A0A087WR88_MOUSE Loading...

Homeobox A7

AlphaFold DB , UniProt , Accession A0A087WR88, Species MOUSE (Mus musculus, Mouse), Gene Hoxa7, Length 77 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M49.5Very low65.6Low250 Ų250137.9 Ų137.9100%1.23282%0.823SS**  01190-70171.5-179.200107.1
2S59.5Low65.9Low127 Ų127146.3 Ų146.389%0.88883%0.829SS**  trans-113.7111.9-177.7-171.40000108.2
3T62.3Low66.2Low136 Ų136144.5 Ų144.583%0.83483%0.827SS**PPolyproline II helixtrans-91.1116.6178.3-53.30000107.9
4A67.4Low66.5Low82 Ų82141 Ų14168%0.67882%0.824SS**PPolyproline II helixtrans-64.3141.617700000110.7S6A4-S6 PolarHBondContact O-N 3.19Å
5P66.5Low67.1Low111 Ų111142.9 Ų142.972%0.72182%0.824SS**PPolyproline II helixtrans-68.3129177.727.5-32.3000109.9I7P5-I7 PolarHBondContact O-N 3.11Å
6S69.6Low67.5Low123 Ų123139.9 Ų139.986%0.8682%0.822SS**  trans-70.297.6174176.60000109.4A4 R8A4-S6 PolarHBondContact O-N 3.19Å; S6-R8 PolarHBondContact O-N 2.98Å
7I69.1Low67.9Low152 Ų152145.8 Ų145.878%0.77983%0.827SS**  trans-72.6113.4176-51.5-173.8000107.9P5 A9P5-I7 PolarHBondContact O-N 3.11Å; I7-A9 PolarHBondContact O-N 3.09Å; I7-A9 VanDerWaalsContact O-N 3.12Å
8R67.3Low68.4Low226 Ų226147.8 Ų147.885%0.85383%0.829SS**  trans-60.2115.8177.2-170.1178-171.5-145.52.3108.7S6S6-R8 PolarHBondContact O-N 2.98Å
9A70.1Confident68.6Low78 Ų78146.5 Ų146.565%0.64583%0.827SS**PPolyproline II helixtrans-59.9142.5176.800000110.2I7 S11I7-A9 PolarHBondContact O-N 3.09Å; I7-A9 VanDerWaalsContact O-N 3.12Å; A9-S11 PolarHBondContact O-N 2.73Å; A9-S11 VanDerWaalsContact O-N 3.15Å
10P68.6Low69.2Low127 Ų127145.1 Ų145.183%0.82582%0.822SS**PPolyproline II helixtrans-61121.1173.5-13.325.7000108.7R12P10-R12 PolarHBondContact O-N 3.09Å
11S72.1Confident69.5Low105 Ų105143.6 Ų143.673%0.73482%0.818SS**PPolyproline II helixtrans-60.7123.1171.733.60000108.9A9A9-S11 PolarHBondContact O-N 2.73Å; A9-S11 VanDerWaalsContact O-N 3.15Å
12R69.5Low70.8Confident239 Ų239137.7 Ų137.790%0.90280%0.796SS**PPolyproline II helixtrans-54.8135.1178-87.8-177.5161.6-150.3-3.2110P10 A14P10-R12 PolarHBondContact O-N 3.09Å; R12-A14 PolarHBondContact O-N 3.14Å
13P69.3Low71.6Confident123 Ų123137.9 Ų137.980%0.79979%0.792SS**PPolyproline II helixtrans-62136.8173.621.8-27.2000109.7M15P13-M15 PolarHBondContact O-N 2.97Å
14A70.6Confident72.3Confident95 Ų95136.3 Ų136.379%0.78579%0.786SS**PPolyproline II helixtrans-60.1133.9174.200000109.1R12 A16R12-A14 PolarHBondContact O-N 3.14Å; A14-A16 PolarHBondContact O-N 3Å
