Å²	150.9	87%	0.869	78%	0.778	S	S	*	*			trans	-85.5	81.1	161.6	-73.5	-179.1	6.2	0	0	107.4	R3	R3-Q5 PolarHBondContact O-N 3.28Å; R3-Q5 VanDerWaalsContact O-N 3.13Å
6	D	52.2	Low	52.9	Low	118 Å²	118	146.9 Å²	146.9	63%	0.631	76%	0.762	S	S	*	*			trans	-104.1	75.9	167.8	-139.5	-80.3	0	0	0	106.3	R4 K39	R4-D6 VanDerWaalsContact C-N 3.3Å; R4-D6 PolarHBondContact O-N 2.95Å; D6-K39 IonicContact OD1-NZ 3.13Å; D6-K39 IonicContact OD2-NZ 3.27Å; D6-K39 PolarHBondContact OD2-NZ 3.02Å; D6-K39 VanDerWaalsContact OD2-NZ 3.14Å
7	E	45.7	Very low	53.5	Low	181 Å²	181	149.4 Å²	149.4	85%	0.846	77%	0.77	S	S	*	*			trans	-108.5	84.5	165.8	-162.5	170.9	103	0	0	107.2	R9	E7-R9 VanDerWaalsContact C-N 3.31Å; E7-R9 PolarHBondContact O-N 3.19Å
8	A	57.9	Low	54.1	Low	83 Å²	83	143.9 Å²	143.9	69%	0.686	76%	0.756	S	S	*	*			trans	-66.6	91.9	170.3	0	0	0	0	0	108.6	A10	A8-A10 PolarHBondContact O-N 3.15Å
9	R	51.4	Low	54.9	Low	205 Å²	205	140.3 Å²	140.3	77%	0.774	74%	0.741	S	S	*	*			trans	-72.8	73.8	165.7	-166.9	173.8	172.5	-135.2	-0.2	108.8	E7 G11	E7-R9 VanDerWaalsContact C-N 3.31Å; E7-R9 PolarHBondContact O-N 3.19Å; R9-G11 PolarHBondContact O-N 3.35Å
10	A	53.4	Low	55.2	Low	99 Å²	99	140.1 Å²	140.1	82%	0.818	75%	0.749	S	S	*	*	T	Hydrogen-bonded Turn	trans	-60.2	121.3	168.3	0	0	0	0	0	108.6	A8	A8-A10 PolarHBondContact O-N 3.15Å
11	G	54.3	Low	55.7	Low	73 Å²	73	141 Å²	141	75%	0.753	75%	0.754	S	S	*	*	T	Hydrogen-bonded Turn	trans	128.1	2	161.3	0	0	0	0	0	118.3	R9 P13	R9-G11 PolarHBondContact O-N 3.35Å; G11-P13 WeakPolarHBondContact O-CD 3.4Å
12	V	57.1	Low	57.3	Low	86 Å²	86	136.9 Å²	136.9	52%	0.521	73%	0.729	S	S	.	*			trans	-90.7	115.6	168.8	-175.1	0	0	0	0	108.7	L14	V12-L14 PolarHBondContact O-N 2.76Å
13	P	56.8	Low	58.9	Low	82 Å²	82	138.3 Å²	138.3	53%	0.532	72%	0.718	S	S	.	*			trans	-57.9	132.5	169.1	23.2	-29.7	0	0	0	108.1	G11 R15	G11-P13 WeakPolarHBondContact O-CD 3.4Å; P13-R15 VanDerWaalsContact C-N 3.29Å; P13-R15 PolarHBondContact O-N 3.31Å
14	L	62.8	Low	60.3	Low	113 Å²	113	131.2 Å²	131.2	59%	0.592	70%	0.701	S	S	*	*			trans	-58.6	94	176.4	-168.1	78.6	0	0	0	107.9	V12 V16 L49	V12-L14 PolarHBondContact O-N 2.76Å; L14-V16 PolarHBondContact O-N 3.34Å; L14-L49 HydrophobicContact CD2-CD1 3.86Å
15	R	60.4	Low	61.7	Low	214 Å²	214	126.7 Å²	126.7	81%	0.808	69%	0.69	S	S	*	*			trans	-77.2	114.2	175.7	-84.5	-174.8	170.8	-157.5	-2.3	106.8	P13 E17	P13-R15 VanDerWaalsContact C-N 3.29Å; P13-R15 PolarHBondContact O-N 3.31Å; R15-E17 PolarHBondContact O-N 3.42Å
16	V	61.3	Low	63.4	Low	86 Å²	86	120.6 Å²	120.6	52%	0.521	66%	0.663	S	S	.	*			trans	-77.4	106.5	163.1	-177.2	0	0	0	0	106.8	L14 G18 V24	L14-V16 PolarHBondContact O-N 3.34Å; V16-G18 PolarHBondContact O-N 2.95Å; V16-V24 HydrophobicContact CB-CG2 4.27Å; V16-V24 HydrophobicContact CG1-CB 4.34Å; V16-V24 HydrophobicContact CG1-CG1 4.14Å; V16-V24 HydrophobicContact CG1-CG2 3.37Å; V16-V24 HydrophobicContact CG2-CG1 4.45Å; V16-V24 HydrophobicContact CG2-CG2 4.4Å
