A0A087WS95_MOUSE Loading...

Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein

AlphaFold DB , UniProt , Accession A0A087WS95, Species MOUSE (Mus musculus, Mouse), Gene Rrp9, Length 67 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1S41.1Very low51.2Low164 Ų164133.6 Ų133.6100%1.14780%0.795SS**  0107.40-42.30000108.9
2P44.3Very low51Low128 Ų128130.6 Ų130.683%0.83178%0.781SS**  trans-84.2127169.131.5-24.8000109L4P2-L4 PolarHBondContact O-N 2.93Å
3S49.6Very low51.5Low119 Ų119132.4 Ų132.483%0.83278%0.783SS**  trans-62.1110.9-176.6-380000110.4S5S3-S5 VanDerWaalsContact C-N 3.31Å; S3-S5 PolarHBondContact O-N 3.26Å
4L50.6Low51.6Low169 Ų169130.9 Ų130.989%0.88578%0.776SS**  trans-69.893.3168.2-89.4141.8000108.7P2 S6P2-L4 PolarHBondContact O-N 2.93Å; L4-S6 PolarHBondContact O-N 2.81Å
5S45.8Very low51.6Low95 Ų95127.9 Ų127.966%0.66476%0.759SS**  trans44.575.7133.8-52.90000115.3S3 M7S3-S5 VanDerWaalsContact C-N 3.31Å; S3-S5 PolarHBondContact O-N 3.26Å; S5-M7 PolarHBondContact O-N 2.81Å
6S46.5Very low51.5Low118 Ų118125.8 Ų125.883%0.82575%0.753SS**  trans-69.581.4148.9-173.10000106.7L4 A8L4-S6 PolarHBondContact O-N 2.81Å; S6-A8 PolarHBondContact O-N 2.86Å
7M54.5Low51.6Low164 Ų164126.1 Ų126.181%0.80875%0.748SS**  trans-70.680.9170.1-147.2163.810700105.3S5 T9S5-M7 PolarHBondContact O-N 2.81Å; M7-T9 PolarHBondContact O-N 3.37Å
8A57Low51.5Low68 Ų68124.8 Ų124.856%0.56275%0.747SS**  trans-63.394.4170.100000105.9S6 R10S6-A8 PolarHBondContact O-N 2.86Å; A8-R10 PolarHBondContact O-N 3.41Å
9T59.2Low51.4Low114 Ų114122.6 Ų122.670%0.69974%0.738SS**  trans-54.696.1171.4-570000106.7M7 V11M7-T9 PolarHBondContact O-N 3.37Å; T9-V11 HydrophobicContact CG2-CG2 4.29Å; T9-V11 PolarHBondContact O-N 2.92Å
10R56.6Low51.5Low224 Ų224121.3 Ų121.385%0.84573%0.73SS**  trans-69.485.7168.9-69.6-112-170.1-103.30.8104.9A8 P12A8-R10 PolarHBondContact O-N 3.41Å; R10-P12 VanDerWaalsContact O-N 3.08Å; R10-P12 WeakPolarHBondContact O-CD 3.27Å; R10-P12 VanDerWaalsContact O-CD 3.27Å
11V57.6Low51.4Low107 Ų107125.9 Ų125.965%0.64874%0.735SS**  trans-53117.1165.4-179.30000104.8T9 L13T9-V11 HydrophobicContact CG2-CG2 4.29Å; T9-V11 PolarHBondContact O-N 2.92Å; V11-L13 PolarHBondContact O-N 2.82Å
12P48.7Very low52Low97 Ų97121 Ų12163%0.6370%0.7SS**  trans-61.7113.2168.425.5-28.1000104.3R10 T14R10-P12 VanDerWaalsContact O-N 3.08Å; R10-P12 WeakPolarHBondContact O-CD 3.27Å; R10-P12 VanDerWaalsContact O-CD 3.27Å; P12-T14 PolarHBondContact O-N 2.76Å; P12-T14 PolarHBondContact O-OG1 3.19Å
