A0A087WTA2_HUMAN Loading...

SYNJ2BP-COX16 readthrough

AlphaFold DB , UniProt , Accession A0A087WTA2, Species HUMAN (Homo sapiens, Human), Gene SYNJ2BP-COX16, Length 40 aa.

						>A0A087WTA2_HUMAN|A0A087WTA2|SYNJ2BP-COX16
MNGRVDYLVTEEEINLTRGPSGKWPRPKEPAAPGCCRPLS
					

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(Predicted Aligned Error values between residue pairs)

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Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	55.9	Low	76.2	Confident	238 Å²	238	144.9 Å²	144.9	100%	1.172	75%	0.745	S	S	*	*				0	99.3	0	-159.4	159.1	79.5	0	0	106.7	G3	M1-G3 PolarHBondContact O-N 3.25Å
2	N	70.3	Confident	76.6	Confident	172 Å²	172	144.9 Å²	144.9	92%	0.92	74%	0.739	S	S	*	*			trans	-86	89	177.4	-81.2	-59	0	0	0	107.6	R4	N2-R4 PolarHBondContact O-N 3.23Å
3	G	72.8	Confident	77	Confident	65 Å²	65	141.2 Å²	141.2	67%	0.67	72%	0.717	S	S	*	*			trans	-66.1	114	174.6	0	0	0	0	0	108.8	M1 V5	M1-G3 PolarHBondContact O-N 3.25Å; G3-V5 PolarHBondContact O-N 3.4Å
4	R	76.2	Confident	77.4	Confident	229 Å²	229	135.8 Å²	135.8	86%	0.864	69%	0.69	S	S	*	*			trans	-62.7	130.4	166.5	-75.8	-176	-179	175.7	0.7	107.3	N2	N2-R4 PolarHBondContact O-N 3.23Å
5	V	76.6	Confident	77.6	Confident	113 Å²	113	133.7 Å²	133.7	69%	0.685	68%	0.681	S	S	*	*			trans	-86.5	110.3	171.5	177.2	0	0	0	0	106.1	G3 Y7	G3-V5 PolarHBondContact O-N 3.4Å; V5-Y7 VanDerWaalsContact CG1-O 3.24Å; V5-Y7 WeakPolarHBondContact CG1-O 3.24Å; V5-Y7 PolarHBondContact O-N 3.39Å
6	D	79.3	Confident	77.8	Confident	130 Å²	130	133.9 Å²	133.9	70%	0.695	68%	0.683	S	S	*	*	S	Bend	trans	-71.6	-18.1	-176.8	-66.6	-70.1	0	0	0	112.7
7	Y	75.3	Confident	77.5	Confident	178 Å²	178	132.9 Å²	132.9	70%	0.698	69%	0.686	S	S	*	*			trans	-159.9	134.3	179.8	23.1	-91.1	0	0	0	111.9	V5	V5-Y7 VanDerWaalsContact CG1-O 3.24Å; V5-Y7 WeakPolarHBondContact CG1-O 3.24Å; V5-Y7 PolarHBondContact O-N 3.39Å
8	L	82.8	Confident	77.3	Confident	160 Å²	160	133.9 Å²	133.9	84%	0.838	68%	0.679	S	S	*	*	P	Polyproline II helix	trans	-87.6	116.5	164.3	-98.4	89.5	0	0	0	108.1
9	V	82.3	Confident	76.8	Confident	81 Å²	81	129.4 Å²	129.4	49%	0.491	67%	0.67	S	S	.	*	P	Polyproline II helix	trans	-92.4	128.4	170.4	-171.3	0	0	0	0	108.3	E13 I14	V9-E13 HydrophobicContact CG1-CB 4.02Å; V9-I14 HydrophobicContact CG1-CG1 3.67Å; V9-I14 HydrophobicContact CG1-CD1 4.16Å
10	T	84.7	Confident	76.6	Confident	66 Å²	66	129.4 Å²	129.4	41%	0.405	68%	0.678	S	S	.	*	P	Polyproline II helix	trans	-81.1	155.6	178.7	62.6	0	0	0	0	111.9	E12 E13 I14	T10-E12 PolarHBondContact O-N 2.88Å; T10-E13 PolarHBondContact N-OE2 3.25Å; T10-E13 PolarHBondContact O-N 3.36Å; T10-E13 WeakPolarHBondContact OG1-CG 3.33Å; T10-E13 PolarHBondContact OG1-N 3.25Å; T10-E13 PolarHBondContact OG1-OE2 2.88Å; T10-I14 PolarHBondContact O-N 3.27Å; T10-I14 VanDerWaalsContact O-N 3.11Å; T10-I14 WeakPolarHBondContact O-CG1 3.49Å
