A0A087WRS0_MOUSE Loading...

C-C motif chemokine ligand 25

AlphaFold DB , UniProt , Accession A0A087WRS0, Species MOUSE (Mus musculus, Mouse), Gene Ccl25, Length 53 aa.

						>A0A087WRS0_MOUSE|A0A087WRS0|Ccl25
MAAERCTFAYQVGPVAFHGFSSPTLPLDHEEAEGKSSGFHLQWFLKGQEEKCL
					

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(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	36	Very low	46.6	Very low	248 Å²	248	161.6 Å²	161.6	100%	1.222	85%	0.852	S	S	*	*				0	139.4	0	-139	71.6	170.1	0	0	107.8
2	A	41.3	Very low	47.3	Very low	95 Å²	95	157.8 Å²	157.8	79%	0.785	84%	0.839	S	S	*	*			trans	-65.8	133.9	-153	0	0	0	0	0	115.9	E4	A2-E4 PolarHBondContact O-N 3.31Å
3	A	45.4	Very low	47.5	Very low	99 Å²	99	149.8 Å²	149.8	82%	0.818	82%	0.818	S	S	*	*			trans	-73.3	112.6	160.7	0	0	0	0	0	107.8	R5	A3-R5 PolarHBondContact O-N 3.38Å
4	E	44.2	Very low	47.8	Very low	185 Å²	185	148.8 Å²	148.8	86%	0.864	82%	0.823	S	S	*	*			trans	-52.4	122.6	175.8	-76.6	175.1	74.3	0	0	110.3	A2 C6	A2-E4 PolarHBondContact O-N 3.31Å; E4-C6 VanDerWaalsContact O-N 3.08Å; E4-C6 PolarHBondContact O-N 3.19Å
5	R	45.3	Very low	48.4	Very low	235 Å²	235	146.3 Å²	146.3	89%	0.887	81%	0.813	S	S	*	*			trans	-68.9	101.4	175.7	-78.8	176.7	158.8	155.1	-6	108.8	A3 T7	A3-R5 PolarHBondContact O-N 3.38Å; R5-T7 PolarHBondContact O-N 2.78Å; R5-T7 PolarHBondContact O-OG1 3.31Å
6	C	44.9	Very low	48.5	Very low	112 Å²	112	142.3 Å²	142.3	76%	0.757	80%	0.804	S	S	*	*			trans	-60	99.3	167.2	-67.5	0	0	0	0	109.1	E4 F8	E4-C6 VanDerWaalsContact O-N 3.08Å; E4-C6 PolarHBondContact O-N 3.19Å; C6-F8 HydrophobicContact CB-CD2 4.45Å; C6-F8 HydrophobicContact CB-CE2 4.46Å; C6-F8 PolarHBondContact O-N 3.29Å
7	T	53.9	Low	48.7	Very low	128 Å²	128	145.1 Å²	145.1	79%	0.785	81%	0.806	S	S	*	*			trans	-85.9	99.2	174.5	-47.6	0	0	0	0	107.4	R5 A9	R5-T7 PolarHBondContact O-N 2.78Å; R5-T7 PolarHBondContact O-OG1 3.31Å; T7-A9 PolarHBondContact O-N 3.43Å
8	F	48.7	Very low	48.7	Very low	196 Å²	196	147.4 Å²	147.4	86%	0.86	81%	0.809	S	S	*	*			trans	-78.3	97.8	170.9	-91.7	-91	0	0	0	108.8	C6 Y10	C6-F8 HydrophobicContact CB-CD2 4.45Å; C6-F8 HydrophobicContact CB-CE2 4.46Å; C6-F8 PolarHBondContact O-N 3.29Å; F8-Y10 PolarHBondContact O-N 3.1Å
9	A	54.4	Low	48.8	Very low	87 Å²	87	142.9 Å²	142.9	72%	0.719	80%	0.8	S	S	*	*			trans	-72	106	170.5	0	0	0	0	0	109.2	T7 Q11	T7-A9 PolarHBondContact O-N 3.43Å; A9-Q11 PolarHBondContact O-N 3.37Å