13L58.7Low52.3Low154 Ų154118.8 Ų118.881%0.80669%0.685SS**  trans-64.173.5158.5-81.9154.5000104.8V11 V15V11-L13 PolarHBondContact O-N 2.82Å; L13-V15 HydrophobicContact CB-CG2 4.16Å; L13-V15 WeakPolarHBondContact O-CG2 3.45Å; L13-V15 PolarHBondContact O-N 2.8Å
14T51.6Low52.5Low111 Ų111122.2 Ų122.268%0.68168%0.68SS**  trans-69.176.9160-330000103.4P12 S16P12-T14 PolarHBondContact O-N 2.76Å; P12-T14 PolarHBondContact O-OG1 3.19Å; T14-S16 PolarHBondContact O-OG 2.75Å; T14-S16 PolarHBondContact O-N 3.49Å; T14-S16 VanDerWaalsContact C-N 3.27Å
15V52Low52.6Low86 Ų86118.5 Ų118.552%0.52167%0.667SS.*  trans-50.2100.6171164.60000104.8L13 I17L13-V15 HydrophobicContact CB-CG2 4.16Å; L13-V15 WeakPolarHBondContact O-CG2 3.45Å; L13-V15 PolarHBondContact O-N 2.8Å; V15-I17 HydrophobicContact CB-CD1 4.46Å; V15-I17 HydrophobicContact CG1-CB 3.9Å; V15-I17 HydrophobicContact CG1-CD1 3.03Å; V15-I17 HydrophobicContact CG1-CG1 3.14Å; V15-I17 PolarHBondContact O-N 2.82Å
16S50Low53Low94 Ų94122.5 Ų122.566%0.65767%0.667SS**  trans-67.545.8172.2-65.30000110.7T14 S18 S19T14-S16 PolarHBondContact O-OG 2.75Å; T14-S16 PolarHBondContact O-N 3.49Å; T14-S16 VanDerWaalsContact C-N 3.27Å; S16-S18 PolarHBondContact O-N 2.75Å; S16-S19 PolarHBondContact O-N 2.71Å
17I54.2Low53.4Low132 Ų132120.1 Ų120.168%0.67766%0.655SS**THydrogen-bonded Turntrans-70.169160.5-64.6163.8000106.5V15V15-I17 HydrophobicContact CB-CD1 4.46Å; V15-I17 HydrophobicContact CG1-CB 3.9Å; V15-I17 HydrophobicContact CG1-CD1 3.03Å; V15-I17 HydrophobicContact CG1-CG1 3.14Å; V15-I17 PolarHBondContact O-N 2.82Å
18S48.8Very low53.4Low103 Ų103119.2 Ų119.272%0.7265%0.648SS**THydrogen-bonded Turntrans-156.1-17.8162.5-81.10000109.5S16S16-S18 PolarHBondContact O-N 2.75Å
19S49.9Very low53.2Low83 Ų83122.7 Ų122.758%0.5866%0.655SS**Hα-helixtrans-84.4-20.7179.3-156.80000114.3S16 T23S16-S19 PolarHBondContact O-N 2.71Å; S19-T23 PolarHBondContact O-OG1 3.43Å
20T53Low52.9Low95 Ų95124.8 Ų124.858%0.58366%0.659SS**Hα-helixtrans-87.3-22.9179.343.20000114.3T23T20-T23 PolarHBondContact O-OG1 3.46Å
21R49.7Very low52.8Low218 Ų218118.1 Ų118.182%0.82365%0.651SS**Hα-helixtrans-79.9-25.9177.5-169.9173.4155.6-176.8-6.7112.5
22S52.8Low53Low61 Ų61119.6 Ų119.643%0.42766%0.655SS.*Hα-helixtrans-77.6-33179-1610000113R26S22-R26 PolarHBondContact O-N 3.2Å
23T52.3Low53.4Low83 Ų83124.7 Ų124.751%0.50966%0.661SS.*Hα-helixtrans-73.6-38.2-180390000112.8S19 T20 C25 R26 A27S19-T23 PolarHBondContact O-OG1 3.43Å; T20-T23 PolarHBondContact O-OG1 3.46Å; T23-C25 VanDerWaalsContact C-N 3.34Å; T23-C25 PolarHBondContact O-N 3Å; T23-R26 PolarHBondContact O-N 3.3Å; T23-A27 WeakPolarHBondContact O-CB 3.49Å; T23-A27 PolarHBondContact O-N 3.32Å
