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Topoisomerase (DNA) II binding protein 1

AlphaFold DB , UniProt , Accession A0A087WS20, Species MOUSE (Mus musculus, Mouse), Gene Topbp1, Length 66 aa.

						>A0A087WS20_MOUSE|A0A087WS20|Topbp1
QAPAVASPLAKPPVAPQPADKIETQEETHRKVKKQYVFQMSSLNSQERIDYCRLIKDLGRRLRVGK
					

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(Predicted Aligned Error values between residue pairs)

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Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	Q	53.5	Low	67.6	Low	256 Å²	256	133 Å²	133	100%	1.196	82%	0.822	S	S	*	*				0	118.9	0	-173.8	176.4	-21.3	0	0	107.3
2	A	69.5	Low	68	Low	90 Å²	90	130.8 Å²	130.8	74%	0.744	81%	0.812	S	S	*	*			trans	-104	140.8	-178.5	0	0	0	0	0	109.7	A4	A2-A4 PolarHBondContact O-N 3.07Å
3	P	64.8	Low	68.2	Low	117 Å²	117	130.5 Å²	130.5	76%	0.76	81%	0.813	S	S	*	*			trans	-71.5	124.4	176.1	29	-29.7	0	0	0	108.8	V5	P3-V5 PolarHBondContact O-N 3.36Å
4	A	70.8	Confident	68.4	Low	105 Å²	105	130.4 Å²	130.4	87%	0.868	81%	0.81	S	S	*	*			trans	-68.5	103.4	173.3	0	0	0	0	0	108.9	A2 A6	A2-A4 PolarHBondContact O-N 3.07Å; A4-A6 PolarHBondContact O-N 3.44Å
5	V	66.1	Low	68.8	Low	130 Å²	130	126.7 Å²	126.7	79%	0.788	80%	0.798	S	S	*	*			trans	-74.4	109.4	172	170.5	0	0	0	0	107.7	P3 S7	P3-V5 PolarHBondContact O-N 3.36Å; V5-S7 PolarHBondContact O-N 3.24Å
6	A	71.7	Confident	68.9	Low	93 Å²	93	126.7 Å²	126.7	77%	0.769	80%	0.799	S	S	*	*	P	Polyproline II helix	trans	-69.9	121.3	169.6	0	0	0	0	0	108.8	A4	A4-A6 PolarHBondContact O-N 3.44Å
7	S	69.3	Low	68.8	Low	99 Å²	99	129.2 Å²	129.2	69%	0.692	80%	0.799	S	S	*	*	P	Polyproline II helix	trans	-52.4	143.1	171.6	-58.3	0	0	0	0	110.3	V5 L9	V5-S7 PolarHBondContact O-N 3.24Å; S7-L9 PolarHBondContact O-N 3.29Å; S7-L9 VanDerWaalsContact O-N 3.08Å
8	P	67.9	Low	68.6	Low	123 Å²	123	128.1 Å²	128.1	80%	0.799	79%	0.794	S	S	*	*	P	Polyproline II helix	trans	-59	121.8	171.3	14.8	-16.3	0	0	0	108.4	A10	P8-A10 PolarHBondContact O-N 2.78Å
9	L	66.4	Low	68.2	Low	178 Å²	178	125.1 Å²	125.1	93%	0.932	78%	0.783	S	S	*	*			trans	-67	59.7	168.8	-86.7	153.3	0	0	0	109.3	S7 K11	S7-L9 PolarHBondContact O-N 3.29Å; S7-L9 VanDerWaalsContact O-N 3.08Å; L9-K11 PolarHBondContact O-N 2.74Å; L9-K11 VanDerWaalsContact O-N 3.13Å
10	A	72	Confident	67.7	Low	81 Å²	81	126.1 Å²	126.1	67%	0.669	78%	0.783	S	S	*	*			trans	-65.8	113.1	168.4	0	0	0	0	0	106.6	P8	P8-A10 PolarHBondContact O-N 2.78Å
11	K	71.9	Confident	67.1	Low	191 Å²	191	127.8 Å²	127.8	83%	0.83	78%	0.779	S	S	*	*	P	Polyproline II helix	trans	-57.1	122.5	167.7	-70.3	177.5	-81.2	-169.9	0	106.3	L9	L9-K11 PolarHBondContact O-N 2.74Å; L9-K11 VanDerWaalsContact O-N 3.13Å
12	P	71.6	Confident	67.2	Low	107 Å²	107	122.9 Å²	122.9	70%	0.695	76%	0.759	S	S	*	*	P	Polyproline II helix	trans	-54.4	141.2	174.4	22.9	-31.4	0	0	0	107.6	V14	P12-V14 PolarHBondContact O-N 2.65Å
13	P	70.9	Confident	66.1	Low	127 Å²	127	124.7 Å²	124.7	83%	0.825	75%	0.752	S	S	*	*	P	Polyproline II helix	trans	-51.6	117.4	178.6	20.9	-31	0	0	0	107.4	A15	P13-A15 PolarHBondContact O-N 3.48Å; P13-A15 VanDerWaalsContact O-N 3.12Å