11	E	82.3	Confident	76.1	Confident	162 Å²	162	128 Å²	128	76%	0.757	68%	0.679	S	S	*	*	H	α-helix	trans	-58.6	-32.1	173.2	-66.8	-171.5	91.5	0	0	111.8	I14 N15	E11-I14 PolarHBondContact O-N 2.81Å; E11-N15 WeakPolarHBondContact O-CB 3.45Å; E11-N15 PolarHBondContact O-N 3.42Å; E11-N15 PolarHBondContact O-ND2 3.38Å
12	E	80.8	Confident	76.5	Confident	145 Å²	145	119.2 Å²	119.2	68%	0.678	65%	0.65	S	S	*	*	H	α-helix	trans	-62.5	-49.4	175.6	-174.9	172.6	85.3	0	0	112.1	T10 I14 N15 L16	T10-E12 PolarHBondContact O-N 2.88Å; E12-I14 VanDerWaalsContact C-N 3.3Å; E12-I14 PolarHBondContact O-N 2.87Å; E12-N15 PolarHBondContact O-N 3.11Å; E12-N15 VanDerWaalsContact O-N 3.17Å; E12-L16 HydrophobicContact CG-CD1 4.27Å; E12-L16 VanDerWaalsContact O-CG 3.32Å; E12-L16 WeakPolarHBondContact O-CG 3.28Å; E12-L16 PolarHBondContact O-N 3.4Å
13	E	82	Confident	76	Confident	97 Å²	97	120 Å²	120	45%	0.453	65%	0.645	S	S	.	*	H	α-helix	trans	-62.7	-36.1	176.3	-77.3	169.3	92.9	0	0	112.6	V9 T10 L16 T17	V9-E13 HydrophobicContact CG1-CB 4.02Å; T10-E13 PolarHBondContact N-OE2 3.25Å; T10-E13 PolarHBondContact O-N 3.36Å; T10-E13 WeakPolarHBondContact OG1-CG 3.33Å; T10-E13 PolarHBondContact OG1-N 3.25Å; T10-E13 PolarHBondContact OG1-OE2 2.88Å; E13-L16 PolarHBondContact O-N 3.25Å; E13-T17 WeakPolarHBondContact O-CG2 3.5Å; E13-T17 PolarHBondContact O-OG1 3.17Å; E13-T17 PolarHBondContact O-N 3.11Å; E13-T17 VanDerWaalsContact O-N 3.11Å
14	I	82.8	Confident	75.4	Confident	65 Å²	65	128.5 Å²	128.5	33%	0.333	66%	0.657	S	S	.	*	H	α-helix	trans	-66.1	-42.1	175.3	-65.7	164.1	0	0	0	110.4	V9 T10 E11 E12 L16 T17 R18	V9-I14 HydrophobicContact CG1-CG1 3.67Å; V9-I14 HydrophobicContact CG1-CD1 4.16Å; T10-I14 PolarHBondContact O-N 3.27Å; T10-I14 VanDerWaalsContact O-N 3.11Å; T10-I14 WeakPolarHBondContact O-CG1 3.49Å; E11-I14 PolarHBondContact O-N 2.81Å; E12-I14 VanDerWaalsContact C-N 3.3Å; E12-I14 PolarHBondContact O-N 2.87Å; I14-L16 VanDerWaalsContact C-N 3.34Å; I14-T17 PolarHBondContact O-N 3.46Å; I14-T17 PolarHBondContact O-OG1 2.91Å; I14-R18 HydrophobicContact CG2-CG 4.39Å; I14-R18 VanDerWaalsContact O-CB 3.28Å; I14-R18 WeakPolarHBondContact O-CB 3.33Å; I14-R18 WeakPolarHBondContact O-CG 3.44Å; I14-R18 PolarHBondContact O-N 2.94Å
15	N	79.5	Confident	74.9	Confident	105 Å²	105	122.8 Å²	122.8	56%	0.561	65%	0.65	S	S	*	*	H	α-helix	trans	-70.3	-30.8	179.8	-70.5	-31.2	0	0	0	112.4	E11 E12	E11-N15 WeakPolarHBondContact O-CB 3.45Å; E11-N15 PolarHBondContact O-N 3.42Å; E11-N15 PolarHBondContact O-ND2 3.38Å; E12-N15 PolarHBondContact O-N 3.11Å; E12-N15 VanDerWaalsContact O-N 3.17Å