15M74.7Confident72.8Confident169 Ų169138.2 Ų138.283%0.83379%0.791SS**  trans-60.3112.2172.2-81.3171.749.100108.4P13 W17P13-M15 PolarHBondContact O-N 2.97Å; M15-W17 PolarHBondContact O-N 3.3Å
16A74Confident73.4Confident95 Ų95137.2 Ų137.279%0.78579%0.792SS**PPolyproline II helixtrans-66.7121.1168.200000107.5A14 E18A14-A16 PolarHBondContact O-N 3Å; A16-E18 PolarHBondContact O-N 2.95Å
17W74Confident73.6Confident240 Ų240136.4 Ų136.491%0.90978%0.784SS**PPolyproline II helixtrans-70.5129.1174.7-67.770.9000108.2M15M15-W17 PolarHBondContact O-N 3.3Å
18E77.4Confident73.8Confident183 Ų183135.1 Ų135.186%0.85579%0.785SS**PPolyproline II helixtrans-68.1134.2175-76.3-160.1153.600110.3A16 T20A16-E18 PolarHBondContact O-N 2.95Å; E18-T20 PolarHBondContact O-N 3.09Å
19P72.7Confident74.1Confident122 Ų122130.6 Ų130.679%0.79278%0.783SS**PPolyproline II helixtrans-68.2127.1173.728-31.8000109.3
20T79.8Confident74.1Confident119 Ų119132.8 Ų132.873%0.7379%0.789SS**PPolyproline II helixtrans-66129.6176.4-38.80000109.6E18 T22E18-T20 PolarHBondContact O-N 3.09Å; T20-T22 PolarHBondContact O-N 2.81Å; T20-T22 VanDerWaalsContact O-N 3.08Å
21P75.9Confident74.1Confident113 Ų113136.2 Ų136.273%0.73479%0.79SS**PPolyproline II helixtrans-63.9116.1177.824.7-32.3000109.5T23P21-T23 PolarHBondContact O-N 3.09Å
22T76.6Confident73.3Confident127 Ų127137.1 Ų137.178%0.77979%0.792SS**  trans-88.3105.8175.5-59.20000108.4T20T20-T22 PolarHBondContact O-N 2.81Å; T20-T22 VanDerWaalsContact O-N 3.08Å
23T76.1Confident72.8Confident130 Ų130130.3 Ų130.380%0.79878%0.781SS**  trans-89.9114.1174.5-57.20000109.5P21P21-T23 PolarHBondContact O-N 3.09Å
24C77.4Confident72.3Confident104 Ų104130.8 Ų130.870%0.70378%0.784SS**PPolyproline II helixtrans-76.1136.5172.6-63.10000110.3
25P77.9Confident72Confident122 Ų122129.2 Ų129.279%0.79278%0.777SS**PPolyproline II helixtrans-66.1145.5174.527.7-33.3000110.7
26A77.9Confident71Confident90 Ų90127.3 Ų127.374%0.74478%0.78SS**PPolyproline II helixtrans-64.8142176.200000110.7
27P75.1Confident70.3Confident106 Ų106127 Ų12769%0.68878%0.777SS**PPolyproline II helixtrans-63.2147.6175.827.5-33.9000110.3T29P27-T29 PolarHBondContact O-N 3.45Å
28P72.7Confident69.4Low125 Ų125121.8 Ų121.881%0.81277%0.772SS**PPolyproline II helixtrans-61.7126.8178.325.8-33000109.8T30P28-T30 PolarHBondContact O-N 3.44Å
29T73.8Confident68.5Low131 Ų131119.4 Ų119.480%0.80477%0.77SS**  trans-85.4108.8175.250.70000109.4P27 K31P27-T29 PolarHBondContact O-N 3.45Å; T29-K31 PolarHBondContact O-N 3.25Å
30T70.9Confident67.9Low124 Ų124118.6 Ų118.676%0.76177%0.767SS**  trans-77.3107.7174.2-51.90000109.2P28 T32P28-T30 PolarHBondContact O-N 3.44Å; T30-T32 PolarHBondContact O-N 3.32Å