14	V	71.5	Confident	65.4	Low	128 Å²	128	123.7 Å²	123.7	78%	0.776	74%	0.744	S	S	*	*	P	Polyproline II helix	trans	-57.8	123.7	-178.8	107.5	0	0	0	0	105.6	P12	P12-V14 PolarHBondContact O-N 2.65Å
15	A	73.9	Confident	64.5	Low	76 Å²	76	126.2 Å²	126.2	63%	0.628	74%	0.738	S	S	*	*	P	Polyproline II helix	trans	-50.3	132.6	177.1	0	0	0	0	0	107.4	P13 Q17	P13-A15 PolarHBondContact O-N 3.48Å; P13-A15 VanDerWaalsContact O-N 3.12Å; A15-Q17 PolarHBondContact O-N 3.44Å
16	P	71	Confident	63.8	Low	126 Å²	126	126.8 Å²	126.8	82%	0.818	73%	0.732	S	S	*	*	P	Polyproline II helix	trans	-52.2	117.8	178.1	18.9	-28.8	0	0	0	106.8
17	Q	67.6	Low	62.6	Low	169 Å²	169	130.3 Å²	130.3	79%	0.79	73%	0.733	S	S	*	*	P	Polyproline II helix	trans	-54.3	136.6	-178	-64.9	-168.4	-81.9	0	0	107	A15 A19	A15-Q17 PolarHBondContact O-N 3.44Å; Q17-A19 PolarHBondContact O-N 3.39Å
18	P	65.1	Low	61.7	Low	109 Å²	109	129 Å²	129	71%	0.708	72%	0.721	S	S	*	*			trans	-52.9	116	172.2	23	-30.7	0	0	0	105.5	D20	P18-D20 VanDerWaalsContact C-N 3.31Å; P18-D20 PolarHBondContact O-N 3.38Å
19	A	61.3	Low	61	Low	72 Å²	72	127.6 Å²	127.6	60%	0.595	70%	0.703	S	S	*	*			trans	-63.2	105.4	179.7	0	0	0	0	0	105	Q17 K21	Q17-A19 PolarHBondContact O-N 3.39Å; A19-K21 HydrophobicContact CB-CD 4.42Å; A19-K21 HydrophobicContact CB-CG 3.78Å; A19-K21 PolarHBondContact O-N 2.92Å
20	D	56.9	Low	60.2	Low	145 Å²	145	129.6 Å²	129.6	78%	0.775	70%	0.699	S	S	*	*			trans	-64.4	69.7	164.8	-73.5	-55.9	0	0	0	106.9	P18 I22	P18-D20 VanDerWaalsContact C-N 3.31Å; P18-D20 PolarHBondContact O-N 3.38Å; D20-I22 PolarHBondContact O-N 2.77Å
21	K	55.6	Low	59.2	Low	161 Å²	161	135.4 Å²	135.4	70%	0.7	71%	0.709	S	S	*	*			trans	-78	66.9	168.3	-63.2	-167.2	179.8	-161.1	0	106.6	A19 E23	A19-K21 HydrophobicContact CB-CD 4.42Å; A19-K21 HydrophobicContact CB-CG 3.78Å; A19-K21 PolarHBondContact O-N 2.92Å; K21-E23 PolarHBondContact O-N 3.12Å
22	I	55.4	Low	58.4	Low	153 Å²	153	130.2 Å²	130.2	79%	0.785	69%	0.693	S	S	*	*			trans	-77.4	59.6	145.4	-47.2	179	0	0	0	105	D20 T24	D20-I22 PolarHBondContact O-N 2.77Å; I22-T24 PolarHBondContact O-N 3.13Å
23	E	45.9	Very low	57.9	Low	128 Å²	128	134.6 Å²	134.6	60%	0.598	70%	0.701	S	S	*	*			trans	-72.7	108.9	166.1	-170.4	171	99.8	0	0	103.8	K21 Q25	K21-E23 PolarHBondContact O-N 3.12Å; E23-Q25 PolarHBondContact O-N 2.74Å
24	T	50.8	Low	57.5	Low	97 Å²	97	135.3 Å²	135.3	60%	0.595	69%	0.691	S	S	*	*			trans	-33.3	100.5	176.1	-44.1	0	0	0	0	109.8	I22 E26 E27	I22-T24 PolarHBondContact O-N 3.13Å; T24-E26 HydrophobicContact CG2-CB 4.05Å; T24-E26 PolarHBondContact O-N 3.25Å; T24-E27 PolarHBondContact O-N 3.35Å
25	Q	52.4	Low	57	Low	158 Å²	158	136.8 Å²	136.8	74%	0.738	69%	0.69	S	S	*	*	T	Hydrogen-bonded Turn	trans	-55	-11.8	-178.1	-77	-176.7	-35.4	0	0	112.6	E23 H29	E23-Q25 PolarHBondContact O-N 2.74Å; Q25-H29 PolarHBondContact O-CD2 3.08Å; Q25-H29 PolarHBondContact O-CE1 3.31Å; Q25-H29 PolarHBondContact O-ND1 3.38Å; Q25-H29 PolarHBondContact O-NE2 3.37Å
