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Ragulator complex protein LAMTOR4

As part of the Ragulator complex it is involved in amino acid sensing and activation of mTORC1, a signaling complex promoting cell growth in response to growth factors, energy levels, and amino acids. Activated by amino acids through a mechanism involving the lysosomal V-ATPase, the Ragulator plays a dual role for the small GTPases Rag (RagA/RRAGA, RagB/RRAGB, RagC/RRAGC and/or RagD/RRAGD): it (1) acts as a guanine nucleotide exchange factor (GEF), activating the small GTPases Rag and (2) mediates recruitment of Rag GTPases to the lysosome membrane. Activated Ragulator and Rag GTPases function as a scaffold recruiting mTORC1 to lysosomes where it is in turn activated.

AlphaFold DB , UniProt , Accession A0A087WV46, Species HUMAN (Homo sapiens, Human), Gene LAMTOR4, Length 82 aa.

Structure Viewer
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(Predicted Aligned Error values between residue pairs)
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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M48.5Very low68.2Low229 Ų229101.5 Ų101.5100%1.12855%0.545SS*.  047.40-66.2-175.1-85.100111.1
2T58.7Low69Low60 Ų60100.4 Ų100.437%0.36854%0.537SS..  trans-87.7-20176.231.90000112.6A4 L5 T6 L27T2-A4 PolarHBondContact O-N 3.01Å; T2-L5 WeakPolarHBondContact O-CB 3.37Å; T2-L5 PolarHBondContact O-N 3.13Å; T2-L5 VanDerWaalsContact O-N 3.13Å; T2-T6 PolarHBondContact O-N 3.45Å; T2-T6 VanDerWaalsContact O-N 3.12Å; T2-L27 HydrophobicContact CG2-CB 4.23Å; T2-L27 HydrophobicContact CG2-CD1 4.31Å
3S58.1Low68.4Low77 Ų77101.6 Ų101.654%0.53855%0.554SS.*Hα-helixtrans-62.7-33.3-172.7-1680000114.9T6 Q7S3-T6 WeakPolarHBondContact CA-OG1 3.29Å; S3-T6 PolarHBondContact O-OG1 3.31Å; S3-Q7 WeakPolarHBondContact O-CB 3.48Å; S3-Q7 WeakPolarHBondContact O-CG 3.44Å; S3-Q7 PolarHBondContact O-N 3.27Å
4A67.6Low68.6Low79 Ų79105.6 Ų105.665%0.65357%0.574SS**Hα-helixtrans-71.5-30.8176.900000112.8T2 G8T2-A4 PolarHBondContact O-N 3.01Å; A4-G8 PolarHBondContact O-N 2.93Å
5L73.1Confident68.7Low116 Ų116102.3 Ų102.361%0.60755%0.554SS**Hα-helixtrans-72.8-43.7175.2-95.7138.1000111T2 G8 L9T2-L5 WeakPolarHBondContact O-CB 3.37Å; T2-L5 PolarHBondContact O-N 3.13Å; T2-L5 VanDerWaalsContact O-N 3.13Å; L5-G8 PolarHBondContact O-N 3.23Å; L5-L9 PolarHBondContact O-N 3.05Å