24W52.4Low53.1Low191 Ų191123.3 Ų123.372%0.72366%0.662SS**Hα-helixtrans-65.3-35.4176.9-94.568.6000113.5Q28W24-Q28 PolarHBondContact O-N 3.35Å
25C54.3Low53.1Low90 Ų90122.1 Ų122.161%0.60866%0.657SS**Hα-helixtrans-71.9-31.6178.8-147.80000111.9T23T23-C25 VanDerWaalsContact C-N 3.34Å; T23-C25 PolarHBondContact O-N 3Å
26R52.4Low53.1Low180 Ų180121.2 Ų121.268%0.67967%0.665SS**Hα-helixtrans-79-32.9175.2-69-178.1-163.8-106.82.3113.4S22 T23 Q28 M29S22-R26 PolarHBondContact O-N 3.2Å; T23-R26 PolarHBondContact O-N 3.3Å; R26-Q28 VanDerWaalsContact C-N 3.32Å; R26-Q28 PolarHBondContact O-N 3.45Å; R26-M29 PolarHBondContact O-N 3.44Å
27A56.1Low53.3Low68 Ų68121.5 Ų121.556%0.56267%0.673SS**Hα-helixtrans-65.7-33.6178.400000112.7T23 M29T23-A27 WeakPolarHBondContact O-CB 3.49Å; T23-A27 PolarHBondContact O-N 3.32Å; A27-M29 VanDerWaalsContact C-N 3.33Å; A27-M29 PolarHBondContact O-N 3.44Å
28Q54Low53.2Low144 Ų144120 Ų12067%0.67367%0.674SS**G310 helixtrans-73.6-19.9178.7-71.1-157.572.300114.1W24 R26W24-Q28 PolarHBondContact O-N 3.35Å; R26-Q28 VanDerWaalsContact C-N 3.32Å; R26-Q28 PolarHBondContact O-N 3.45Å
29M53Low53.3Low141 Ų141120.2 Ų120.270%0.69567%0.673SS**G310 helixtrans-84-11.6178.8-72.6-149.9-98.700114.4R26 A27R26-M29 PolarHBondContact O-N 3.44Å; A27-M29 VanDerWaalsContact C-N 3.33Å; A27-M29 PolarHBondContact O-N 3.44Å
30M52.8Low53.5Low159 Ų159127.5 Ų127.578%0.78369%0.688SS**G310 helixtrans-90.1-3.6179.4-65.8-75.612900113.4
31A54.9Low53.6Low83 Ų83130.8 Ų130.869%0.68670%0.702SS**  trans-99.418.7-175.300000114.3
32L61.4Low53.4Low138 Ų138123.6 Ų123.672%0.72370%0.696SS**  trans-108.365.5176.4-76.7155.5000110.6
33W56.9Low53Low204 Ų204129.6 Ų129.677%0.77372%0.717SS**  trans-144.4107.6159.4-71.7112.1000110.2C35W33-C35 VanDerWaalsContact C-N 3.32Å; W33-C35 HydrophobicContact CE3-CB 4.33Å; W33-C35 VanDerWaalsContact CZ3-SG 3.54Å
34P51.8Low52.4Low125 Ų125130.3 Ų130.381%0.81273%0.725SS**  -87.887.612531.8-16.6000105.3G36P34-G36 PolarHBondContact O-N 2.74Å
35C52.6Low52.1Low87 Ų87126.5 Ų126.559%0.58873%0.725SS**  trans-60100.8154.9-93.20000104.3W33 A37W33-C35 VanDerWaalsContact C-N 3.32Å; W33-C35 HydrophobicContact CE3-CB 4.33Å; W33-C35 VanDerWaalsContact CZ3-SG 3.54Å; C35-A37 PolarHBondContact O-N 2.82Å
36G52.5Low51.6Low67 Ų67127.7 Ų127.769%0.69174%0.735SS**  trans-44.1117.4179.200000108.2P34 S38P34-G36 PolarHBondContact O-N 2.74Å; G36-S38 PolarHBondContact O-N 2.84Å
37A52.6Low51.5Low99 Ų99124.1 Ų124.182%0.81874%0.737SS**  trans-61.892.816800000105.6C35 P39C35-A37 PolarHBondContact O-N 2.82Å; A37-P39 WeakPolarHBondContact O-CD 3.47Å; A37-P39 VanDerWaalsContact O-N 3.15Å