26	E	50.3	Low	56.7	Low	142 Å²	142	142 Å²	142	66%	0.664	69%	0.694	S	S	*	*	T	Hydrogen-bonded Turn	trans	-74.9	-31.2	-179.3	-158.5	173.4	102.9	0	0	114.6	T24	T24-E26 HydrophobicContact CG2-CB 4.05Å; T24-E26 PolarHBondContact O-N 3.25Å
27	E	47.4	Very low	56.7	Low	166 Å²	166	141.2 Å²	141.2	78%	0.776	69%	0.687	S	S	*	*	T	Hydrogen-bonded Turn	trans	-83.9	-41.3	-172	-164.4	168.8	117.2	0	0	112.5	T24 H29 R30	T24-E27 PolarHBondContact O-N 3.35Å; E27-H29 PolarHBondContact O-N 3.23Å; E27-R30 PolarHBondContact O-N 2.96Å
28	T	49.6	Very low	56.9	Low	73 Å²	73	136.6 Å²	136.6	45%	0.448	66%	0.664	S	S	.	*	G	3₁₀ helix	trans	-71.1	-14.9	177.9	-36.2	0	0	0	0	112.7	R30	T28-R30 VanDerWaalsContact C-N 3.28Å; T28-R30 PolarHBondContact O-N 3.18Å
29	H	52.4	Low	57.6	Low	92 Å²	92	137.6 Å²	137.6	43%	0.426	66%	0.659	S	S	.	*	G	3₁₀ helix	trans	-71.2	-14.5	177.8	-83.7	-169.8	0	0	0	114.9	Q25 E27	Q25-H29 PolarHBondContact O-CD2 3.08Å; Q25-H29 PolarHBondContact O-CE1 3.31Å; Q25-H29 PolarHBondContact O-ND1 3.38Å; Q25-H29 PolarHBondContact O-NE2 3.37Å; E27-H29 PolarHBondContact O-N 3.23Å
30	R	51	Low	58.3	Low	220 Å²	220	138.3 Å²	138.3	83%	0.83	65%	0.652	S	S	*	*	G	3₁₀ helix	trans	-89	-18.9	-175	-66.2	-169.6	-177.9	-163.4	2.3	114.5	E27 T28	E27-R30 PolarHBondContact O-N 2.96Å; T28-R30 VanDerWaalsContact C-N 3.28Å; T28-R30 PolarHBondContact O-N 3.18Å
31	K	51	Low	59.1	Low	203 Å²	203	135.5 Å²	135.5	88%	0.883	64%	0.643	S	S	*	*	T	Hydrogen-bonded Turn	trans	-121	-25.4	-172	-139.5	174.3	-174.4	-178.4	0	115.3
32	V	55.4	Low	60.3	Low	82 Å²	82	131.9 Å²	131.9	50%	0.497	64%	0.638	S	S	.	*	S	Bend	trans	-84	112.9	162.3	-177.8	0	0	0	0	105.2	K34	V32-K34 VanDerWaalsContact C-N 3.28Å; V32-K34 PolarHBondContact O-N 3.18Å
33	K	59.8	Low	61.8	Low	199 Å²	199	125.5 Å²	125.5	87%	0.865	61%	0.606	S	S	*	*			trans	-47.4	104	162.6	-70.7	177.9	179.9	177.8	0	105	Q35	K33-Q35 VanDerWaalsContact C-N 3.28Å; K33-Q35 WeakPolarHBondContact O-CA 3.5Å; K33-Q35 PolarHBondContact O-N 2.8Å
34	K	63	Low	63.9	Low	143 Å²	143	123.5 Å²	123.5	62%	0.622	60%	0.599	S	S	*	*			trans	-43.3	98.1	-166.6	-68.4	173.1	-178.6	172.6	0	107.9	V32 Y36	V32-K34 VanDerWaalsContact C-N 3.28Å; V32-K34 PolarHBondContact O-N 3.18Å; K34-Y36 PolarHBondContact O-N 2.83Å
35	Q	60.3	Low	65.7	Low	159 Å²	159	123.4 Å²	123.4	74%	0.743	60%	0.602	S	S	*	*			trans	-77.2	89.1	179	-170.3	173.9	5.3	0	0	101.5	K33 V37	K33-Q35 VanDerWaalsContact C-N 3.28Å; K33-Q35 WeakPolarHBondContact O-CA 3.5Å; K33-Q35 PolarHBondContact O-N 2.8Å; Q35-V37 HydrophobicContact CB-CG2 4.48Å; Q35-V37 HydrophobicContact CG-CG2 3.94Å; Q35-V37 PolarHBondContact O-N 3.05Å
36	Y	68	Low	67.6	Low	185 Å²	185	120.8 Å²	120.8	73%	0.725	59%	0.59	S	S	*	*			trans	-69.8	86.2	-177.8	-172.5	-98.9	0	0	0	106.1	K34 F38	K34-Y36 PolarHBondContact O-N 2.83Å; Y36-F38 HydrophobicContact CD1-CB 4.36Å; Y36-F38 HydrophobicContact CE1-CB 4.05Å; Y36-F38 AromaticContact CE1-CD2 3.65Å; Y36-F38 HydrophobicContact CE1-CD2 3.65Å; Y36-F38 HydrophobicContact CE1-CG 4.26Å; Y36-F38 AromaticContact CZ-CD2 3.91Å; Y36-F38 PolarHBondContact O-N 2.91Å