17	E	63.8	Low	65.4	Low	190 Å²	190	119 Å²	119	89%	0.888	65%	0.654	S	S	*	*			trans	-75.3	110.4	166.8	-81.2	179.6	78.1	0	0	108.4	R15	R15-E17 PolarHBondContact O-N 3.42Å
18	G	64.1	Low	67.6	Low	50 Å²	50	111.5 Å²	111.5	52%	0.515	62%	0.619	S	S	.	*	S	Bend	trans	-177	159.7	-179.9	0	0	0	0	0	110.6	V16	V16-G18 PolarHBondContact O-N 2.95Å
19	P	69.3	Low	69.3	Low	75 Å²	75	114.1 Å²	114.1	49%	0.487	61%	0.612	S	S	.	*			trans	-56.6	137.6	173.5	24.6	-33.1	0	0	0	109.6	D21 K22	P19-D21 PolarHBondContact O-N 3.3Å; P19-K22 HydrophobicContact CG-CB 4.31Å; P19-K22 HydrophobicContact CG-CD 3.62Å; P19-K22 HydrophobicContact CG-CG 3.81Å; P19-K22 PolarHBondContact O-N 2.85Å
20	P	60.8	Low	71.2	Confident	137 Å²	137	105 Å²	105	89%	0.89	58%	0.579	S	S	*	*	T	Hydrogen-bonded Turn	trans	-63.1	-12.1	-169.7	25.2	-35.3	0	0	0	114.4
21	D	64.7	Low	73	Confident	159 Å²	159	106.2 Å²	106.2	85%	0.85	56%	0.562	S	S	*	*	T	Hydrogen-bonded Turn	trans	-100.3	0.5	-175.3	-119.6	-102.1	0	0	0	114.2	P19	P19-D21 PolarHBondContact O-N 3.3Å
22	K	69.3	Low	74.5	Confident	155 Å²	155	105.2 Å²	105.2	67%	0.674	54%	0.541	S	S	*	.	S	Bend	trans	-96.2	117	177.6	-72.1	-170.9	-175.4	-175.1	0	110.5	P19 V24	P19-K22 HydrophobicContact CG-CB 4.31Å; P19-K22 HydrophobicContact CG-CD 3.62Å; P19-K22 HydrophobicContact CG-CG 3.81Å; P19-K22 PolarHBondContact O-N 2.85Å; K22-V24 PolarHBondContact O-N 2.9Å; K22-V24 VanDerWaalsContact O-N 3.15Å
23	E	72.1	Confident	75.9	Confident	133 Å²	133	108 Å²	108	62%	0.621	55%	0.549	S	S	*	.			trans	-61.6	114.2	168.7	-170.8	172.8	-162.1	0	0	109.5	H25 K50	E23-H25 PolarHBondContact O-N 3.36Å; E23-H25 PolarHBondContact O-ND1 3.41Å; E23-H25 IonicContact OE2-CE1 3.14Å; E23-K50 IonicContact OE1-NZ 3.98Å
24	V	77.9	Confident	77.5	Confident	86 Å²	86	105.9 Å²	105.9	52%	0.521	54%	0.535	S	S	.	.			trans	-81.6	114.5	-178.5	-179.5	0	0	0	0	108.4	V16 K22	V16-V24 HydrophobicContact CB-CG2 4.27Å; V16-V24 HydrophobicContact CG1-CB 4.34Å; V16-V24 HydrophobicContact CG1-CG1 4.14Å; V16-V24 HydrophobicContact CG1-CG2 3.37Å; V16-V24 HydrophobicContact CG2-CG1 4.45Å; V16-V24 HydrophobicContact CG2-CG2 4.4Å; K22-V24 PolarHBondContact O-N 2.9Å; K22-V24 VanDerWaalsContact O-N 3.15Å
25	H	85.3	Confident	78.8	Confident	149 Å²	149	107 Å²	107	69%	0.69	54%	0.535	S	S	*	.			trans	-89.4	116.6	174.1	-76	60.2	0	0	0	109.6	E23	E23-H25 PolarHBondContact O-N 3.36Å; E23-H25 PolarHBondContact O-ND1 3.41Å; E23-H25 IonicContact OE2-CE1 3.14Å
26	L	90.6	Very high	80.3	Confident	59 Å²	59	100.6 Å²	100.6	31%	0.309	52%	0.524	S	S	.	.	E	Extended strand (participates in β ladder)	trans	-93.7	129.3	176.6	-163	81.2	0	0	0	109.5	I44 K50 C51 E52	L26-I44 HydrophobicContact CD2-CD1 3.72Å; L26-I44 HydrophobicContact CD2-CG1 3.77Å; L26-K50 WeakPolarHBondContact CB-O 3.42Å; L26-C51 HydrophobicContact CB-CB 4.35Å; L26-C51 HydrophobicContact CD2-CB 3.91Å; L26-C51 WeakPolarHBondContact O-CA 3.22Å; L26-E52 PolarHBondContact O-N 3.01Å