10	Y	49.8	Very low	48.7	Very low	209 Å²	209	146.3 Å²	146.3	82%	0.82	81%	0.806	S	S	*	*			trans	-84.7	95.8	170.6	-162	-106	0	0	0	108.7	F8 V12	F8-Y10 PolarHBondContact O-N 3.1Å; Y10-V12 HydrophobicContact CD1-CG1 3.56Å; Y10-V12 HydrophobicContact CE1-CG1 3.63Å; Y10-V12 PolarHBondContact O-N 3.47Å
11	Q	48.1	Very low	48.7	Very low	184 Å²	184	144.6 Å²	144.6	86%	0.86	81%	0.805	S	S	*	*			trans	-68.6	107.6	169.3	-81.1	-173.7	44.2	0	0	108.8	A9 G13	A9-Q11 PolarHBondContact O-N 3.37Å; Q11-G13 PolarHBondContact O-N 3.45Å
12	V	55.8	Low	49.2	Very low	115 Å²	115	138.1 Å²	138.1	70%	0.697	78%	0.784	S	S	*	*			trans	-83.2	109	166.5	-71.7	0	0	0	0	108.9	Y10	Y10-V12 HydrophobicContact CD1-CG1 3.56Å; Y10-V12 HydrophobicContact CE1-CG1 3.63Å; Y10-V12 PolarHBondContact O-N 3.47Å
13	G	49.2	Very low	49.8	Very low	55 Å²	55	139 Å²	139	57%	0.567	78%	0.781	S	S	*	*			trans	-65.9	166.4	169	0	0	0	0	0	111.9	Q11 V15	Q11-G13 PolarHBondContact O-N 3.45Å; G13-V15 PolarHBondContact O-N 3.31Å; G13-V15 VanDerWaalsContact O-N 3.14Å
14	P	51.5	Low	50.1	Low	135 Å²	135	140.4 Å²	140.4	88%	0.877	78%	0.78	S	S	*	*			trans	-69.3	115.5	-161.9	27.9	-33.1	0	0	0	111.3	A16	P14-A16 PolarHBondContact O-N 3.42Å
15	V	57.5	Low	50.2	Low	111 Å²	111	139.3 Å²	139.3	67%	0.673	78%	0.779	S	S	*	*			trans	-69.2	114.7	170.5	170.6	0	0	0	0	108.3	G13 F17	G13-V15 PolarHBondContact O-N 3.31Å; G13-V15 VanDerWaalsContact O-N 3.14Å; V15-F17 HydrophobicContact CG1-CD2 4.45Å; V15-F17 HydrophobicContact CG1-CE2 4.25Å; V15-F17 WeakPolarHBondContact O-CD2 3.43Å; V15-F17 PolarHBondContact O-N 3.22Å
16	A	49.3	Very low	50.7	Low	82 Å²	82	132.9 Å²	132.9	68%	0.678	77%	0.768	S	S	*	*			trans	-70.5	106.1	173.8	0	0	0	0	0	109.9	P14 H18	P14-A16 PolarHBondContact O-N 3.42Å; A16-H18 PolarHBondContact O-N 3.23Å
17	F	53	Low	51	Low	191 Å²	191	135.2 Å²	135.2	84%	0.838	77%	0.772	S	S	*	*			trans	-76.1	105.7	169.8	-76.8	-93.1	0	0	0	109.3	V15 G19	V15-F17 HydrophobicContact CG1-CD2 4.45Å; V15-F17 HydrophobicContact CG1-CE2 4.25Å; V15-F17 WeakPolarHBondContact O-CD2 3.43Å; V15-F17 PolarHBondContact O-N 3.22Å; F17-G19 PolarHBondContact O-N 3.3Å
18	H	47.7	Very low	50.6	Low	187 Å²	187	136.3 Å²	136.3	87%	0.866	77%	0.773	S	S	*	*			trans	-79.4	106.9	168.3	-93.9	-86.7	0	0	0	110.3	A16	A16-H18 PolarHBondContact O-N 3.23Å
19	G	51.1	Low	50.9	Low	61 Å²	61	135.6 Å²	135.6	63%	0.629	77%	0.772	S	S	*	*			trans	60.3	92.1	135.3	0	0	0	0	0	118.1	F17	F17-G19 PolarHBondContact O-N 3.3Å