37	V	71	Confident	69.4	Low	109 Å²	109	118 Å²	118	66%	0.661	58%	0.577	S	S	*	*			trans	-82.9	101.5	177	-178.7	0	0	0	0	106.1	Q35	Q35-V37 HydrophobicContact CB-CG2 4.48Å; Q35-V37 HydrophobicContact CG-CG2 3.94Å; Q35-V37 PolarHBondContact O-N 3.05Å
38	F	71.8	Confident	71.4	Confident	73 Å²	73	115.3 Å²	115.3	32%	0.32	56%	0.56	S	S	.	*			trans	-87.3	123.7	173.9	-161.3	-95.9	0	0	0	109.3	Y36 M40 L43	Y36-F38 HydrophobicContact CD1-CB 4.36Å; Y36-F38 HydrophobicContact CE1-CB 4.05Å; Y36-F38 AromaticContact CE1-CD2 3.65Å; Y36-F38 HydrophobicContact CE1-CD2 3.65Å; Y36-F38 HydrophobicContact CE1-CG 4.26Å; Y36-F38 AromaticContact CZ-CD2 3.91Å; Y36-F38 PolarHBondContact O-N 2.91Å; F38-M40 PolarHBondContact O-N 2.96Å; F38-L43 HydrophobicContact CE1-CD1 3.87Å; F38-L43 HydrophobicContact CE1-CD2 3.57Å; F38-L43 HydrophobicContact CE1-CG 3.63Å; F38-L43 HydrophobicContact CZ-CD2 3.78Å; F38-L43 HydrophobicContact CZ-CG 4.34Å
39	Q	79.2	Confident	73.5	Confident	129 Å²	129	116.1 Å²	116.1	60%	0.603	56%	0.561	S	S	*	*			trans	-81.3	119.3	176.9	-63.2	-172.8	10.6	0	0	109.6	S41 S42	Q39-S41 PolarHBondContact O-N 3.47Å; Q39-S42 WeakPolarHBondContact O-CB 3.47Å; Q39-S42 PolarHBondContact O-N 3.49Å; Q39-S42 VanDerWaalsContact O-N 3.16Å
40	M	76.2	Confident	75.3	Confident	88 Å²	88	114.9 Å²	114.9	43%	0.433	56%	0.557	S	S	.	*	G	3₁₀ helix	trans	-66.4	-19.2	-179.6	-67.6	-61.3	-66.8	0	0	113.5	F38 S42 L43 R48 Y51	F38-M40 PolarHBondContact O-N 2.96Å; M40-S42 PolarHBondContact O-N 3.26Å; M40-L43 HydrophobicContact CE-CD1 4.17Å; M40-L43 PolarHBondContact O-N 3.05Å; M40-L43 HydrophobicContact SD-CD1 4.28Å; M40-R48 HydrophobicContact CE-CB 4.49Å; M40-R48 HydrophobicContact CE-CG 4.09Å; M40-R48 PolarHBondContact O-NE 2.96Å; M40-R48 VanDerWaalsContact O-NE 3.13Å; M40-R48 PolarHBondContact O-NH2 3.39Å; M40-Y51 HydrophobicContact CE-CD1 4.14Å; M40-Y51 HydrophobicContact SD-CD1 4.09Å; M40-Y51 HydrophobicContact SD-CE1 3.98Å
41	S	75	Confident	77.1	Confident	86 Å²	86	108.4 Å²	108.4	60%	0.601	53%	0.533	S	S	*	.	G	3₁₀ helix	trans	-65	-26.2	174.6	45.8	0	0	0	0	112.9	Q39 L43	Q39-S41 PolarHBondContact O-N 3.47Å; S41-L43 PolarHBondContact O-N 3.29Å
42	S	80.4	Confident	78.9	Confident	84 Å²	84	101.4 Å²	101.4	59%	0.587	51%	0.509	S	S	*	.	G	3₁₀ helix	trans	-71.7	-16.5	177.1	-57.1	0	0	0	0	113.3	Q39 M40	Q39-S42 WeakPolarHBondContact O-CB 3.47Å; Q39-S42 PolarHBondContact O-N 3.49Å; Q39-S42 VanDerWaalsContact O-N 3.16Å; M40-S42 PolarHBondContact O-N 3.26Å
43	L	87.1	Confident	80.6	Confident	20 Å²	20	103.9 Å²	103.9	11%	0.105	51%	0.51	C	S	.	.	S	Bend	trans	-93.3	137.5	178.2	-58.5	-177.8	0	0	0	111.1	F38 M40 S41 E47 R48 Y51	F38-L43 HydrophobicContact CE1-CD1 3.87Å; F38-L43 HydrophobicContact CE1-CD2 3.57Å; F38-L43 HydrophobicContact CE1-CG 3.63Å; F38-L43 HydrophobicContact CZ-CD2 3.78Å; F38-L43 HydrophobicContact CZ-CG 4.34Å; M40-L43 HydrophobicContact CE-CD1 4.17Å; M40-L43 PolarHBondContact O-N 3.05Å; M40-L43 HydrophobicContact SD-CD1 4.28Å; S41-L43 PolarHBondContact O-N 3.29Å; L43-E47 HydrophobicContact CB-CB 3.91Å; L43-E47 HydrophobicContact CD2-CB 3.99Å; L43-E47 HydrophobicContact CG-CB 4.35Å; L43-R48 HydrophobicContact CB-CG 3.61Å; L43-R48 HydrophobicContact CD1-CG 4.21Å; L43-R48 PolarHBondContact O-NE 3.48Å; L43-R48 PolarHBondContact O-NH2 3.11Å; L43-R48 VanDerWaalsContact O-NH2 3.17Å; L43-Y51 HydrophobicContact CD1-CD1 4.4Å; L43-Y51 HydrophobicContact CD1-CG 4.19Å