27	I	93.9	Very high	81.7	Confident	85 Å²	85	97.3 Å²	97.3	44%	0.436	50%	0.504	S	S	.	.	E	Extended strand (participates in β ladder)	trans	-123.1	123.3	174.1	-53.8	177	0	0	0	108	Y29 E52 H54	I27-Y29 HydrophobicContact CG2-CD2 4.24Å; I27-Y29 HydrophobicContact CG2-CE2 3.67Å; I27-E52 CarbonylContact C-O 3.58Å; I27-E52 WeakPolarHBondContact CA-O 3.45Å; I27-E52 HydrophobicContact CG1-CB 4.33Å; I27-H54 VanDerWaalsContact CG2-CD2 3.48Å; I27-H54 WeakPolarHBondContact CG2-CD2 3.42Å
28	L	92.7	Very high	83.1	Confident	22 Å²	22	92.4 Å²	92.4	12%	0.115	48%	0.482	C	S	.	.	E	Extended strand (participates in β ladder)	trans	-108.6	108.8	178.2	179.7	64.8	0	0	0	110.3	H30 V40 R41 I44 C51 E52 H54	L28-H30 HydrophobicContact CD2-CB 4.38Å; L28-H30 HydrophobicContact CG-CB 4.16Å; L28-V40 HydrophobicContact CD1-CG1 3.71Å; L28-V40 HydrophobicContact CD2-CG1 4.21Å; L28-R41 HydrophobicContact CD2-CG 3.67Å; L28-I44 HydrophobicContact CB-CD1 4.46Å; L28-I44 HydrophobicContact CD2-CD1 3.92Å; L28-C51 VanDerWaalsContact CB-SG 3.54Å; L28-E52 PolarHBondContact N-O 3.02Å; L28-H54 PolarHBondContact O-N 3.4Å
29	Y	94.1	Very high	84.6	Confident	139 Å²	139	94 Å²	94	55%	0.545	47%	0.474	S	S	.	.	E	Extended strand (participates in β ladder)	trans	-86.3	120	163.2	-65.6	-80.4	0	0	0	109.2	I27 H54	I27-Y29 HydrophobicContact CG2-CD2 4.24Å; I27-Y29 HydrophobicContact CG2-CE2 3.67Å; Y29-H54 HydrophobicContact CD1-CB 3.56Å; Y29-H54 AromaticContact CD1-CD2 3.9Å; Y29-H54 HydrophobicContact CE1-CB 3.71Å; Y29-H54 AromaticContact CE1-CD2 3.31Å; Y29-H54 WeakPolarHBondContact CE1-CD2 3.4Å; Y29-H54 AromaticContact CE1-CG 3.68Å; Y29-H54 HydrophobicContact CG-CB 4.48Å; Y29-H54 AromaticContact CZ-CD2 3.58Å
30	H	90.8	Very high	85.7	Confident	14 Å²	14	93.6 Å²	93.6	7%	0.065	47%	0.471	C	S	.	.	E	Extended strand (participates in β ladder)	trans	-137.1	168.7	-178.2	68.9	77.8	0	0	0	112.3	L28 E53 H54 D55 K56	L28-H30 HydrophobicContact CD2-CB 4.38Å; L28-H30 HydrophobicContact CG-CB 4.16Å; H30-E53 IonicContact NE2-OE2 3.54Å; H30-H54 PolarHBondContact N-O 3.22Å; H30-D55 IonicContact ND1-OD1 3.72Å; H30-D55 WeakPolarHBondContact O-CA 3.25Å; H30-K56 PolarHBondContact O-N 3.18Å
31	W	91.4	Very high	87.2	Confident	123 Å²	123	91.9 Å²	91.9	47%	0.466	45%	0.446	S	S	.	.			trans	-119.4	127.2	162.4	-177.3	40.8	0	0	0	108.3	H33 S34 S37 D55	W31-H33 HydrophobicContact CD2-CB 4.19Å; W31-H33 HydrophobicContact CE3-CB 4.35Å; W31-H33 HydrophobicContact CH2-CB 4.18Å; W31-H33 HydrophobicContact CZ2-CB 3.99Å; W31-H33 HydrophobicContact CZ3-CB 4.35Å; W31-H33 PolarHBondContact O-N 3.13Å; W31-H33 VanDerWaalsContact O-N 3.14Å; W31-S34 WeakPolarHBondContact O-CB 3.38Å; W31-S34 PolarHBondContact O-N 3.09Å; W31-S37 PolarHBondContact N-OG 3.13Å; W31-S37 WeakPolarHBondContact O-CB 3.36Å; W31-S37 PolarHBondContact O-OG 3.48Å; W31-D55 WeakPolarHBondContact CA-OD1 3.26Å