31K66.6Low66.6Low198 Ų198118.7 Ų118.786%0.86177%0.77SS**  trans-78.495.3168.9-64.5-176.177176.50108.7T29 S33T29-K31 PolarHBondContact O-N 3.25Å; K31-S33 PolarHBondContact O-N 3.19Å
32T57.3Low66.1Low124 Ų124123 Ų12376%0.76178%0.777SS**  trans-77.7108.7169.8-54.60000108.6T30T30-T32 PolarHBondContact O-N 3.32Å
33S59Low65.4Low96 Ų96121 Ų12167%0.67177%0.773SS**  trans-73.3131.7174.6-1650000110.2K31 G35K31-S33 PolarHBondContact O-N 3.19Å; S33-G35 PolarHBondContact O-N 2.93Å
34P58.3Low64.5Low134 Ų134120.4 Ų120.487%0.8777%0.772SS**SBendtrans-79.874.4177.532.2-31.5000109.4
35G63.2Low63.9Low62 Ų62120 Ų12064%0.63978%0.776SS**  trans171.190.5177.800000112.6S33S33-G35 PolarHBondContact O-N 2.93Å
36S53.7Low63.1Low128 Ų128120.8 Ų120.890%0.89578%0.779SS**  176.9139.3123.5-155.80000109.3
37A60.2Low62.1Low88 Ų88127.6 Ų127.673%0.72779%0.785SS**  trans-71.9144.4-166.800000114.3
38V55.2Low61.5Low131 Ų131133.9 Ų133.979%0.79480%0.795SS**  trans35.398.9149.9-167.40000117
39T57.3Low60.8Low134 Ų134134 Ų13482%0.82279%0.794SS**  trans-107.4127.5139.748.40000106.8
40S59.9Low60.2Low104 Ų104139.2 Ų139.273%0.72780%0.799SS**  trans-49.3129.9178.5-59.80000109.8K42S40-K42 PolarHBondContact O-N 3.4Å
41P54.3Low59.7Low122 Ų122136.6 Ų136.679%0.79279%0.79SS**  trans-62.3115175.423-29000107.6A43P41-A43 PolarHBondContact O-N 3.12Å
42K63.5Low59Low204 Ų204132.6 Ų132.689%0.88779%0.785SS**  trans-51.5115164.5-174.2105.3174-172.70105.6S40S40-K42 PolarHBondContact O-N 3.4Å
43A62Low59Low84 Ų84136.3 Ų136.369%0.69479%0.791SS**PPolyproline II helixtrans-47.2132.6-176.700000109.6P41 A45P41-A43 PolarHBondContact O-N 3.12Å; A43-A45 PolarHBondContact O-N 2.94Å; A43-A45 VanDerWaalsContact O-N 3.14Å
44P58.7Low58.9Low117 Ų117137.7 Ų137.776%0.7680%0.796SS**PPolyproline II helixtrans-60.1124.2178.923.1-30.6000108T46P44-T46 PolarHBondContact O-N 3.11Å; P44-T46 VanDerWaalsContact O-N 3.09Å
45A64.9Low58.6Low95 Ų95135.6 Ų135.679%0.78579%0.79SS**PPolyproline II helixtrans-51.9122169.200000107.5A43 R47A43-A45 PolarHBondContact O-N 2.94Å; A43-A45 VanDerWaalsContact O-N 3.14Å; A45-R47 VanDerWaalsContact C-N 3.29Å; A45-R47 PolarHBondContact O-N 3.26Å
46T60.8Low58.4Low140 Ų140144.2 Ų144.286%0.85980%0.803SS**  trans-57.892.8-178.7-43.30000108.9P44 R48P44-T46 PolarHBondContact O-N 3.11Å; P44-T46 VanDerWaalsContact O-N 3.09Å; T46-R48 PolarHBondContact O-N 3.25Å; T46-R48 VanDerWaalsContact O-N 3.09Å
47R57.3Low58.7Low233 Ų233143.9 Ų143.988%0.87980%0.798SS**  trans-69.7108.8176.9-172.2173.4179.2-115.43.3106.2A45 T49A45-R47 VanDerWaalsContact C-N 3.29Å; A45-R47 PolarHBondContact O-N 3.26Å; R47-T49 PolarHBondContact O-N 3.48Å