6T73.8Confident69.1Low13 Ų13103.4 Ų103.48%0.0856%0.558CS.*Hα-helixtrans-66.7-40179.1600000112T2 S3 G8 L9 E10 Y18 A28T2-T6 PolarHBondContact O-N 3.45Å; T2-T6 VanDerWaalsContact O-N 3.12Å; S3-T6 WeakPolarHBondContact CA-OG1 3.29Å; S3-T6 PolarHBondContact O-OG1 3.31Å; T6-G8 PolarHBondContact O-N 3.22Å; T6-L9 WeakPolarHBondContact O-CB 3.5Å; T6-L9 PolarHBondContact O-N 2.93Å; T6-L9 VanDerWaalsContact O-N 3.08Å; T6-E10 WeakPolarHBondContact O-CG 3.41Å; T6-E10 PolarHBondContact O-N 3.08Å; T6-Y18 WeakPolarHBondContact CB-OH 3.46Å; T6-Y18 HydrophobicContact CG2-CD2 4.44Å; T6-Y18 HydrophobicContact CG2-CE2 3.51Å; T6-A28 HydrophobicContact CG2-CB 3.59Å
7Q72.3Confident69.9Low119 Ų11998.6 Ų98.656%0.55654%0.538SS*.Hα-helixtrans-60.4-30.5173.3-80.5-176.5-61.800113.5S3 R11S3-Q7 WeakPolarHBondContact O-CB 3.48Å; S3-Q7 WeakPolarHBondContact O-CG 3.44Å; S3-Q7 PolarHBondContact O-N 3.27Å; Q7-R11 VanDerWaalsContact O-CG 3.29Å; Q7-R11 WeakPolarHBondContact O-CG 3.37Å
8G77Confident70.7Confident44 Ų4494.6 Ų94.645%0.45451%0.514SS..Hα-helixtrans-71.2-37.5175.600000112.5A4 L5 T6A4-G8 PolarHBondContact O-N 2.93Å; L5-G8 PolarHBondContact O-N 3.23Å; T6-G8 PolarHBondContact O-N 3.22Å
9L77.6Confident71.4Confident52 Ų5291.5 Ų91.527%0.27250%0.497SS..Hα-helixtrans-69.8-47.1176.6-67.9162.4000110.3L5 T6 R11 I12 Q15 Y18 V20L5-L9 PolarHBondContact O-N 3.05Å; T6-L9 WeakPolarHBondContact O-CB 3.5Å; T6-L9 PolarHBondContact O-N 2.93Å; T6-L9 VanDerWaalsContact O-N 3.08Å; L9-R11 PolarHBondContact O-N 3.15Å; L9-I12 HydrophobicContact CD2-CD1 4.17Å; L9-I12 WeakPolarHBondContact O-CB 3.31Å; L9-I12 WeakPolarHBondContact O-CG1 3.33Å; L9-I12 PolarHBondContact O-N 3.35Å; L9-Q15 VanDerWaalsContact C-NE2 3.34Å; L9-Q15 VanDerWaalsContact C-OE1 3.27Å; L9-Q15 PolarHBondContact O-NE2 2.98Å; L9-Q15 VanDerWaalsContact O-NE2 3.15Å; L9-Q15 PolarHBondContact O-OE1 2.74Å; L9-Y18 HydrophobicContact CB-CD1 4.29Å; L9-Y18 HydrophobicContact CB-CG 4.05Å; L9-Y18 HydrophobicContact CD1-CD2 3.96Å; L9-Y18 HydrophobicContact CD1-CG 4.15Å; L9-V20 HydrophobicContact CD1-CG2 3.81Å
10E68.8Low72.1Confident109 Ų10988.3 Ų88.351%0.50948%0.48SS..Hα-helixtrans-58.6-19.2178.3-68.9177.6102.900114.5T6 I12 Y18T6-E10 WeakPolarHBondContact O-CG 3.41Å; T6-E10 PolarHBondContact O-N 3.08Å; E10-I12 VanDerWaalsContact C-N 3.32Å; E10-Y18 HydrophobicContact CG-CD1 4.17Å; E10-Y18 HydrophobicContact CG-CE1 3.48Å; E10-Y18 VanDerWaalsContact CG-CE1 3.48Å
11R74.8Confident72.6Confident219 Ų21986.6 Ų86.683%0.82647%0.47SS*.THydrogen-bonded Turntrans-84.7-1.5176.4-71.1177.479.4173.86.4113.9Q7 L9 P13Q7-R11 VanDerWaalsContact O-CG 3.29Å; Q7-R11 WeakPolarHBondContact O-CG 3.37Å; L9-R11 PolarHBondContact O-N 3.15Å; R11-P13 WeakPolarHBondContact O-CD 3.35Å