32	T	85.8	Confident	88.5	Confident	52 Å²	52	89.7 Å²	89.7	32%	0.319	43%	0.434	S	S	.	.	T	Hydrogen-bonded Turn	trans	-60	-25.8	-171.6	-68.9	0	0	0	0	114.1	D55	T32-D55 WeakPolarHBondContact CB-OD2 3.38Å; T32-D55 PolarHBondContact N-OD1 2.72Å; T32-D55 PolarHBondContact OG1-OD1 3.16Å; T32-D55 PolarHBondContact OG1-OD2 3.47Å
33	H	86.4	Confident	89.7	Confident	146 Å²	146	85.4 Å²	85.4	68%	0.676	42%	0.421	S	S	*	.	T	Hydrogen-bonded Turn	trans	-89	-0.5	178.4	-63.9	176.2	0	0	0	114.5	W31	W31-H33 HydrophobicContact CD2-CB 4.19Å; W31-H33 HydrophobicContact CE3-CB 4.35Å; W31-H33 HydrophobicContact CH2-CB 4.18Å; W31-H33 HydrophobicContact CZ2-CB 3.99Å; W31-H33 HydrophobicContact CZ3-CB 4.35Å; W31-H33 PolarHBondContact O-N 3.13Å; W31-H33 VanDerWaalsContact O-N 3.14Å
34	S	89.6	Confident	90.6	Very high	36 Å²	36	80.2 Å²	80.2	25%	0.252	40%	0.397	S	S	.	.			trans	-84.9	120.4	176.3	165.3	0	0	0	0	111.1	W31 S36 S37 Q38	W31-S34 WeakPolarHBondContact O-CB 3.38Å; W31-S34 PolarHBondContact O-N 3.09Å; S34-S36 PolarHBondContact O-N 3.06Å; S34-S36 PolarHBondContact OG-N 3.25Å; S34-S37 VanDerWaalsContact CB-OG 3.26Å; S34-S37 WeakPolarHBondContact CB-OG 3.47Å; S34-S37 VanDerWaalsContact O-CB 3.25Å; S34-S37 WeakPolarHBondContact O-CB 3.38Å; S34-S37 PolarHBondContact O-N 3.13Å; S34-S37 PolarHBondContact OG-N 3.47Å; S34-S37 PolarHBondContact OG-OG 2.86Å; S34-Q38 PolarHBondContact O-N 3.31Å
35	F	90.7	Very high	91.2	Very high	136 Å²	136	79.6 Å²	79.6	60%	0.596	40%	0.401	S	S	*	.	H	α-helix	trans	-58.4	-34.3	174.7	-173.5	-114.8	0	0	0	112.2	S37 Q38 K39	F35-S37 VanDerWaalsContact C-N 3.34Å; F35-Q38 WeakPolarHBondContact O-CB 3.46Å; F35-Q38 PolarHBondContact O-N 3.21Å; F35-K39 HydrophobicContact CE1-CD 4.38Å; F35-K39 PolarHBondContact O-N 3.4Å; F35-K39 VanDerWaalsContact O-N 3.16Å
36	S	90.8	Very high	91.5	Very high	81 Å²	81	79.6 Å²	79.6	57%	0.566	40%	0.401	S	S	*	.	H	α-helix	trans	-64.2	-39.6	174.2	-59.3	0	0	0	0	111.8	S34 Q38 K39 V40	S34-S36 PolarHBondContact O-N 3.06Å; S34-S36 PolarHBondContact OG-N 3.25Å; S36-Q38 VanDerWaalsContact C-N 3.3Å; S36-Q38 PolarHBondContact O-N 3.27Å; S36-K39 PolarHBondContact O-N 2.79Å; S36-V40 WeakPolarHBondContact O-CG2 3.49Å; S36-V40 PolarHBondContact O-N 3.43Å
37	S	91.9	Very high	91.4	Very high	16 Å²	16	82.2 Å²	82.2	11%	0.112	41%	0.41	C	S	.	.	H	α-helix	trans	-60.8	-41.4	174.7	-56.2	0	0	0	0	111.4	W31 S34 F35 K39 V40 R41	W31-S37 PolarHBondContact N-OG 3.13Å; W31-S37 WeakPolarHBondContact O-CB 3.36Å; W31-S37 PolarHBondContact O-OG 3.48Å; S34-S37 VanDerWaalsContact CB-OG 3.26Å; S34-S37 WeakPolarHBondContact CB-OG 3.47Å; S34-S37 VanDerWaalsContact O-CB 3.25Å; S34-S37 WeakPolarHBondContact O-CB 3.38Å; S34-S37 PolarHBondContact O-N 3.13Å; S34-S37 PolarHBondContact OG-N 3.47Å; S34-S37 PolarHBondContact OG-OG 2.86Å; F35-S37 VanDerWaalsContact C-N 3.34Å; S37-K39 PolarHBondContact O-N 2.87Å; S37-V40 PolarHBondContact O-N 3.28Å; S37-R41 WeakPolarHBondContact O-CG 3.34Å; S37-R41 PolarHBondContact O-N 3.07Å
