A0A087WRY4_MOUSE Loading...

NADH:ubiquinone oxidoreductase core subunit S1

AlphaFold DB , UniProt , Accession A0A087WRY4, Species MOUSE (Mus musculus, Mouse), Gene Ndufs1, Length 19 aa.

						>A0A087WRY4_MOUSE|A0A087WRY4|Ndufs1
MLRIPIKRALIGLSNSPKG
					

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(Predicted Aligned Error values between residue pairs)

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Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	54.5	Low	68.5	Low	237 Å²	237	143.8 Å²	143.8	100%	1.167	70%	0.696	S	S	*	*				0	75.9	0	-173.7	163.9	109.2	0	0	109.2
2	L	65.5	Low	68.1	Low	164 Å²	164	136.4 Å²	136.4	86%	0.859	69%	0.685	S	S	*	*			trans	-141.3	46.3	174.4	-68.8	175	0	0	0	108.9	I4	L2-I4 PolarHBondContact O-N 3.45Å
3	R	72.8	Confident	67.7	Low	246 Å²	246	136.4 Å²	136.4	93%	0.928	69%	0.687	S	S	*	*			trans	-95.2	79.7	170.2	-66.9	-178.9	-177.6	170	0.2	106.5	P5	R3-P5 VanDerWaalsContact O-CD 3.23Å; R3-P5 WeakPolarHBondContact O-CD 3.23Å
4	I	74.3	Confident	67.5	Low	122 Å²	122	133.4 Å²	133.4	63%	0.626	69%	0.685	S	S	*	*			trans	-70	115.9	173.7	-59.7	167	0	0	0	105.7	L2 I6	L2-I4 PolarHBondContact O-N 3.45Å; I4-I6 PolarHBondContact O-N 3.25Å
5	P	71.2	Confident	67.1	Low	76 Å²	76	132.5 Å²	132.5	49%	0.494	68%	0.682	S	S	.	*			trans	-63.5	128.2	175.9	22.7	-26.7	0	0	0	107.8	R3 K7 R8	R3-P5 VanDerWaalsContact O-CD 3.23Å; R3-P5 WeakPolarHBondContact O-CD 3.23Å; P5-K7 PolarHBondContact O-N 3.07Å; P5-R8 HydrophobicContact CG-CB 4.07Å; P5-R8 WeakPolarHBondContact O-CA 3.48Å; P5-R8 WeakPolarHBondContact O-CB 3.42Å; P5-R8 PolarHBondContact O-N 3.03Å
6	I	72.6	Confident	66.8	Low	132 Å²	132	129.7 Å²	129.7	68%	0.677	68%	0.678	S	S	*	*	H	α-helix	trans	-52.5	-32.5	-178.8	-62.7	167.1	0	0	0	110.7	I4 R8 A9 L10	I4-I6 PolarHBondContact O-N 3.25Å; I6-R8 PolarHBondContact O-N 2.9Å; I6-A9 PolarHBondContact O-N 3.37Å; I6-L10 HydrophobicContact CG2-CG 4.02Å; I6-L10 PolarHBondContact O-N 2.77Å; I6-L10 WeakPolarHBondContact O-CG 3.35Å; I6-L10 HydrophobicContact CG2-CD1 3.83Å
7	K	69.7	Low	66.5	Low	161 Å²	161	128.9 Å²	128.9	70%	0.7	68%	0.683	S	S	*	*	H	α-helix	trans	-50.2	-42.7	171.3	-162.6	-178	-173.8	-171.1	0	112.7	P5 L10 I11	P5-K7 PolarHBondContact O-N 3.07Å; K7-L10 PolarHBondContact O-N 3.16Å; K7-I11 HydrophobicContact CG-CD1 4.03Å; K7-I11 VanDerWaalsContact O-CD1 3.27Å; K7-I11 WeakPolarHBondContact O-CD1 3.14Å; K7-I11 WeakPolarHBondContact O-CG1 3.27Å; K7-I11 PolarHBondContact O-N 3.38Å
8	R	66.8	Low	66.6	Low	196 Å²	196	133.3 Å²	133.3	74%	0.74	70%	0.695	S	S	*	*	H	α-helix	trans	-72.7	-31.5	-179.5	-153	177.5	-170.3	176.2	2.1	112.5	P5 I6	P5-R8 HydrophobicContact CG-CB 4.07Å; P5-R8 WeakPolarHBondContact O-CA 3.48Å; P5-R8 WeakPolarHBondContact O-CB 3.42Å; P5-R8 PolarHBondContact O-N 3.03Å; I6-R8 PolarHBondContact O-N 2.9Å
9	A	67.4	Low	65.9	Low	59 Å²	59	133.8 Å²	133.8	49%	0.488	74%	0.736	S	S	.	*	H	α-helix	trans	-72	-41	172.6	0	0	0	0	0	111.9	I6 G12 L13	I6-A9 PolarHBondContact O-N 3.37Å; A9-G12 PolarHBondContact O-N 3.47Å; A9-L13 VanDerWaalsContact O-N 3.16Å; A9-L13 PolarHBondContact O-N 3.32Å