12I77.8Confident74.2Confident88 Ų8878.1 Ų78.145%0.45143%0.434SS..SBendtrans-77.1119.8177.4-61.3174.8000108.6L9 E10 Q15L9-I12 HydrophobicContact CD2-CD1 4.17Å; L9-I12 WeakPolarHBondContact O-CB 3.31Å; L9-I12 WeakPolarHBondContact O-CG1 3.33Å; L9-I12 PolarHBondContact O-N 3.35Å; E10-I12 VanDerWaalsContact C-N 3.32Å; I12-Q15 HydrophobicContact CB-CB 4.17Å; I12-Q15 HydrophobicContact CG2-CB 4.41Å; I12-Q15 VanDerWaalsContact O-CB 3.31Å; I12-Q15 WeakPolarHBondContact O-CB 3.47Å; I12-Q15 PolarHBondContact O-N 3.12Å
13P61.4Low75.2Confident116 Ų11684.9 Ų84.975%0.75346%0.461SS*.THydrogen-bonded Turntrans-65141.7175.927.5-32.6000110R11 Q15R11-P13 WeakPolarHBondContact O-CD 3.35Å; P13-Q15 VanDerWaalsContact C-N 3.28Å; P13-Q15 PolarHBondContact O-N 3.47Å
14D70.7Confident75.8Confident157 Ų15783.4 Ų83.484%0.8446%0.458SS*.THydrogen-bonded Turntrans70.114.4-175.8-149.5-119000115.3L16D14-L16 PolarHBondContact O-N 3.19Å
15Q70.4Confident76.2Confident57 Ų5782.3 Ų82.327%0.26645%0.449SS..  trans-73.9110.9175.5-171.5177.6-83.300111.4L9 I12 P13 G17 Y18L9-Q15 VanDerWaalsContact C-NE2 3.34Å; L9-Q15 VanDerWaalsContact C-OE1 3.27Å; L9-Q15 PolarHBondContact O-NE2 2.98Å; L9-Q15 VanDerWaalsContact O-NE2 3.15Å; L9-Q15 PolarHBondContact O-OE1 2.74Å; I12-Q15 HydrophobicContact CB-CB 4.17Å; I12-Q15 HydrophobicContact CG2-CB 4.41Å; I12-Q15 VanDerWaalsContact O-CB 3.31Å; I12-Q15 WeakPolarHBondContact O-CB 3.47Å; I12-Q15 PolarHBondContact O-N 3.12Å; P13-Q15 VanDerWaalsContact C-N 3.28Å; P13-Q15 PolarHBondContact O-N 3.47Å; Q15-G17 VanDerWaalsContact CG-O 3.25Å; Q15-G17 WeakPolarHBondContact CG-O 3.25Å; Q15-Y18 VanDerWaalsContact NE2-CD1 3.28Å
16L74.9Confident76.6Confident120 Ų12079.5 Ų79.563%0.62844%0.436SS*.  trans-76.6-23.1174-63.5173.9000113.4D14 G31 D32D14-L16 PolarHBondContact O-N 3.19Å; L16-G31 WeakPolarHBondContact O-CA 3.49Å; L16-D32 PolarHBondContact O-N 2.74Å; L16-D32 VanDerWaalsContact O-N 3.16Å
17G83Confident77Confident21 Ų2183.2 Ų83.222%0.21646%0.455CS..EExtended strand (participates in β ladder)trans-179.2167.1179.100000112Q15 S30Q15-G17 VanDerWaalsContact CG-O 3.25Å; Q15-G17 WeakPolarHBondContact CG-O 3.25Å; G17-S30 CarbonylContact C-O 3.48Å; G17-S30 WeakPolarHBondContact CA-O 3.26Å