38	Q	93	Very high	91.1	Very high	88 Å²	88	82.5 Å²	82.5	41%	0.411	43%	0.425	S	S	.	.	H	α-helix	trans	-61.9	-43.6	178.7	-65.8	171.5	9.6	0	0	111.6	S34 F35 S36 V40 R41 L42	S34-Q38 PolarHBondContact O-N 3.31Å; F35-Q38 WeakPolarHBondContact O-CB 3.46Å; F35-Q38 PolarHBondContact O-N 3.21Å; S36-Q38 VanDerWaalsContact C-N 3.3Å; S36-Q38 PolarHBondContact O-N 3.27Å; Q38-V40 VanDerWaalsContact C-N 3.32Å; Q38-V40 PolarHBondContact O-N 3.16Å; Q38-R41 PolarHBondContact O-N 3.13Å; Q38-L42 WeakPolarHBondContact O-CG 3.31Å; Q38-L42 PolarHBondContact O-N 2.95Å
39	K	94.6	Very high	91	Very high	83 Å²	83	84.8 Å²	84.8	36%	0.361	44%	0.437	S	S	.	.	H	α-helix	trans	-58.8	-43.7	175.7	-63.5	-172.9	-164.2	-175.8	0	111.7	D6 F35 S36 S37 L42 V43	D6-K39 IonicContact OD1-NZ 3.13Å; D6-K39 IonicContact OD2-NZ 3.27Å; D6-K39 PolarHBondContact OD2-NZ 3.02Å; D6-K39 VanDerWaalsContact OD2-NZ 3.14Å; F35-K39 HydrophobicContact CE1-CD 4.38Å; F35-K39 PolarHBondContact O-N 3.4Å; F35-K39 VanDerWaalsContact O-N 3.16Å; S36-K39 PolarHBondContact O-N 2.79Å; S37-K39 PolarHBondContact O-N 2.87Å; K39-L42 PolarHBondContact O-N 3.33Å; K39-V43 WeakPolarHBondContact O-CG2 3.48Å; K39-V43 PolarHBondContact O-N 3.25Å; K39-V43 VanDerWaalsContact O-N 3.13Å
40	V	93.2	Very high	90.8	Very high	67 Å²	67	86.1 Å²	86.1	41%	0.406	45%	0.446	S	S	.	.	H	α-helix	trans	-65.6	-43.9	179.6	176.7	0	0	0	0	111.3	L28 S36 S37 Q38 L42 V43 I44	L28-V40 HydrophobicContact CD1-CG1 3.71Å; L28-V40 HydrophobicContact CD2-CG1 4.21Å; S36-V40 WeakPolarHBondContact O-CG2 3.49Å; S36-V40 PolarHBondContact O-N 3.43Å; S37-V40 PolarHBondContact O-N 3.28Å; Q38-V40 VanDerWaalsContact C-N 3.32Å; Q38-V40 PolarHBondContact O-N 3.16Å; V40-L42 VanDerWaalsContact C-N 3.3Å; V40-L42 PolarHBondContact O-N 3.4Å; V40-V43 PolarHBondContact O-N 3.19Å; V40-I44 HydrophobicContact CG1-CD1 3.85Å; V40-I44 HydrophobicContact CG1-CG1 4.48Å; V40-I44 WeakPolarHBondContact O-CG1 3.44Å; V40-I44 PolarHBondContact O-N 3.48Å
41	R	91.6	Very high	90.8	Very high	101 Å²	101	87.2 Å²	87.2	38%	0.381	45%	0.454	S	S	.	.	H	α-helix	trans	-59.2	-40.5	176.2	-68.4	176.6	79.8	-166.2	3.3	112.2	L28 S37 Q38 I44 A45 E53	L28-R41 HydrophobicContact CD2-CG 3.67Å; S37-R41 WeakPolarHBondContact O-CG 3.34Å; S37-R41 PolarHBondContact O-N 3.07Å; Q38-R41 PolarHBondContact O-N 3.13Å; R41-I44 PolarHBondContact O-N 3.32Å; R41-A45 PolarHBondContact O-N 3.27Å; R41-E53 IonicContact CZ-OE2 3.28Å; R41-E53 VanDerWaalsContact CZ-OE2 3.28Å; R41-E53 IonicContact NE-OE2 2.72Å; R41-E53 PolarHBondContact NE-OE2 3.45Å; R41-E53 IonicContact NH2-OE2 3.14Å; R41-E53 PolarHBondContact NH2-OE2 3.33Å; R41-E53 VanDerWaalsContact NH2-OE2 3.14Å