38S53.5Low50.9Low101 Ų101121.9 Ų121.971%0.70672%0.719SS**  trans-48.6119.9171.2179.60000106.9G36 R40G36-S38 PolarHBondContact O-N 2.84Å; S38-R40 VanDerWaalsContact C-N 3.3Å; S38-R40 PolarHBondContact O-N 2.98Å
39P50.9Low50.8Low108 Ų108122.2 Ų122.270%0.70172%0.718SS**  trans-67.4100.6175.325.7-27.6000105.9A37 N41A37-P39 WeakPolarHBondContact O-CD 3.47Å; A37-P39 VanDerWaalsContact O-N 3.15Å; P39-N41 VanDerWaalsContact C-N 3.28Å; P39-N41 PolarHBondContact O-N 2.91Å
40R53.6Low51Low236 Ų236123.8 Ų123.889%0.89173%0.728SS**  trans-71.497.1173.8-167.2170169.9-178.9-4.4105.4S38 G42S38-R40 VanDerWaalsContact C-N 3.3Å; S38-R40 PolarHBondContact O-N 2.98Å; R40-G42 VanDerWaalsContact C-N 3.27Å; R40-G42 PolarHBondContact O-N 2.81Å
41N55.3Low50.8Low163 Ų163124.3 Ų124.387%0.87273%0.731SS**  trans-50.496.4165.5-69.8-18.8000108P39P39-N41 VanDerWaalsContact C-N 3.28Å; P39-N41 PolarHBondContact O-N 2.91Å
42G44.9Very low50.3Low67 Ų67122.6 Ų122.669%0.69172%0.721SS**  trans-134.987.4176.800000106.4R40R40-G42 VanDerWaalsContact C-N 3.27Å; R40-G42 PolarHBondContact O-N 2.81Å
43H44.8Very low49.2Very low187 Ų187124.6 Ų124.687%0.86672%0.724SS**  trans-55.5139.7178-144.4136.7000111
44S39.1Very low48.8Very low99 Ų99121.6 Ų121.669%0.69273%0.728SS**  trans115.9147.3145.2-52.80000116.4
45P47.7Very low48.6Very low111 Ų111118.6 Ų118.672%0.72172%0.721SS**  -114.5144.5-58.831-18.2000109S47P45-S47 PolarHBondContact O-N 2.9Å
46S44.1Very low48.7Very low115 Ų115120 Ų12080%0.80473%0.731SS**  trans-68.385.5161.5177.60000108.4
47S48.4Very low48.6Very low104 Ų104124 Ų12473%0.72773%0.732SS**  -77.7128.3122.952.10000103.5P45P45-S47 PolarHBondContact O-N 2.9Å
48A45.1Very low49Very low22 Ų22124 Ų12418%0.18273%0.732CS.*  trans146.4129.3134.700000118.5L50 M51 G52A48-L50 CarbonylContact C-O 3.57Å; A48-L50 WeakPolarHBondContact CB-O 2.65Å; A48-L50 WeakPolarHBondContact CA-O 3.44Å; A48-M51 CarbonylContact C-O 3.28Å; A48-M51 VanDerWaalsContact C-O 3.28Å; A48-M51 HydrophobicContact CB-CB 3.16Å; A48-M51 WeakPolarHBondContact CB-O 3.5Å; A48-M51 CarbonylContact O-C 2.6Å; A48-M51 WeakPolarHBondContact O-CA 3.28Å; A48-G52 WeakPolarHBondContact O-CA 2.84Å; A48-G52 PolarHBondContact O-N 2.78Å; A48-G52 VanDerWaalsContact O-CA 3.28Å
49K51.9Low48.6Very low150 Ų150129.8 Ų129.865%0.65274%0.738SS**SBend-13631.1122.3-149.9124.4169.1167.10116M51 G52 F53K49-M51 VanDerWaalsContact N-C 3.32Å; K49-G52 VanDerWaalsContact CB-CA 3.42Å; K49-F53 HydrophobicContact CB-CD2 3.68Å; K49-F53 HydrophobicContact CB-CE2 4.31Å; K49-F53 HydrophobicContact CD-CD2 3.95Å; K49-F53 HydrophobicContact CG-CD2 3.66Å; K49-F53 HydrophobicContact CG-CE2 4.25Å