20	F	47.5	Very low	50.7	Low	211 Å²	211	140 Å²	140	93%	0.925	78%	0.778	S	S	*	*			trans	-132.5	104.2	140.6	-144.2	-95.7	0	0	0	109.3	S22	F20-S22 PolarHBondContact O-N 3.26Å
21	S	48.9	Very low	50.4	Low	111 Å²	111	138 Å²	138	78%	0.776	78%	0.776	S	S	*	*			trans	-83.1	104.8	-176.6	-54.6	0	0	0	0	110.9
22	S	45.6	Very low	50.6	Low	111 Å²	111	134.4 Å²	134.4	78%	0.776	78%	0.777	S	S	*	*			trans	61.2	162.3	141.7	-74.4	0	0	0	0	121.7	F20	F20-S22 PolarHBondContact O-N 3.26Å
23	P	53	Low	50.1	Low	114 Å²	114	137.4 Å²	137.4	74%	0.74	78%	0.784	S	S	*	*			cis	-124.1	160.3	-3.8	28.6	-7.3	0	0	0	115.1
24	T	52.1	Low	50.1	Low	128 Å²	128	138 Å²	138	79%	0.785	79%	0.79	S	S	*	*			trans	-43.7	143	170	45.3	0	0	0	0	116.2
25	L	46.4	Very low	50	Low	162 Å²	162	141.7 Å²	141.7	85%	0.848	79%	0.793	S	S	*	*				-171.4	159.5	108.1	-91.2	171.4	0	0	0	110.2
26	P	56	Low	49.7	Very low	100 Å²	100	141.4 Å²	141.4	65%	0.649	80%	0.795	S	S	*	*			trans	-118.9	-177.7	-134	36.9	-19.9	0	0	0	114.4
27	L	51.4	Low	49.9	Very low	161 Å²	161	141.3 Å²	141.3	84%	0.843	79%	0.79	S	S	*	*			trans	86.9	95.4	170.9	-48.3	174.1	0	0	0	114.8
28	D	45.3	Very low	49.9	Very low	152 Å²	152	135.2 Å²	135.2	81%	0.813	78%	0.78	S	S	*	*				-164.7	143.5	94.6	-134.5	-87.9	0	0	0	110
29	H	54.7	Low	50.2	Low	180 Å²	180	133.2 Å²	133.2	83%	0.833	77%	0.77	S	S	*	*			trans	-97.3	98.1	-176.3	-176.1	77	0	0	0	108.2
30	E	50.3	Low	50.2	Low	181 Å²	181	137.1 Å²	137.1	85%	0.846	77%	0.771	S	S	*	*			trans	-132.7	104.1	159.6	-76	-157.6	100.1	0	0	110.1
31	E	44	Very low	50.5	Low	166 Å²	166	132.9 Å²	132.9	78%	0.776	76%	0.758	S	S	*	*			trans	39	102.3	147	-154.9	144.5	86.7	0	0	117.8	E33	E31-E33 VanDerWaalsContact C-N 3.29Å; E31-E33 PolarHBondContact O-N 2.8Å
32	A	52.1	Low	50.6	Low	108 Å²	108	134.5 Å²	134.5	89%	0.893	75%	0.753	S	S	*	*			trans	-68	84.8	163.9	0	0	0	0	0	110.4	G34	A32-G34 PolarHBondContact O-N 3.01Å
33	E	45.4	Very low	51.1	Low	178 Å²	178	138.3 Å²	138.3	83%	0.832	75%	0.75	S	S	*	*			trans	-70.9	87.3	157.8	-97.2	-156	98.3	0	0	108.7	E31 K35	E31-E33 VanDerWaalsContact C-N 3.29Å; E31-E33 PolarHBondContact O-N 2.8Å; E33-K35 PolarHBondContact O-N 2.94Å
34	G	49.4	Very low	51.3	Low	68 Å²	68	139.5 Å²	139.5	70%	0.701	74%	0.744	S	S	*	*			trans	-57	106.6	170	0	0	0	0	0	110.5	A32 S36	A32-G34 PolarHBondContact O-N 3.01Å; G34-S36 PolarHBondContact O-N 3.14Å