10	L	69.6	Low	65.9	Low	100 Å²	100	133.8 Å²	133.8	52%	0.524	74%	0.736	S	S	.	*	H	α-helix	trans	-68.4	-36.9	178.8	-69.4	174.6	0	0	0	112.9	I6 K7 G12 L13 S14	I6-L10 HydrophobicContact CG2-CG 4.02Å; I6-L10 PolarHBondContact O-N 2.77Å; I6-L10 WeakPolarHBondContact O-CG 3.35Å; I6-L10 HydrophobicContact CG2-CD1 3.83Å; K7-L10 PolarHBondContact O-N 3.16Å; L10-G12 VanDerWaalsContact C-N 3.26Å; L10-G12 PolarHBondContact O-N 3.24Å; L10-L13 PolarHBondContact O-N 2.91Å; L10-L13 VanDerWaalsContact O-N 3.1Å; L10-S14 PolarHBondContact O-N 3.1Å; L10-S14 PolarHBondContact O-OG 2.8Å
11	I	68.9	Low	65.9	Low	89 Å²	89	133.8 Å²	133.8	46%	0.456	74%	0.736	S	S	.	*	H	α-helix	trans	-61.4	-35.6	175.4	-70	159.8	0	0	0	111.2	K7 S14 N15	K7-I11 HydrophobicContact CG-CD1 4.03Å; K7-I11 VanDerWaalsContact O-CD1 3.27Å; K7-I11 WeakPolarHBondContact O-CD1 3.14Å; K7-I11 WeakPolarHBondContact O-CG1 3.27Å; K7-I11 PolarHBondContact O-N 3.38Å; I11-S14 PolarHBondContact O-OG 3.03Å; I11-N15 PolarHBondContact O-ND2 3.23Å
12	G	64.2	Low	66.6	Low	55 Å²	55	128.1 Å²	128.1	57%	0.567	71%	0.712	S	S	*	*	H	α-helix	trans	-71.7	-34.1	173.8	0	0	0	0	0	113	A9 L10	A9-G12 PolarHBondContact O-N 3.47Å; L10-G12 VanDerWaalsContact C-N 3.26Å; L10-G12 PolarHBondContact O-N 3.24Å
13	L	62.9	Low	66.6	Low	136 Å²	136	125.9 Å²	125.9	71%	0.712	70%	0.703	S	S	*	*	H	α-helix	trans	-73	-38.5	179.8	-147.2	86.1	0	0	0	112.6	A9 L10 N15 S16	A9-L13 VanDerWaalsContact O-N 3.16Å; A9-L13 PolarHBondContact O-N 3.32Å; L10-L13 PolarHBondContact O-N 2.91Å; L10-L13 VanDerWaalsContact O-N 3.1Å; L13-N15 VanDerWaalsContact C-N 3.25Å; L13-N15 PolarHBondContact O-N 3.36Å; L13-S16 WeakPolarHBondContact O-CB 3.23Å; L13-S16 PolarHBondContact O-N 3.36Å
14	S	64.4	Low	66.2	Low	94 Å²	94	118.4 Å²	118.4	66%	0.657	69%	0.689	S	S	*	*	T	Hydrogen-bonded Turn	trans	-74.9	-11.4	-179.3	67.3	0	0	0	0	114.2	L10 I11	L10-S14 PolarHBondContact O-N 3.1Å; L10-S14 PolarHBondContact O-OG 2.8Å; I11-S14 PolarHBondContact O-OG 3.03Å
15	N	62	Low	65.7	Low	120 Å²	120	118.2 Å²	118.2	64%	0.642	69%	0.694	S	S	*	*	T	Hydrogen-bonded Turn	trans	-94.6	9.2	172.5	-77.5	-69.7	0	0	0	112.6	I11 L13 P17	I11-N15 PolarHBondContact O-ND2 3.23Å; L13-N15 VanDerWaalsContact C-N 3.25Å; L13-N15 PolarHBondContact O-N 3.36Å; N15-P17 VanDerWaalsContact O-CD 3.23Å; N15-P17 WeakPolarHBondContact O-CD 3.48Å; N15-P17 VanDerWaalsContact O-N 3.15Å
16	S	62.7	Low	65.3	Low	88 Å²	88	121.2 Å²	121.2	62%	0.615	71%	0.708	S	S	*	*	S	Bend	trans	-65.5	112.6	163.5	-159.5	0	0	0	0	106.7	L13 K18	L13-S16 WeakPolarHBondContact O-CB 3.23Å; L13-S16 PolarHBondContact O-N 3.36Å; S16-K18 PolarHBondContact O-N 2.87Å
17	P	61.6	Low	64.8	Low	117 Å²	117	120.4 Å²	120.4	76%	0.76	71%	0.71	S	S	*	*			trans	-60.7	115.9	178	26.8	-30.5	0	0	0	105.4	N15 G19	N15-P17 VanDerWaalsContact O-CD 3.23Å; N15-P17 WeakPolarHBondContact O-CD 3.48Å; N15-P17 VanDerWaalsContact O-N 3.15Å; P17-G19 VanDerWaalsContact C-N 3.32Å; P17-G19 PolarHBondContact O-N 2.95Å
18	K	67.6	Low	64.4	Low	207 Å²	207	117 Å²	117	90%	0.9	71%	0.711	S	S	*	*			trans	-56.3	105.3	169	-130.6	174.8	177.2	179.4	0	105.2	S16	S16-K18 PolarHBondContact O-N 2.87Å
19	G	54.2	Low	64.1	Low	143 Å²	143	109.8 Å²	109.8	100%	1.474	71%	0.709	S	S	*	*			trans	-56	0	154.3	0	0	0	0	0	109	P17	P17-G19 VanDerWaalsContact C-N 3.32Å; P17-G19 PolarHBondContact O-N 2.95Å

Retrieved 19 of 19 residues in 14.8 ms (Link to these results)

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