42	L	93.8	Very high	91	Very high	112 Å²	112	86.3 Å²	86.3	59%	0.586	46%	0.455	S	S	*	.	H	α-helix	trans	-62	-47.3	175.5	-71.2	171.4	0	0	0	111.8	Q38 K39 V40 I44 A45 E46	Q38-L42 WeakPolarHBondContact O-CG 3.31Å; Q38-L42 PolarHBondContact O-N 2.95Å; K39-L42 PolarHBondContact O-N 3.33Å; V40-L42 VanDerWaalsContact C-N 3.3Å; V40-L42 PolarHBondContact O-N 3.4Å; L42-I44 VanDerWaalsContact C-N 3.32Å; L42-I44 PolarHBondContact O-N 3.02Å; L42-A45 PolarHBondContact O-N 3.44Å; L42-E46 WeakPolarHBondContact O-CB 3.35Å; L42-E46 WeakPolarHBondContact O-CG 3.32Å; L42-E46 PolarHBondContact O-N 3.18Å
43	V	92.5	Very high	91.3	Very high	66 Å²	66	88.2 Å²	88.2	40%	0.4	46%	0.461	S	S	.	.	H	α-helix	trans	-62.9	-39.4	179	174.5	0	0	0	0	111.6	K39 V40 A45 E46 K47	K39-V43 WeakPolarHBondContact O-CG2 3.48Å; K39-V43 PolarHBondContact O-N 3.25Å; K39-V43 VanDerWaalsContact O-N 3.13Å; V40-V43 PolarHBondContact O-N 3.19Å; V43-A45 VanDerWaalsContact C-N 3.35Å; V43-E46 PolarHBondContact O-N 3.39Å; V43-K47 HydrophobicContact CG1-CG 4.32Å; V43-K47 WeakPolarHBondContact O-CB 3.43Å; V43-K47 WeakPolarHBondContact O-CG 3.26Å; V43-K47 PolarHBondContact O-N 2.97Å
44	I	91.6	Very high	91.6	Very high	24 Å²	24	84.2 Å²	84.2	12%	0.123	44%	0.442	C	S	.	.	H	α-helix	trans	-60.5	-46	175.7	-70.8	166.5	0	0	0	110.6	L26 L28 V40 R41 L42 K47 A48 L49 C51	L26-I44 HydrophobicContact CD2-CD1 3.72Å; L26-I44 HydrophobicContact CD2-CG1 3.77Å; L28-I44 HydrophobicContact CB-CD1 4.46Å; L28-I44 HydrophobicContact CD2-CD1 3.92Å; V40-I44 HydrophobicContact CG1-CD1 3.85Å; V40-I44 HydrophobicContact CG1-CG1 4.48Å; V40-I44 WeakPolarHBondContact O-CG1 3.44Å; V40-I44 PolarHBondContact O-N 3.48Å; R41-I44 PolarHBondContact O-N 3.32Å; L42-I44 VanDerWaalsContact C-N 3.32Å; L42-I44 PolarHBondContact O-N 3.02Å; I44-K47 PolarHBondContact O-N 3.39Å; I44-A48 PolarHBondContact O-N 3.32Å; I44-A48 VanDerWaalsContact O-N 3.13Å; I44-L49 HydrophobicContact CG2-CB 4.21Å; I44-L49 PolarHBondContact O-N 3.14Å; I44-L49 VanDerWaalsContact O-N 3.09Å; I44-C51 HydrophobicContact CD1-CB 4.4Å; I44-C51 HydrophobicContact CG2-CB 3.75Å
45	A	90.6	Very high	91.5	Very high	73 Å²	73	85.2 Å²	85.2	60%	0.603	45%	0.445	S	S	*	.	H	α-helix	trans	-65.3	-45.8	178	0	0	0	0	0	112.4	R41 L42 V43 K47 A48	R41-A45 PolarHBondContact O-N 3.27Å; L42-A45 PolarHBondContact O-N 3.44Å; V43-A45 VanDerWaalsContact C-N 3.35Å; A45-K47 PolarHBondContact O-N 3.06Å; A45-A48 PolarHBondContact O-N 3.21Å
46	E	92.7	Very high	91.1	Very high	148 Å²	148	85.5 Å²	85.5	69%	0.692	45%	0.446	S	S	*	.	H	α-helix	trans	-60.4	-30.2	177.5	-76.2	179.6	174.4	0	0	113	L42 V43	L42-E46 WeakPolarHBondContact O-CB 3.35Å; L42-E46 WeakPolarHBondContact O-CG 3.32Å; L42-E46 PolarHBondContact O-N 3.18Å; V43-E46 PolarHBondContact O-N 3.39Å
47	K	88.6	Confident	90.1	Very high	114 Å²	114	88.9 Å²	88.9	50%	0.496	45%	0.452	S	S	.	.	T	Hydrogen-bonded Turn	trans	-95.1	1.6	179.1	-61	-63	175.8	-167.2	0	113.3	V43 I44 A45 L49	V43-K47 HydrophobicContact CG1-CG 4.32Å; V43-K47 WeakPolarHBondContact O-CB 3.43Å; V43-K47 WeakPolarHBondContact O-CG 3.26Å; V43-K47 PolarHBondContact O-N 2.97Å; I44-K47 PolarHBondContact O-N 3.39Å; A45-K47 PolarHBondContact O-N 3.06Å; K47-L49 HydrophobicContact CB-CD1 3.99Å; K47-L49 HydrophobicContact CB-CD2 4.42Å; K47-L49 HydrophobicContact CB-CG 3.75Å; K47-L49 PolarHBondContact O-N 2.85Å