18Y83.4Confident77.4Confident27 Ų2778.3 Ų78.311%0.10644%0.435CS..EExtended strand (participates in β ladder)trans-138.7153.5173.166.4-93.2000110.9T6 L9 E10 Q15 V20 A28 S29 S30T6-Y18 WeakPolarHBondContact CB-OH 3.46Å; T6-Y18 HydrophobicContact CG2-CD2 4.44Å; T6-Y18 HydrophobicContact CG2-CE2 3.51Å; L9-Y18 HydrophobicContact CB-CD1 4.29Å; L9-Y18 HydrophobicContact CB-CG 4.05Å; L9-Y18 HydrophobicContact CD1-CD2 3.96Å; L9-Y18 HydrophobicContact CD1-CG 4.15Å; E10-Y18 HydrophobicContact CG-CD1 4.17Å; E10-Y18 HydrophobicContact CG-CE1 3.48Å; E10-Y18 VanDerWaalsContact CG-CE1 3.48Å; Q15-Y18 VanDerWaalsContact NE2-CD1 3.28Å; Y18-V20 HydrophobicContact CD2-CG2 4.26Å; Y18-A28 HydrophobicContact CE2-CB 4.1Å; Y18-S29 CarbonylContact O-C 3.58Å; Y18-S29 VanDerWaalsContact O-CA 3.26Å; Y18-S29 WeakPolarHBondContact O-CA 3.03Å; Y18-S30 PolarHBondContact N-O 2.91Å; Y18-S30 PolarHBondContact O-N 2.97Å
19L85.1Confident77.5Confident35 Ų3577.8 Ų77.818%0.18343%0.425CS..EExtended strand (participates in β ladder)trans-141.7122178.4-170.7117.1000108.7L21 A28 L33 A40 I43L19-L21 HydrophobicContact CD2-CD1 3.42Å; L19-L21 VanDerWaalsContact CD2-CD1 3.42Å; L19-L21 HydrophobicContact CD2-CD2 3.91Å; L19-L21 HydrophobicContact CD2-CG 3.47Å; L19-L21 VanDerWaalsContact CD2-CG 3.47Å; L19-L21 HydrophobicContact CG-CG 4.4Å; L19-A28 CarbonylContact C-O 3.5Å; L19-A28 WeakPolarHBondContact CA-O 3.37Å; L19-L33 HydrophobicContact CB-CB 4.45Å; L19-L33 HydrophobicContact CB-CD1 4.22Å; L19-L33 HydrophobicContact CD1-CB 4.37Å; L19-A40 HydrophobicContact CD1-CB 4.26Å; L19-A40 HydrophobicContact CD2-CB 4.1Å; L19-I43 HydrophobicContact CD2-CD1 4.26Å
20V84.8Confident77.7Confident27 Ų2776.9 Ų76.916%0.16442%0.422CS..EExtended strand (participates in β ladder)trans-109.4117.8177.9-176.20000107.7L9 Y18 L27 A28L9-V20 HydrophobicContact CD1-CG2 3.81Å; Y18-V20 HydrophobicContact CD2-CG2 4.26Å; V20-L27 HydrophobicContact CB-CB 4.41Å; V20-L27 HydrophobicContact CG1-CB 4.11Å; V20-L27 HydrophobicContact CG1-CD1 4.37Å; V20-L27 PolarHBondContact O-N 2.84Å; V20-A28 HydrophobicContact CB-CB 4.1Å; V20-A28 HydrophobicContact CG2-CB 4.15Å; V20-A28 PolarHBondContact N-O 3.16Å; V20-A28 PolarHBondContact O-N 3.03Å
21L83Confident78.1Confident53 Ų5373.6 Ų73.628%0.27742%0.418SS..EExtended strand (participates in β ladder)trans-110.7143.1179.2-68.2161.2000110.6L19 A25 V26 A40 I43L19-L21 HydrophobicContact CD2-CD1 3.42Å; L19-L21 VanDerWaalsContact CD2-CD1 3.42Å; L19-L21 HydrophobicContact CD2-CD2 3.91Å; L19-L21 HydrophobicContact CD2-CG 3.47Å; L19-L21 VanDerWaalsContact CD2-CG 3.47Å; L19-L21 HydrophobicContact CG-CG 4.4Å; L21-A25 CarbonylContact C-O 3.55Å; L21-A25 WeakPolarHBondContact CA-O 3.4Å; L21-V26 HydrophobicContact CD2-CB 4.46Å; L21-V26 HydrophobicContact CD2-CG2 3.77Å; L21-A40 HydrophobicContact CD2-CB 3.68Å; L21-I43 HydrophobicContact CD1-CB 4.35Å; L21-I43 HydrophobicContact CD1-CG2 4.03Å