44	N	90.1	Very high	82	Confident	85 Å²	85	98.8 Å²	98.8	46%	0.455	49%	0.491	S	S	.	.			trans	-71.6	168.6	165.2	77.8	56.1	0	0	0	111.4	Q46 E47 R48	N44-Q46 VanDerWaalsContact C-N 3.26Å; N44-Q46 PolarHBondContact O-N 2.68Å; N44-Q46 WeakPolarHBondContact OD1-CA 3.44Å; N44-Q46 VanDerWaalsContact OD1-CB 3.29Å; N44-Q46 WeakPolarHBondContact OD1-CB 3.43Å; N44-Q46 PolarHBondContact OD1-N 2.82Å; N44-E47 PolarHBondContact N-OE2 2.96Å; N44-E47 VanDerWaalsContact ND2-CG 3.34Å; N44-E47 WeakPolarHBondContact ND2-CG 3.34Å; N44-E47 PolarHBondContact ND2-OE2 3.45Å; N44-E47 PolarHBondContact O-N 2.87Å; N44-E47 PolarHBondContact OD1-N 3.29Å; N44-R48 WeakPolarHBondContact O-CG 3.46Å; N44-R48 PolarHBondContact O-N 3.4Å
45	S	87.5	Confident	83.2	Confident	95 Å²	95	96.1 Å²	96.1	66%	0.664	48%	0.483	S	S	*	.	H	α-helix	trans	-56.2	-36.7	-176	-58.7	0	0	0	0	113.8	I49	S45-I49 WeakPolarHBondContact O-CG1 3.47Å; S45-I49 PolarHBondContact O-N 3.35Å
46	Q	92.1	Very high	84.5	Confident	103 Å²	103	94.8 Å²	94.8	48%	0.481	48%	0.475	S	S	.	.	H	α-helix	trans	-72.8	-46	178.9	-172.8	57.8	59.5	0	0	111.3	N44 R48 I49 D50	N44-Q46 VanDerWaalsContact C-N 3.26Å; N44-Q46 PolarHBondContact O-N 2.68Å; N44-Q46 WeakPolarHBondContact OD1-CA 3.44Å; N44-Q46 VanDerWaalsContact OD1-CB 3.29Å; N44-Q46 WeakPolarHBondContact OD1-CB 3.43Å; N44-Q46 PolarHBondContact OD1-N 2.82Å; Q46-R48 PolarHBondContact O-N 2.82Å; Q46-I49 WeakPolarHBondContact O-CB 3.24Å; Q46-I49 PolarHBondContact O-N 3.5Å; Q46-D50 PolarHBondContact NE2-OD1 3.03Å; Q46-D50 VanDerWaalsContact O-CG 3.27Å; Q46-D50 PolarHBondContact O-N 2.91Å
47	E	88.8	Confident	85.5	Confident	84 Å²	84	90.8 Å²	90.8	39%	0.393	47%	0.466	S	S	.	.	H	α-helix	trans	-60.9	-33.6	177.9	-69	172.9	124.5	0	0	112.1	L43 N44 D50 Y51	L43-E47 HydrophobicContact CB-CB 3.91Å; L43-E47 HydrophobicContact CD2-CB 3.99Å; L43-E47 HydrophobicContact CG-CB 4.35Å; N44-E47 PolarHBondContact N-OE2 2.96Å; N44-E47 VanDerWaalsContact ND2-CG 3.34Å; N44-E47 WeakPolarHBondContact ND2-CG 3.34Å; N44-E47 PolarHBondContact ND2-OE2 3.45Å; N44-E47 PolarHBondContact O-N 2.87Å; N44-E47 PolarHBondContact OD1-N 3.29Å; E47-D50 PolarHBondContact O-N 3.49Å; E47-Y51 WeakPolarHBondContact O-CB 3.44Å; E47-Y51 PolarHBondContact O-N 3.38Å
48	R	90.2	Very high	86.3	Confident	109 Å²	109	90.1 Å²	90.1	41%	0.411	46%	0.458	S	S	.	.	H	α-helix	trans	-63.9	-40.5	174.2	-69.6	178.8	-169	177.1	6.5	112.3	M40 L43 N44 Q46 C52	M40-R48 HydrophobicContact CE-CB 4.49Å; M40-R48 HydrophobicContact CE-CG 4.09Å; M40-R48 PolarHBondContact O-NE 2.96Å; M40-R48 VanDerWaalsContact O-NE 3.13Å; M40-R48 PolarHBondContact O-NH2 3.39Å; L43-R48 HydrophobicContact CB-CG 3.61Å; L43-R48 HydrophobicContact CD1-CG 4.21Å; L43-R48 PolarHBondContact O-NE 3.48Å; L43-R48 PolarHBondContact O-NH2 3.11Å; L43-R48 VanDerWaalsContact O-NH2 3.17Å; N44-R48 WeakPolarHBondContact O-CG 3.46Å; N44-R48 PolarHBondContact O-N 3.4Å; Q46-R48 PolarHBondContact O-N 2.82Å; R48-C52 VanDerWaalsContact O-CB 3.3Å; R48-C52 WeakPolarHBondContact O-CB 3.44Å; R48-C52 PolarHBondContact O-N 3.05Å