48	A	87.6	Confident	88.6	Confident	91 Å²	91	96 Å²	96	75%	0.752	48%	0.484	S	S	*	.	T	Hydrogen-bonded Turn	trans	49.5	39.1	-176.8	0	0	0	0	0	113.2	I44 A45	I44-A48 PolarHBondContact O-N 3.32Å; I44-A48 VanDerWaalsContact O-N 3.13Å; A45-A48 PolarHBondContact O-N 3.21Å
49	L	88.8	Confident	86.8	Confident	70 Å²	70	97.3 Å²	97.3	37%	0.366	50%	0.5	S	S	.	.			trans	-81	133.7	-179.6	-62.3	174.2	0	0	0	110	L14 I44 K47 C51	L14-L49 HydrophobicContact CD2-CD1 3.86Å; I44-L49 HydrophobicContact CG2-CB 4.21Å; I44-L49 PolarHBondContact O-N 3.14Å; I44-L49 VanDerWaalsContact O-N 3.09Å; K47-L49 HydrophobicContact CB-CD1 3.99Å; K47-L49 HydrophobicContact CB-CD2 4.42Å; K47-L49 HydrophobicContact CB-CG 3.75Å; K47-L49 PolarHBondContact O-N 2.85Å; L49-C51 PolarHBondContact O-N 3.45Å
50	K	90	Very high	85	Confident	167 Å²	167	100.5 Å²	100.5	73%	0.726	56%	0.556	S	S	*	*			trans	-66.2	125.4	166.9	-66.5	-176.5	-173.9	171.8	0	108.4	E23 L26	E23-K50 IonicContact OE1-NZ 3.98Å; L26-K50 WeakPolarHBondContact CB-O 3.42Å
51	C	92.4	Very high	84.6	Confident	37 Å²	37	102.2 Å²	102.2	25%	0.25	56%	0.564	C	S	.	*	E	Extended strand (participates in β ladder)	trans	-140.1	134.7	-179	-171.5	0	0	0	0	110.6	L26 L28 I44 L49	L26-C51 HydrophobicContact CB-CB 4.35Å; L26-C51 HydrophobicContact CD2-CB 3.91Å; L26-C51 WeakPolarHBondContact O-CA 3.22Å; L28-C51 VanDerWaalsContact CB-SG 3.54Å; I44-C51 HydrophobicContact CD1-CB 4.4Å; I44-C51 HydrophobicContact CG2-CB 3.75Å; L49-C51 PolarHBondContact O-N 3.45Å
52	E	94.4	Very high	84.2	Confident	104 Å²	104	102.2 Å²	102.2	49%	0.486	57%	0.573	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-86.3	125.8	164.9	-173.5	174.1	174.2	0	0	108.8	L26 I27 L28 H54	L26-E52 PolarHBondContact O-N 3.01Å; I27-E52 CarbonylContact C-O 3.58Å; I27-E52 WeakPolarHBondContact CA-O 3.45Å; I27-E52 HydrophobicContact CG1-CB 4.33Å; L28-E52 PolarHBondContact N-O 3.02Å; E52-H54 IonicContact OE1-CE1 3.52Å; E52-H54 PolarHBondContact OE1-CE1 3.14Å; E52-H54 IonicContact OE1-NE2 3.88Å; E52-H54 PolarHBondContact OE1-NE2 3.01Å
53	E	91.8	Very high	83.7	Confident	93 Å²	93	101.7 Å²	101.7	44%	0.435	57%	0.573	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-106.5	130.3	-177.9	-71.7	-178.5	-98.5	0	0	110.7	H30 R41	H30-E53 IonicContact NE2-OE2 3.54Å; R41-E53 IonicContact CZ-OE2 3.28Å; R41-E53 VanDerWaalsContact CZ-OE2 3.28Å; R41-E53 IonicContact NE-OE2 2.72Å; R41-E53 PolarHBondContact NE-OE2 3.45Å; R41-E53 IonicContact NH2-OE2 3.14Å; R41-E53 PolarHBondContact NH2-OE2 3.33Å; R41-E53 VanDerWaalsContact NH2-OE2 3.14Å