48R62.5Low58.7Low238 Ų238148.8 Ų148.890%0.89880%0.803SS**  trans-47.7112.3173.2-78.6179.8165.5173.3-4.3109.2T46 R50T46-R48 PolarHBondContact O-N 3.25Å; T46-R48 VanDerWaalsContact O-N 3.09Å; R48-R50 PolarHBondContact O-N 3.08Å; R48-R50 VanDerWaalsContact O-N 3.11Å
49T57.3Low59.1Low128 Ų128148.6 Ų148.679%0.78580%0.804SS**  trans-65.7107170.4-49.20000107.4R47 A51R47-T49 PolarHBondContact O-N 3.48Å; T49-A51 PolarHBondContact O-N 3.32Å
50R61.4Low59.3Low239 Ų239148.9 Ų148.990%0.90281%0.806SS**  trans-64.2117.6160.1-87.4-176.8173.3-113.61.4105.8R48 C52R48-R50 PolarHBondContact O-N 3.08Å; R48-R50 VanDerWaalsContact O-N 3.11Å; R50-C52 PolarHBondContact O-N 3.49Å
51A59.7Low59.2Low69 Ų69149.1 Ų149.157%0.5781%0.807SS**  trans-48127.9-178.700000110.8T49 F53T49-A51 PolarHBondContact O-N 3.32Å; A51-F53 VanDerWaalsContact C-N 3.31Å; A51-F53 HydrophobicContact CB-CD2 4.27Å; A51-F53 HydrophobicContact CB-CE2 4.22Å; A51-F53 PolarHBondContact O-N 3.37Å
52C51.4Low59.4Low114 Ų114147.2 Ų147.277%0.7780%0.801SS**  trans-63.795.6162.1-61.60000107.4R50 T54R50-C52 PolarHBondContact O-N 3.49Å; C52-T54 VanDerWaalsContact O-N 3.09Å; C52-T54 PolarHBondContact O-N 3.45Å; C52-T54 VanDerWaalsContact C-N 3.27Å
53F57.7Low59.1Low202 Ų202143 Ų14389%0.88680%0.797SS**  trans-76.887.7161.4-86-83.2000107.7A51A51-F53 VanDerWaalsContact C-N 3.31Å; A51-F53 HydrophobicContact CB-CD2 4.27Å; A51-F53 HydrophobicContact CB-CE2 4.22Å; A51-F53 PolarHBondContact O-N 3.37Å
54T56.7Low59Low126 Ų126145 Ų14577%0.77380%0.801SS**  trans-95.7130.716147.90000109.6C52C52-T54 VanDerWaalsContact O-N 3.09Å; C52-T54 PolarHBondContact O-N 3.45Å; C52-T54 VanDerWaalsContact C-N 3.27Å
55A53.6Low58.6Low90 Ų90145.4 Ų145.474%0.74480%0.804SS**  trans8999.5159.300000118.5
56R58.1Low57.9Low243 Ų243144.1 Ų144.192%0.91780%0.8SS**  -138.4124.3101-67-166.1-175-134.6-0.8109.7K58R56-K58 PolarHBondContact O-N 3.03Å
57P59.1Low57.3Low120 Ų120143.9 Ų143.978%0.77980%0.803SS**PPolyproline II helixtrans-65.5130.7161.927-28.9000108
58K62.1Low56.9Low192 Ų192137.3 Ų137.384%0.83580%0.798SS**PPolyproline II helixtrans-68.4134.4169.1-73.8178.9174.7167.30107.8R56 V60R56-K58 PolarHBondContact O-N 3.03Å; K58-V60 PolarHBondContact O-N 3.15Å
59P61.8Low56.7Low127 Ų127131.5 Ų131.583%0.82579%0.789SS**PPolyproline II helixtrans-60.7127.9169.324-29.8000108.6S61P59-S61 PolarHBondContact O-N 3.45Å; P59-S61 VanDerWaalsContact O-N 3.09Å