49	I	92.3	Very high	86.7	Confident	91 Å²	91	88.2 Å²	88.2	47%	0.467	46%	0.459	S	S	.	.	H	α-helix	trans	-66.2	-45.7	177.2	-64.7	164.9	0	0	0	109.3	S45 Q46 C52 R53	S45-I49 WeakPolarHBondContact O-CG1 3.47Å; S45-I49 PolarHBondContact O-N 3.35Å; Q46-I49 WeakPolarHBondContact O-CB 3.24Å; Q46-I49 PolarHBondContact O-N 3.5Å; I49-C52 PolarHBondContact O-N 3.24Å; I49-R53 WeakPolarHBondContact O-CG 3.19Å; I49-R53 PolarHBondContact O-N 3.42Å; I49-R53 VanDerWaalsContact O-N 3.09Å
50	D	91.5	Very high	86.4	Confident	66 Å²	66	91.3 Å²	91.3	35%	0.353	47%	0.465	S	S	.	.	H	α-helix	trans	-62	-45.7	179.2	-61.4	-19	0	0	0	111.7	Q46 E47 C52 R53 L54	Q46-D50 PolarHBondContact NE2-OD1 3.03Å; Q46-D50 VanDerWaalsContact O-CG 3.27Å; Q46-D50 PolarHBondContact O-N 2.91Å; E47-D50 PolarHBondContact O-N 3.49Å; D50-C52 PolarHBondContact O-N 2.97Å; D50-R53 WeakPolarHBondContact O-CB 3.3Å; D50-R53 PolarHBondContact O-N 3.21Å; D50-R53 IonicContact OD1-CZ 3.56Å; D50-R53 IonicContact OD1-NE 3.81Å; D50-R53 IonicContact OD1-NH2 2.6Å; D50-R53 PolarHBondContact OD1-NH2 3.31Å; D50-L54 PolarHBondContact O-N 3.47Å
51	Y	89.2	Confident	86.1	Confident	83 Å²	83	96.8 Å²	96.8	33%	0.325	48%	0.481	S	S	.	.	H	α-helix	trans	-62.9	-41	177.1	-176.6	-107	0	0	0	112.6	M40 L43 E47 R53 L54 I55	M40-Y51 HydrophobicContact CE-CD1 4.14Å; M40-Y51 HydrophobicContact SD-CD1 4.09Å; M40-Y51 HydrophobicContact SD-CE1 3.98Å; L43-Y51 HydrophobicContact CD1-CD1 4.4Å; L43-Y51 HydrophobicContact CD1-CG 4.19Å; E47-Y51 WeakPolarHBondContact O-CB 3.44Å; E47-Y51 PolarHBondContact O-N 3.38Å; Y51-R53 VanDerWaalsContact C-N 3.3Å; Y51-R53 PolarHBondContact O-N 3.09Å; Y51-L54 WeakPolarHBondContact O-CB 3.46Å; Y51-L54 PolarHBondContact O-N 3.34Å; Y51-I55 HydrophobicContact CD1-CD1 3.85Å; Y51-I55 HydrophobicContact CE1-CD1 3.24Å; Y51-I55 HydrophobicContact CE1-CG1 4.23Å; Y51-I55 HydrophobicContact CE2-CD1 4.27Å; Y51-I55 HydrophobicContact CE2-CG1 4.5Å; Y51-I55 VanDerWaalsContact CZ-CD1 3.49Å; Y51-I55 PolarHBondContact O-N 3.02Å
52	C	87.4	Confident	85.8	Confident	57 Å²	57	99.8 Å²	99.8	39%	0.385	49%	0.489	S	S	.	.	H	α-helix	trans	-62.1	-38.8	175.7	-176.7	0	0	0	0	111.8	R48 I49 D50 K56	R48-C52 VanDerWaalsContact O-CB 3.3Å; R48-C52 WeakPolarHBondContact O-CB 3.44Å; R48-C52 PolarHBondContact O-N 3.05Å; I49-C52 PolarHBondContact O-N 3.24Å; D50-C52 PolarHBondContact O-N 2.97Å; C52-K56 WeakPolarHBondContact O-CG 3.34Å; C52-K56 PolarHBondContact O-N 3.28Å