54	H	92.8	Very high	83.1	Confident	61 Å²	61	103.8 Å²	103.8	28%	0.282	58%	0.583	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-124.3	109.9	172.6	-61.1	-67.6	0	0	0	110.1	I27 L28 Y29 H30 E52	I27-H54 VanDerWaalsContact CG2-CD2 3.48Å; I27-H54 WeakPolarHBondContact CG2-CD2 3.42Å; L28-H54 PolarHBondContact O-N 3.4Å; Y29-H54 HydrophobicContact CD1-CB 3.56Å; Y29-H54 AromaticContact CD1-CD2 3.9Å; Y29-H54 HydrophobicContact CE1-CB 3.71Å; Y29-H54 AromaticContact CE1-CD2 3.31Å; Y29-H54 WeakPolarHBondContact CE1-CD2 3.4Å; Y29-H54 AromaticContact CE1-CG 3.68Å; Y29-H54 HydrophobicContact CG-CB 4.48Å; Y29-H54 AromaticContact CZ-CD2 3.58Å; H30-H54 PolarHBondContact N-O 3.22Å; E52-H54 IonicContact OE1-CE1 3.52Å; E52-H54 PolarHBondContact OE1-CE1 3.14Å; E52-H54 IonicContact OE1-NE2 3.88Å; E52-H54 PolarHBondContact OE1-NE2 3.01Å
55	D	89.4	Confident	82.6	Confident	58 Å²	58	108.8 Å²	108.8	31%	0.31	61%	0.612	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-80.5	124.4	171.2	-163	5.7	0	0	0	110.2	H30 W31 T32 E57	H30-D55 IonicContact ND1-OD1 3.72Å; H30-D55 WeakPolarHBondContact O-CA 3.25Å; W31-D55 WeakPolarHBondContact CA-OD1 3.26Å; T32-D55 WeakPolarHBondContact CB-OD2 3.38Å; T32-D55 PolarHBondContact N-OD1 2.72Å; T32-D55 PolarHBondContact OG1-OD1 3.16Å; T32-D55 PolarHBondContact OG1-OD2 3.47Å; D55-E57 PolarHBondContact O-N 3.14Å
56	K	80.4	Confident	82.1	Confident	142 Å²	142	111.1 Å²	111.1	62%	0.617	61%	0.612	S	S	*	*			trans	-95.7	79.8	166.8	-63.6	-163.5	-177.5	-176.2	0	107.6	H30 H58	H30-K56 PolarHBondContact O-N 3.18Å; K56-H58 PolarHBondContact O-N 2.56Å; K56-H58 VanDerWaalsContact O-N 3.16Å
57	E	70.3	Confident	81.3	Confident	151 Å²	151	108.5 Å²	108.5	71%	0.706	61%	0.606	S	S	*	*	P	Polyproline II helix	trans	-59	116.6	164.1	-58.3	-173.9	170.9	0	0	107.2	D55 P59	D55-E57 PolarHBondContact O-N 3.14Å; E57-P59 VanDerWaalsContact O-CD 3.26Å; E57-P59 WeakPolarHBondContact O-CD 3.38Å
58	H	59.8	Low	80.8	Confident	165 Å²	165	108.1 Å²	108.1	76%	0.764	62%	0.615	S	S	*	*	P	Polyproline II helix	trans	-67.7	118.4	170.7	-139.3	84.7	0	0	0	106.5	K56 G60	K56-H58 PolarHBondContact O-N 2.56Å; K56-H58 VanDerWaalsContact O-N 3.16Å; H58-G60 PolarHBondContact O-N 3.16Å; H58-G60 VanDerWaalsContact O-N 3.16Å
59	P	55.6	Low	80.2	Confident	116 Å²	116	109.5 Å²	109.5	75%	0.753	60%	0.604	S	S	*	*	P	Polyproline II helix	trans	-63.9	121.5	174	25.8	-30.3	0	0	0	107.5	E57	E57-P59 VanDerWaalsContact O-CD 3.26Å; E57-P59 WeakPolarHBondContact O-CD 3.38Å
60	G	56.8	Low	79.4	Confident	150 Å²	150	113.1 Å²	113.1	100%	1.546	63%	0.625	S	S	*	*			trans	-79.6	0	169.2	0	0	0	0	0	111.5	H58	H58-G60 PolarHBondContact O-N 3.16Å; H58-G60 VanDerWaalsContact O-N 3.16Å

Retrieved 60 of 60 residues in 101.7 ms (Link to these results)

U.S. Privacy Notice - Disclaimer / Registrations / Copyright Statement - Linking Policy - Notice of Privacy Practices (HIPAA) - Notice of Non‑Discrimination
© Copyright 2026 St. Jude Children's Research Hospital, a not-for-profit, section 501(c)(3).