16	L	80.7	Confident	74.3	Confident	136 Å²	136	127.5 Å²	127.5	71%	0.712	66%	0.655	S	S	*	*	H	α-helix	trans	-71.1	-37	174.2	-72.5	168.9	0	0	0	112.7	E12 E13 I14	E12-L16 HydrophobicContact CG-CD1 4.27Å; E12-L16 VanDerWaalsContact O-CG 3.32Å; E12-L16 WeakPolarHBondContact O-CG 3.28Å; E12-L16 PolarHBondContact O-N 3.4Å; E13-L16 PolarHBondContact O-N 3.25Å; I14-L16 VanDerWaalsContact C-N 3.34Å
17	T	73.8	Confident	73.8	Confident	118 Å²	118	126.5 Å²	126.5	72%	0.724	66%	0.656	S	S	*	*	H	α-helix	trans	-89.2	-25.7	-177.1	50.7	0	0	0	0	113.6	E13 I14 G19	E13-T17 WeakPolarHBondContact O-CG2 3.5Å; E13-T17 PolarHBondContact O-OG1 3.17Å; E13-T17 PolarHBondContact O-N 3.11Å; E13-T17 VanDerWaalsContact O-N 3.11Å; I14-T17 PolarHBondContact O-N 3.46Å; I14-T17 PolarHBondContact O-OG1 2.91Å; T17-G19 PolarHBondContact O-N 2.96Å
18	R	72.8	Confident	73.6	Confident	150 Å²	150	127.6 Å²	127.6	57%	0.566	66%	0.664	S	S	*	*	S	Bend	trans	-69.7	83.2	163	-81.1	170.5	66.4	162.1	-3.2	108.1	I14	I14-R18 HydrophobicContact CG2-CG 4.39Å; I14-R18 VanDerWaalsContact O-CB 3.28Å; I14-R18 WeakPolarHBondContact O-CB 3.33Å; I14-R18 WeakPolarHBondContact O-CG 3.44Å; I14-R18 PolarHBondContact O-N 2.94Å
19	G	68.7	Low	73	Confident	49 Å²	49	127.3 Å²	127.3	51%	0.505	66%	0.659	S	S	.	*			trans	-45.2	162.4	162.5	0	0	0	0	0	111.2	T17 S21	T17-G19 PolarHBondContact O-N 2.96Å; G19-S21 PolarHBondContact O-N 3.19Å
20	P	72.3	Confident	72.3	Confident	129 Å²	129	128.7 Å²	128.7	84%	0.838	67%	0.669	S	S	*	*			trans	-40.6	108.8	-165	14.9	-30.5	0	0	0	112.2	G22	P20-G22 PolarHBondContact O-N 3.24Å
21	S	66.2	Low	71.6	Confident	99 Å²	99	130 Å²	130	69%	0.692	69%	0.687	S	S	*	*	T	Hydrogen-bonded Turn	trans	-67.6	81.8	-175.9	-174.1	0	0	0	0	108.6	G19	G19-S21 PolarHBondContact O-N 3.19Å
22	G	64.6	Low	70.9	Confident	55 Å²	55	126.2 Å²	126.2	57%	0.567	68%	0.683	S	S	*	*	T	Hydrogen-bonded Turn	trans	175.4	-0.5	-176.8	0	0	0	0	0	118.4	P20	P20-G22 PolarHBondContact O-N 3.24Å
23	K	60.8	Low	70.2	Confident	188 Å²	188	125.1 Å²	125.1	82%	0.817	69%	0.689	S	S	*	*			trans	-148.4	60.8	177.4	-51.3	-75.5	167.5	-171.5	0	110.6	P25	K23-P25 WeakPolarHBondContact O-CD 3.45Å; K23-P25 VanDerWaalsContact O-N 3.15Å
24	W	59.5	Low	69.5	Low	244 Å²	244	123.5 Å²	123.5	92%	0.924	70%	0.698	S	S	*	*			trans	-61.7	115.5	145.6	-70.5	103.1	0	0	0	104.2	R26	W24-R26 PolarHBondContact O-N 2.82Å
25	P	64.5	Low	68.9	Low	109 Å²	109	126.2 Å²	126.2	71%	0.708	72%	0.721	S	S	*	*	P	Polyproline II helix	trans	-54.1	117.8	174.2	22.3	-29.9	0	0	0	104.6	K23 P27	K23-P25 WeakPolarHBondContact O-CD 3.45Å; K23-P25 VanDerWaalsContact O-N 3.15Å; P25-P27 WeakPolarHBondContact O-CD 3.21Å
26	R	65.7	Low	68.2	Low	212 Å²	212	127.2 Å²	127.2	80%	0.8	74%	0.736	S	S	*	*	P	Polyproline II helix	trans	-46.4	124.2	172.7	-169.9	-172.7	178.8	155.4	0.9	104.3	W24 K28	W24-R26 PolarHBondContact O-N 2.82Å; R26-K28 PolarHBondContact O-N 2.87Å
27	P	68.8	Low	67.7	Low	109 Å²	109	131.4 Å²	131.4	71%	0.708	74%	0.742	S	S	*	*	P	Polyproline II helix	trans	-48.4	117	173.1	-22.9	30.6	0	0	0	104.7	P25 E29	P25-P27 WeakPolarHBondContact O-CD 3.21Å; P27-E29 PolarHBondContact O-N 2.81Å