35	K	50.4	Low	51.5	Low	213 Å²	213	139.2 Å²	139.2	93%	0.926	74%	0.737	S	S	*	*			trans	-66.5	76.2	157.1	-90.5	172.6	173.3	164.6	0	108.9	E33 S37	E33-K35 PolarHBondContact O-N 2.94Å; K35-S37 PolarHBondContact O-N 3.32Å
36	S	49.6	Very low	51.8	Low	104 Å²	104	138.7 Å²	138.7	73%	0.727	73%	0.728	S	S	*	*			trans	-73.6	109	166.5	-172.8	0	0	0	0	107.8	G34 G38	G34-S36 PolarHBondContact O-N 3.14Å; S36-G38 PolarHBondContact O-N 3.25Å
37	S	53.3	Low	51.8	Low	81 Å²	81	135.5 Å²	135.5	57%	0.566	71%	0.713	S	S	*	*			trans	-56.7	123.6	179.8	58.3	0	0	0	0	110.8	K35 F39 H40	K35-S37 PolarHBondContact O-N 3.32Å; S37-F39 PolarHBondContact O-N 3.46Å; S37-H40 PolarHBondContact O-N 3.48Å
38	G	52.9	Low	51.9	Low	62 Å²	62	133 Å²	133	64%	0.639	70%	0.698	S	S	*	*	T	Hydrogen-bonded Turn	trans	-58.4	4.1	177.2	0	0	0	0	0	116.2	S36	S36-G38 PolarHBondContact O-N 3.25Å
39	F	53.9	Low	52	Low	145 Å²	145	133.7 Å²	133.7	64%	0.636	70%	0.696	S	S	*	*	H	α-helix	trans	-72.3	-28.9	171.3	-168.8	-103.9	0	0	0	112.9	S37 W43	S37-F39 PolarHBondContact O-N 3.46Å; F39-W43 HydrophobicContact CE1-CE3 4.37Å; F39-W43 HydrophobicContact CZ-CE3 4.31Å; F39-W43 HydrophobicContact CZ-CZ3 4.27Å
40	H	52	Low	51.8	Low	144 Å²	144	132.7 Å²	132.7	67%	0.667	69%	0.692	S	S	*	*	H	α-helix	trans	-76.6	-30.8	-174.5	-157.5	71.2	0	0	0	113.4	S37	S37-H40 PolarHBondContact O-N 3.48Å
41	L	53.3	Low	51.8	Low	122 Å²	122	132.2 Å²	132.2	64%	0.639	69%	0.686	S	S	*	*	H	α-helix	trans	-76.5	-31.3	-178.4	-67.1	172.1	0	0	0	113	F44 L45	L41-F44 PolarHBondContact O-N 2.89Å; L41-L45 WeakPolarHBondContact O-CG 3.47Å; L41-L45 PolarHBondContact O-N 3.48Å
42	Q	51.4	Low	52	Low	145 Å²	145	129.7 Å²	129.7	68%	0.678	69%	0.686	S	S	*	*	H	α-helix	trans	-69.6	-34.6	-179.2	-171.5	172	77.7	0	0	112.3	K46	Q42-K46 PolarHBondContact O-N 3.23Å
43	W	55.9	Low	51.6	Low	191 Å²	191	135.8 Å²	135.8	72%	0.723	70%	0.702	S	S	*	*	H	α-helix	trans	-71.1	-37.9	175.9	-152	-62	0	0	0	112	F39 K46 G47	F39-W43 HydrophobicContact CE1-CE3 4.37Å; F39-W43 HydrophobicContact CZ-CE3 4.31Å; F39-W43 HydrophobicContact CZ-CZ3 4.27Å; W43-K46 PolarHBondContact O-N 3.3Å; W43-G47 PolarHBondContact O-N 3.08Å; W43-G47 VanDerWaalsContact O-N 3.1Å
44	F	57.5	Low	51.9	Low	138 Å²	138	133.7 Å²	133.7	61%	0.605	70%	0.696	S	S	*	*	H	α-helix	trans	-65.6	-43.2	-179.7	-168.5	-93.6	0	0	0	112.2	L41 G47 Q48	L41-F44 PolarHBondContact O-N 2.89Å; F44-G47 PolarHBondContact O-N 2.89Å; F44-Q48 HydrophobicContact CE1-CG 4.41Å; F44-Q48 PolarHBondContact O-N 3.33Å