22S81.8Confident78Confident51 Ų5169.2 Ų69.236%0.35741%0.411SS..EExtended strand (participates in β ladder)trans-137.9124.3168.7-176.30000109.9G24 A25S22-G24 PolarHBondContact O-N 3.32Å; S22-A25 PolarHBondContact N-O 2.78Å; S22-A25 PolarHBondContact O-N 3.37Å
23E79.6Confident77.6Confident203 Ų20367.8 Ų67.895%0.94940%0.404SS*.THydrogen-bonded Turntrans50.532.4-179.9-61.1-171.794.100114.1A25E23-A25 VanDerWaalsContact C-N 3.33Å
24G70.9Confident78.2Confident45 Ų4568.3 Ų68.346%0.46440%0.396SS..THydrogen-bonded Turntrans84.7-1.2-178.500000115.2S22S22-G24 PolarHBondContact O-N 3.32Å
25A76.9Confident78.1Confident56 Ų5667 Ų6746%0.46339%0.389SS..EExtended strand (participates in β ladder)trans-99.7142.9172.500000111.6L21 S22 E23 L27L21-A25 CarbonylContact C-O 3.55Å; L21-A25 WeakPolarHBondContact CA-O 3.4Å; S22-A25 PolarHBondContact N-O 2.78Å; S22-A25 PolarHBondContact O-N 3.37Å; E23-A25 VanDerWaalsContact C-N 3.33Å; A25-L27 PolarHBondContact O-N 3.44Å
26V80Confident78.4Confident58 Ų5867.8 Ų67.835%0.35240%0.395SS..EExtended strand (participates in β ladder)trans-74.2116.9173.4-178.10000109L21 A40L21-V26 HydrophobicContact CD2-CB 4.46Å; L21-V26 HydrophobicContact CD2-CG2 3.77Å; V26-A40 HydrophobicContact CG2-CB 3.43Å; V26-A40 VanDerWaalsContact CG2-CB 3.43Å
27L82.2Confident78.6Confident90 Ų9069 Ų6947%0.47140%0.398SS..EExtended strand (participates in β ladder)trans-88.8-33.9173.9-69.5-172.5000112.7T2 V20 A25T2-L27 HydrophobicContact CG2-CB 4.23Å; T2-L27 HydrophobicContact CG2-CD1 4.31Å; V20-L27 HydrophobicContact CB-CB 4.41Å; V20-L27 HydrophobicContact CG1-CB 4.11Å; V20-L27 HydrophobicContact CG1-CD1 4.37Å; V20-L27 PolarHBondContact O-N 2.84Å; A25-L27 PolarHBondContact O-N 3.44Å
28A80.8Confident78.6Confident17 Ų1775.8 Ų75.814%0.1442%0.424CS..EExtended strand (participates in β ladder)trans-157141.2175.500000109.2T6 Y18 L19 V20T6-A28 HydrophobicContact CG2-CB 3.59Å; Y18-A28 HydrophobicContact CE2-CB 4.1Å; L19-A28 CarbonylContact C-O 3.5Å; L19-A28 WeakPolarHBondContact CA-O 3.37Å; V20-A28 HydrophobicContact CB-CB 4.1Å; V20-A28 HydrophobicContact CG2-CB 4.15Å; V20-A28 PolarHBondContact N-O 3.16Å; V20-A28 PolarHBondContact O-N 3.03Å
29S80.4Confident78.5Confident33 Ų3375.7 Ų75.723%0.23143%0.429CS..EExtended strand (participates in β ladder)trans-142.1153.9171.656.10000109.5Y18 L33 N35Y18-S29 CarbonylContact O-C 3.58Å; Y18-S29 VanDerWaalsContact O-CA 3.26Å; Y18-S29 WeakPolarHBondContact O-CA 3.03Å; S29-L33 WeakPolarHBondContact CB-O 3.16Å; S29-N35 PolarHBondContact OG-N 3.42Å