53	R	91.6	Very high	85	Confident	134 Å²	134	105.8 Å²	105.8	51%	0.506	50%	0.499	S	S	.	.	H	α-helix	trans	-64.1	-47.2	173.4	-69.4	-172.5	-76.2	-156.3	6.1	111.3	I49 D50 Y51 I55 K56 D57	I49-R53 WeakPolarHBondContact O-CG 3.19Å; I49-R53 PolarHBondContact O-N 3.42Å; I49-R53 VanDerWaalsContact O-N 3.09Å; D50-R53 WeakPolarHBondContact O-CB 3.3Å; D50-R53 PolarHBondContact O-N 3.21Å; D50-R53 IonicContact OD1-CZ 3.56Å; D50-R53 IonicContact OD1-NE 3.81Å; D50-R53 IonicContact OD1-NH2 2.6Å; D50-R53 PolarHBondContact OD1-NH2 3.31Å; Y51-R53 VanDerWaalsContact C-N 3.3Å; Y51-R53 PolarHBondContact O-N 3.09Å; R53-I55 PolarHBondContact O-N 2.84Å; R53-K56 WeakPolarHBondContact O-CB 3.36Å; R53-K56 PolarHBondContact O-N 3.16Å; R53-K56 VanDerWaalsContact O-N 3.11Å; R53-D57 PolarHBondContact O-N 3.21Å
54	L	89.5	Confident	83.8	Confident	91 Å²	91	110.9 Å²	110.9	48%	0.476	53%	0.531	S	S	.	.	H	α-helix	trans	-55.5	-48.8	179.6	179.1	63	0	0	0	112.7	D50 Y51 K56 D57 L58	D50-L54 PolarHBondContact O-N 3.47Å; Y51-L54 WeakPolarHBondContact O-CB 3.46Å; Y51-L54 PolarHBondContact O-N 3.34Å; L54-K56 VanDerWaalsContact C-N 3.31Å; L54-K56 PolarHBondContact O-N 3.42Å; L54-D57 PolarHBondContact O-N 3.04Å; L54-L58 HydrophobicContact CD1-CD1 3.93Å; L54-L58 HydrophobicContact CD1-CG 4.12Å; L54-L58 HydrophobicContact CG-CD1 3.86Å; L54-L58 HydrophobicContact CG-CG 4.44Å; L54-L58 WeakPolarHBondContact O-CB 3.43Å; L54-L58 VanDerWaalsContact O-CG 3.24Å; L54-L58 WeakPolarHBondContact O-CG 3.4Å; L54-L58 PolarHBondContact O-N 3.47Å
55	I	87.9	Confident	82.4	Confident	88 Å²	88	110.4 Å²	110.4	45%	0.451	55%	0.546	S	S	.	.	H	α-helix	trans	-61.8	-40.5	178.6	-68.8	170.2	0	0	0	111.4	Y51 R53 D57 L58 G59	Y51-I55 HydrophobicContact CD1-CD1 3.85Å; Y51-I55 HydrophobicContact CE1-CD1 3.24Å; Y51-I55 HydrophobicContact CE1-CG1 4.23Å; Y51-I55 HydrophobicContact CE2-CD1 4.27Å; Y51-I55 HydrophobicContact CE2-CG1 4.5Å; Y51-I55 VanDerWaalsContact CZ-CD1 3.49Å; Y51-I55 PolarHBondContact O-N 3.02Å; R53-I55 PolarHBondContact O-N 2.84Å; I55-D57 VanDerWaalsContact C-N 3.35Å; I55-D57 PolarHBondContact O-N 3.38Å; I55-L58 PolarHBondContact O-N 3.27Å; I55-G59 PolarHBondContact O-N 3.17Å
56	K	88.4	Confident	80.7	Confident	131 Å²	131	118.8 Å²	118.8	57%	0.57	57%	0.57	S	S	*	*	H	α-helix	trans	-62.8	-42.9	179.2	-73.7	170.9	-179.9	173.3	0	111.5	C52 R53 L54 G59 R60	C52-K56 WeakPolarHBondContact O-CG 3.34Å; C52-K56 PolarHBondContact O-N 3.28Å; R53-K56 WeakPolarHBondContact O-CB 3.36Å; R53-K56 PolarHBondContact O-N 3.16Å; R53-K56 VanDerWaalsContact O-N 3.11Å; L54-K56 VanDerWaalsContact C-N 3.31Å; L54-K56 PolarHBondContact O-N 3.42Å; K56-G59 PolarHBondContact O-N 3.13Å; K56-R60 WeakPolarHBondContact O-CG 3.4Å; K56-R60 PolarHBondContact O-N 2.6Å
57	D	89	Confident	80.1	Confident	101 Å²	101	119.6 Å²	119.6	54%	0.54	58%	0.575	S	S	.	*	H	α-helix	trans	-68.5	-43.9	179.5	-68.1	-18.8	0	0	0	111.6	R53 L54 I55 G59 R60 R61	R53-D57 PolarHBondContact O-N 3.21Å; L54-D57 PolarHBondContact O-N 3.04Å; I55-D57 VanDerWaalsContact C-N 3.35Å; I55-D57 PolarHBondContact O-N 3.38Å; D57-G59 VanDerWaalsContact C-N 3.32Å; D57-G59 PolarHBondContact O-N 3.04Å; D57-R60 PolarHBondContact O-N 3.19Å; D57-R61 PolarHBondContact O-N 3.39Å