60V61.6Low56.6Low140 Ų140135.2 Ų135.285%0.84880%0.797SS**  trans-64.2106.2167.1178.10000106K58 A62K58-V60 PolarHBondContact O-N 3.15Å; V60-A62 PolarHBondContact O-N 3.25Å; V60-A62 VanDerWaalsContact O-N 3.11Å
61S58.1Low56Low109 Ų109130.1 Ų130.176%0.76279%0.788SS**  trans-71.9104.2165.8-169.80000106.3P59 S63P59-S61 PolarHBondContact O-N 3.45Å; P59-S61 VanDerWaalsContact O-N 3.09Å; S61-S63 PolarHBondContact O-N 3.22Å
62A58.8Low55.7Low81 Ų81131.8 Ų131.867%0.66979%0.793SS**  trans-60.2100.5172.800000108.2V60 T64V60-A62 PolarHBondContact O-N 3.25Å; V60-A62 VanDerWaalsContact O-N 3.11Å; A62-T64 PolarHBondContact O-N 3.12Å; A62-T64 VanDerWaalsContact O-N 3.12Å
63S57.4Low55.5Low115 Ų115133.6 Ų133.680%0.80480%0.801SS**  trans-71.2103.3160-68.30000106.4S61S61-S63 PolarHBondContact O-N 3.22Å
64T59.7Low55Low127 Ų127126.5 Ų126.578%0.77979%0.785SS**  trans-52.1139.2177.4-15.10000110.6A62A62-T64 PolarHBondContact O-N 3.12Å; A62-T64 VanDerWaalsContact O-N 3.12Å
65P50.7Low54.8Low125 Ų125126.5 Ų126.581%0.81279%0.79SS**  trans-79.6131.2175.631.3-30000110.3
66G50.5Low54.6Low69 Ų69125.5 Ų125.571%0.71179%0.789SS**  trans102.7138.3155.900000116.9
67C48.2Very low54Low135 Ų135125.7 Ų125.791%0.91281%0.808SS**  trans80.497.8162.5-59.20000117.7
68A48.9Very low53.8Low95 Ų95126 Ų12679%0.78581%0.809SS**  -172.7112.4107.400000111.4
69V57.4Low53.3Low116 Ų116122.5 Ų122.570%0.70381%0.808SS**  trans47.6101.9132.8-172.10000117.2D71V69-D71 HydrophobicContact CG1-CB 3.72Å; V69-D71 WeakPolarHBondContact CG1-OD2 3.49Å; V69-D71 PolarHBondContact O-N 3.38Å
70Q55.3Low52.9Low205 Ų205122.3 Ų122.396%0.95881%0.807SS**  trans-75.4106146.9-68.4-175.749.200106.9
71D49.5Very low52.4Low132 Ų132121.2 Ų121.271%0.70681%0.805SS**  trans-113.3154.7163.7-120.4-46.7000108.3V69V69-D71 HydrophobicContact CG1-CB 3.72Å; V69-D71 WeakPolarHBondContact CG1-OD2 3.49Å; V69-D71 PolarHBondContact O-N 3.38Å
72P52.9Low52Low105 Ų105122 Ų12268%0.68281%0.807SS**  -98.8148.4-116.817.93.3000109.7G74P72-G74 VanDerWaalsContact C-N 3.25Å; P72-G74 PolarHBondContact O-N 3.01Å
73T47.3Very low51.5Low151 Ų151124.7 Ų124.793%0.92682%0.816SS**  trans-65.393.5163.6-45.60000108.2
74G47.8Very low51.1Low53 Ų53125.4 Ų125.455%0.54682%0.817SS.*  trans-95.5155.716600000111.4P72P72-G74 VanDerWaalsContact C-N 3.25Å; P72-G74 PolarHBondContact O-N 3.01Å
75S51.3Low50.5Low127 Ų127125.3 Ų125.389%0.88882%0.82SS**  trans80.3119.8-175.677.50000114.2
76G50.3Low50.5Low69 Ų69125.3 Ų125.371%0.71182%0.821SS**  cis133.3103.311.200000108.3
77D46.1Very low50.5Low247 Ų247130.5 Ų130.5100%1.32183%0.831SS**  trans179.50136.8-100.5-54.8000108.9

Retrieved 77 of 77 residues in 62.1 ms (Link to these results)