50L56Low49Very low175 Ų175130.2 Ų130.292%0.91674%0.744SS**SBendcis43.15.21.5-96.6148.6000117.4A48A48-L50 CarbonylContact C-O 3.57Å; A48-L50 WeakPolarHBondContact CB-O 2.65Å; A48-L50 WeakPolarHBondContact CA-O 3.44Å
51M49.8Very low49Very low170 Ų170126.4 Ų126.484%0.83774%0.741SS**SBendtrans78.759.6-148.5-137.7-172.8-6200130.8A48 K49A48-M51 CarbonylContact C-O 3.28Å; A48-M51 VanDerWaalsContact C-O 3.28Å; A48-M51 HydrophobicContact CB-CB 3.16Å; A48-M51 WeakPolarHBondContact CB-O 3.5Å; A48-M51 CarbonylContact O-C 2.6Å; A48-M51 WeakPolarHBondContact O-CA 3.28Å; K49-M51 VanDerWaalsContact N-C 3.32Å
52G43.3Very low48.6Very low46 Ų46124.1 Ų124.147%0.47474%0.735SS.*  trans129.799.3173.900000123.3A48 K49A48-G52 WeakPolarHBondContact O-CA 2.84Å; A48-G52 PolarHBondContact O-N 2.78Å; A48-G52 VanDerWaalsContact O-CA 3.28Å; K49-G52 VanDerWaalsContact CB-CA 3.42Å
53F38.3Very low49.1Very low181 Ų181126.2 Ų126.279%0.79474%0.739SS**  trans-68.7141-173.4-104.3-111.9000114K49K49-F53 HydrophobicContact CB-CD2 3.68Å; K49-F53 HydrophobicContact CB-CE2 4.31Å; K49-F53 HydrophobicContact CD-CD2 3.95Å; K49-F53 HydrophobicContact CG-CD2 3.66Å; K49-F53 HydrophobicContact CG-CE2 4.25Å
54T48.3Very low49.5Very low140 Ų140121 Ų12186%0.85974%0.736SS**  trans-58.9142.9170.129.40000114.7
55G48.4Very low49.5Very low63 Ų63122.8 Ų122.865%0.64975%0.747SS**  trans131.6124.5139.100000115.6
56S55.1Low49.5Very low115 Ų115126.1 Ų126.180%0.80475%0.752SS**  trans85.9134153.9-27.60000113.6
57Q49.1Very low49.9Very low152 Ų152129.4 Ų129.471%0.7177%0.771SS**  cis-156.813339.4-68.8171.761.500110.4
58A62.3Low50Low99 Ų99130.7 Ų130.782%0.81877%0.773SS**  trans-60.8127.5160.600000109.8
59W44.4Very low50.3Low223 Ų223136.4 Ų136.485%0.84580%0.804SS**  trans-131.3123.6164.2-78.167.5000108.7
60S58.7Low50.2Low117 Ų117135.6 Ų135.682%0.81881%0.813SS**  trans-71.6151.4-163.3-49.60000114
61N53.5Low49.8Very low156 Ų156133.3 Ų133.383%0.83481%0.807SS**  trans-37.3147.6171.6-119.6-21.1000115.6
62P48.3Very low49.8Very low115 Ų115131 Ų13175%0.74781%0.805SS**  trans-121.8104.1136.432.6-19.5000110.8
63S55.3Low50.3Low110 Ų110136.7 Ų136.777%0.76983%0.827SS**  trans39.3100.6132.4-420000119.5
64G53.2Low51.1Low78 Ų78133.5 Ų133.580%0.80483%0.829SS**  47.7104.8128.900000120.4
65C38.3Very low51.3Low136 Ų136133 Ų13392%0.91983%0.827SS**  trans-123.6107.4146.5-72.50000108
66H46.8Very low51.6Low181 Ų181138.8 Ų138.884%0.83884%0.842SS**  trans-90.9147.5167.4-141.2-101.7000108
67P53.8Low51.3Low184 Ų184141 Ų141100%1.19585%0.845SS**  trans-67.40173.729.6-36000113.3

Retrieved 67 of 67 residues in 77.6 ms (Link to these results)