58	L	86.8	Confident	79.7	Confident	95 Å²	95	121.4 Å²	121.4	50%	0.497	58%	0.584	S	S	.	*	H	α-helix	trans	-61.5	-41.1	174	-68.5	173.6	0	0	0	111.6	L54 I55 R61 L62	L54-L58 HydrophobicContact CD1-CD1 3.93Å; L54-L58 HydrophobicContact CD1-CG 4.12Å; L54-L58 HydrophobicContact CG-CD1 3.86Å; L54-L58 HydrophobicContact CG-CG 4.44Å; L54-L58 WeakPolarHBondContact O-CB 3.43Å; L54-L58 VanDerWaalsContact O-CG 3.24Å; L54-L58 WeakPolarHBondContact O-CG 3.4Å; L54-L58 PolarHBondContact O-N 3.47Å; I55-L58 PolarHBondContact O-N 3.27Å; L58-R61 PolarHBondContact O-N 2.78Å; L58-L62 PolarHBondContact O-N 2.84Å
59	G	81.5	Confident	79.1	Confident	32 Å²	32	122.1 Å²	122.1	33%	0.33	59%	0.594	S	S	.	*	H	α-helix	trans	-65.7	-36.3	177	0	0	0	0	0	113.3	I55 K56 D57 L62 R63	I55-G59 PolarHBondContact O-N 3.17Å; K56-G59 PolarHBondContact O-N 3.13Å; D57-G59 VanDerWaalsContact C-N 3.32Å; D57-G59 PolarHBondContact O-N 3.04Å; G59-L62 PolarHBondContact O-N 3.26Å; G59-R63 WeakPolarHBondContact O-CG 3.29Å; G59-R63 PolarHBondContact O-N 3.02Å
60	R	72.4	Confident	78.3	Confident	194 Å²	194	123.9 Å²	123.9	73%	0.732	60%	0.601	S	S	*	*	H	α-helix	trans	-64	-43.8	171.5	-76.9	178.5	180	-114.8	1.9	111.3	K56 D57 L62 R63	K56-R60 WeakPolarHBondContact O-CG 3.4Å; K56-R60 PolarHBondContact O-N 2.6Å; D57-R60 PolarHBondContact O-N 3.19Å; R60-L62 VanDerWaalsContact C-N 3.33Å; R60-L62 PolarHBondContact O-N 2.99Å; R60-R63 PolarHBondContact O-N 3.03Å
61	R	70.1	Confident	77.5	Confident	204 Å²	204	127.6 Å²	127.6	77%	0.77	62%	0.617	S	S	*	*	H	α-helix	trans	-64	-37.4	178.1	-173.5	178.1	-75.2	-168.8	-3	112.3	D57 L58 R63	D57-R61 PolarHBondContact O-N 3.39Å; L58-R61 PolarHBondContact O-N 2.78Å; R61-R63 VanDerWaalsContact C-N 3.3Å; R61-R63 PolarHBondContact O-N 3.22Å
62	L	68.2	Low	76.7	Confident	148 Å²	148	130.5 Å²	130.5	78%	0.775	64%	0.636	S	S	*	*	H	α-helix	trans	-70.5	-22.1	-178.7	-171.5	61.9	0	0	0	113.6	L58 G59 R60 V64	L58-L62 PolarHBondContact O-N 2.84Å; G59-L62 PolarHBondContact O-N 3.26Å; R60-L62 VanDerWaalsContact C-N 3.33Å; R60-L62 PolarHBondContact O-N 2.99Å; L62-V64 VanDerWaalsContact C-N 3.34Å; L62-V64 PolarHBondContact O-N 2.84Å
63	R	63.1	Low	75.9	Confident	210 Å²	210	135.8 Å²	135.8	79%	0.792	65%	0.654	S	S	*	*	G	3₁₀ helix	trans	-82.9	-2.3	-178.1	-73.6	-175.6	-173.8	171.7	2.4	115.1	G59 R60 R61 G65	G59-R63 WeakPolarHBondContact O-CG 3.29Å; G59-R63 PolarHBondContact O-N 3.02Å; R60-R63 PolarHBondContact O-N 3.03Å; R61-R63 VanDerWaalsContact C-N 3.3Å; R61-R63 PolarHBondContact O-N 3.22Å; R63-G65 PolarHBondContact O-N 3.21Å
64	V	61.9	Low	74.7	Confident	128 Å²	128	135.9 Å²	135.9	78%	0.776	67%	0.665	S	S	*	*	G	3₁₀ helix	trans	-78.1	-2.1	-176.7	-175.6	0	0	0	0	112.9	L62	L62-V64 VanDerWaalsContact C-N 3.34Å; L62-V64 PolarHBondContact O-N 2.84Å
65	G	61.7	Low	73.5	Confident	74 Å²	74	139.7 Å²	139.7	76%	0.763	68%	0.681	S	S	*	*	G	3₁₀ helix	trans	-119.7	30.6	-177.6	0	0	0	0	0	115.6	R63	R63-G65 PolarHBondContact O-N 3.21Å
66	K	50.9	Low	72.2	Confident	271 Å²	271	144.4 Å²	144.4	100%	1.178	70%	0.702	S	S	*	*			trans	-117.1	0	171.1	-89	-160.1	171.5	-171.8	0	111.6

Retrieved 66 of 66 residues in 32.9 ms (Link to these results)

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