45	L	56	Low	52	Low	123 Å²	123	137.1 Å²	137.1	64%	0.644	70%	0.695	S	S	*	*	H	α-helix	trans	-67.2	-38.8	177.9	-66.6	173	0	0	0	112.1	L41 G47 Q48	L41-L45 WeakPolarHBondContact O-CG 3.47Å; L41-L45 PolarHBondContact O-N 3.48Å; L45-G47 VanDerWaalsContact C-N 3.34Å; L45-G47 PolarHBondContact O-N 3.47Å; L45-Q48 PolarHBondContact O-N 3.19Å
46	K	53.9	Low	52.1	Low	151 Å²	151	132.9 Å²	132.9	66%	0.657	68%	0.683	S	S	*	*	H	α-helix	trans	-65.8	-35.4	177.4	-168.6	165.3	-177.5	173.5	0	112.8	Q42 W43 Q48 E49	Q42-K46 PolarHBondContact O-N 3.23Å; W43-K46 PolarHBondContact O-N 3.3Å; K46-Q48 VanDerWaalsContact C-N 3.27Å; K46-Q48 PolarHBondContact O-N 3.34Å; K46-E49 PolarHBondContact O-N 3.2Å
47	G	55	Low	52.2	Low	33 Å²	33	134.6 Å²	134.6	34%	0.34	68%	0.68	S	S	.	*	H	α-helix	trans	-72.7	-12.9	176.5	0	0	0	0	0	115.3	W43 F44 L45	W43-G47 PolarHBondContact O-N 3.08Å; W43-G47 VanDerWaalsContact O-N 3.1Å; F44-G47 PolarHBondContact O-N 2.89Å; L45-G47 VanDerWaalsContact C-N 3.34Å; L45-G47 PolarHBondContact O-N 3.47Å
48	Q	53.3	Low	52.2	Low	109 Å²	109	137.9 Å²	137.9	51%	0.509	69%	0.687	S	S	.	*	H	α-helix	trans	-87.9	-28.2	175.7	-69.5	-71.1	-48.1	0	0	112.3	F44 L45 K46 K51	F44-Q48 HydrophobicContact CE1-CG 4.41Å; F44-Q48 PolarHBondContact O-N 3.33Å; L45-Q48 PolarHBondContact O-N 3.19Å; K46-Q48 VanDerWaalsContact C-N 3.27Å; K46-Q48 PolarHBondContact O-N 3.34Å; Q48-K51 PolarHBondContact O-N 3.25Å
49	E	48.4	Very low	52.1	Low	166 Å²	166	143 Å²	143	78%	0.776	69%	0.69	S	S	*	*	H	α-helix	trans	-71.1	-33.9	179.8	-158.4	172.4	102.8	0	0	112	K46 K51	K46-E49 PolarHBondContact O-N 3.2Å; E49-K51 VanDerWaalsContact C-N 3.27Å; E49-K51 PolarHBondContact O-N 3.35Å
50	E	50.6	Low	52	Low	159 Å²	159	142.9 Å²	142.9	74%	0.743	69%	0.694	S	S	*	*	T	Hydrogen-bonded Turn	trans	-77.4	-4.6	179.1	-69.7	-175.6	92	0	0	114.6
51	K	49.8	Very low	52	Low	170 Å²	170	142.8 Å²	142.8	74%	0.739	70%	0.696	S	S	*	*	T	Hydrogen-bonded Turn	trans	-105.2	3.8	177.9	-75.5	-174.1	177.8	-177.6	0	114.4	Q48 E49	Q48-K51 PolarHBondContact O-N 3.25Å; E49-K51 VanDerWaalsContact C-N 3.27Å; E49-K51 PolarHBondContact O-N 3.35Å
52	C	47.6	Very low	51.9	Low	113 Å²	113	144.5 Å²	144.5	76%	0.764	70%	0.701	S	S	*	*			trans	-107.3	40.8	175.3	-73.8	0	0	0	0	112.5
53	L	43.3	Very low	51.9	Low	236 Å²	236	144.5 Å²	144.5	100%	1.236	70%	0.703	S	S	*	*			trans	-120	0	156.7	-81.9	169	0	0	0	109.1

Retrieved 53 of 53 residues in 27.3 ms (Link to these results)

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