28	K	70.9	Confident	67.3	Low	201 Å²	201	131.4 Å²	131.4	87%	0.874	74%	0.744	S	S	*	*			trans	-59.1	104.4	173.7	178.5	161.1	176.6	163.3	0	102.4	R26 P30	R26-K28 PolarHBondContact O-N 2.87Å; K28-P30 WeakPolarHBondContact O-CD 3.32Å
29	E	69	Low	67.3	Low	153 Å²	153	132.6 Å²	132.6	72%	0.715	76%	0.76	S	S	*	*			trans	-45.7	117.8	-179.3	-174.4	160	79.1	0	0	104.9	P27 A31	P27-E29 PolarHBondContact O-N 2.81Å; E29-A31 PolarHBondContact O-N 2.95Å
30	P	68.5	Low	67.2	Low	111 Å²	111	139.4 Å²	139.4	72%	0.721	80%	0.801	S	S	*	*			trans	-55.9	119	177.3	21.2	-28.8	0	0	0	104	K28 A32	K28-P30 WeakPolarHBondContact O-CD 3.32Å; P30-A32 PolarHBondContact O-N 2.84Å
31	A	68.8	Low	66.9	Low	93 Å²	93	140 Å²	140	77%	0.769	80%	0.799	S	S	*	*			trans	-48.1	114.4	178.4	0	0	0	0	0	105.6	E29 P33	E29-A31 PolarHBondContact O-N 2.95Å; A31-P33 VanDerWaalsContact O-N 3.08Å
32	A	67.6	Low	67	Low	83 Å²	83	142.1 Å²	142.1	69%	0.686	80%	0.804	S	S	*	*			trans	-50.1	126	-175.6	0	0	0	0	0	106.4	P30 G34	P30-A32 PolarHBondContact O-N 2.84Å; A32-G34 PolarHBondContact O-N 2.76Å
33	P	67.1	Low	67.1	Low	121 Å²	121	146.9 Å²	146.9	79%	0.786	82%	0.818	S	S	*	*			trans	-55.7	112.3	177.7	21.3	-29	0	0	0	105	A31 C35	A31-P33 VanDerWaalsContact O-N 3.08Å; P33-C35 PolarHBondContact O-N 2.91Å
34	G	67.5	Low	67.5	Low	64 Å²	64	144.5 Å²	144.5	66%	0.66	82%	0.818	S	S	*	*			trans	-47.7	117.5	-168.1	0	0	0	0	0	108.1	A32 C36	A32-G34 PolarHBondContact O-N 2.76Å; G34-C36 PolarHBondContact O-N 2.83Å
35	C	69.4	Low	68	Low	121 Å²	121	138.3 Å²	138.3	82%	0.818	81%	0.811	S	S	*	*			trans	-49.4	112.2	178.9	-83.7	0	0	0	0	107.3	P33 R37	P33-C35 PolarHBondContact O-N 2.91Å; C35-R37 VanDerWaalsContact C-N 3.35Å; C35-R37 PolarHBondContact O-N 2.88Å
36	C	64.8	Low	68.2	Low	127 Å²	127	140.3 Å²	140.3	86%	0.858	82%	0.818	S	S	*	*			trans	-54	102.7	172.6	-63.5	0	0	0	0	107	G34	G34-C36 PolarHBondContact O-N 2.83Å
37	R	70.6	Confident	68.4	Low	223 Å²	223	135.1 Å²	135.1	84%	0.842	82%	0.819	S	S	*	*			trans	-69.6	125.1	170.3	-60.4	-179.3	89.4	-178.2	5.7	105.5	C35 L39	C35-R37 VanDerWaalsContact C-N 3.35Å; C35-R37 PolarHBondContact O-N 2.88Å; R37-L39 PolarHBondContact O-N 2.75Å
38	P	65.9	Low	68.4	Low	119 Å²	119	137.2 Å²	137.2	77%	0.773	83%	0.828	S	S	*	*			trans	-61.5	126.7	169.2	24.2	-29.3	0	0	0	107.7	S40	P38-S40 PolarHBondContact O-N 2.9Å
39	L	71.6	Confident	68.2	Low	174 Å²	174	131.8 Å²	131.8	91%	0.911	82%	0.824	S	S	*	*			trans	-66.1	112.7	168.2	-67.4	167.6	0	0	0	106.2	R37	R37-L39 PolarHBondContact O-N 2.75Å
40	S	67.1	Low	68.1	Low	193 Å²	193	129.9 Å²	129.9	100%	1.35	83%	0.834	S	S	*	*			trans	-61.2	0	169.2	-65.7	0	0	0	0	111.5	P38	P38-S40 PolarHBondContact O-N 2.9Å

Retrieved 40 of 40 residues in 68.1 ms (Link to these results)

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