30S80.2Confident78.4Confident32 Ų3274.2 Ų74.222%0.22442%0.421CS..EExtended strand (participates in β ladder)trans-162.9156.4-179.7-167.90000111.4G17 Y18G17-S30 CarbonylContact C-O 3.48Å; G17-S30 WeakPolarHBondContact CA-O 3.26Å; Y18-S30 PolarHBondContact N-O 2.91Å; Y18-S30 PolarHBondContact O-N 2.97Å
31G78.6Confident78.5Confident40 Ų4075.8 Ų75.841%0.41243%0.434SS..EExtended strand (participates in β ladder)trans76-141.517900000111.9L16 L33 E34L16-G31 WeakPolarHBondContact O-CA 3.49Å; G31-L33 PolarHBondContact O-N 3.14Å; G31-L33 VanDerWaalsContact O-N 3.14Å; G31-E34 WeakPolarHBondContact O-CB 3.34Å; G31-E34 PolarHBondContact O-N 2.88Å
32D72Confident78.6Confident128 Ų12875.7 Ų75.768%0.68444%0.441SS*.THydrogen-bonded Turntrans-65.1-15.3179.2-160.8-113.4000113.5L16L16-D32 PolarHBondContact O-N 2.74Å; L16-D32 VanDerWaalsContact O-N 3.16Å
33L70.3Confident78.8Confident57 Ų5776.6 Ų76.630%0.29844%0.44SS..THydrogen-bonded Turntrans-98.87.1176.7-62.9172.4000112.8L19 S29 G31 N35 A39L19-L33 HydrophobicContact CB-CB 4.45Å; L19-L33 HydrophobicContact CB-CD1 4.22Å; L19-L33 HydrophobicContact CD1-CB 4.37Å; S29-L33 WeakPolarHBondContact CB-O 3.16Å; G31-L33 PolarHBondContact O-N 3.14Å; G31-L33 VanDerWaalsContact O-N 3.14Å; L33-N35 PolarHBondContact O-N 3.14Å; L33-A39 HydrophobicContact CD2-CB 4.35Å
34E73.1Confident79Confident127 Ų12768.9 Ų68.959%0.59341%0.409SS*.THydrogen-bonded Turntrans-65.6127.7177.7-170.9174.1102.900110.3G31 D36G31-E34 WeakPolarHBondContact O-CB 3.34Å; G31-E34 PolarHBondContact O-N 2.88Å; E34-D36 PolarHBondContact O-N 3.06Å; E34-D36 VanDerWaalsContact O-N 3.14Å
35N68.2Low79.8Confident130 Ų13072.6 Ų72.670%0.69541%0.414SS*.THydrogen-bonded Turntrans61.314.8179.6-162.156.1000116.3S29 L33 E37S29-N35 PolarHBondContact OG-N 3.42Å; L33-N35 PolarHBondContact O-N 3.14Å; N35-E37 PolarHBondContact O-N 3.1Å; N35-E37 VanDerWaalsContact O-N 3.1Å
36D76.6Confident80.2Confident73 Ų7374.9 Ų74.939%0.3942%0.418SS..  trans-88.875.3-179.8-134.5-70.5000111.6E34 Q38 A39 A40E34-D36 PolarHBondContact O-N 3.06Å; E34-D36 VanDerWaalsContact O-N 3.14Å; D36-Q38 PolarHBondContact O-N 3.5Å; D36-A39 HydrophobicContact CB-CB 4.03Å; D36-A39 PolarHBondContact O-N 3.41Å; D36-A39 PolarHBondContact OD1-N 3.08Å; D36-A40 PolarHBondContact O-N 3.27Å; D36-A40 VanDerWaalsContact O-N 3.08Å
37E80.8Confident80.3Confident147 Ų14775 Ų7569%0.68742%0.419SS*.Hα-helixtrans-59.9-31179.3-62.9-176.398.100112.2N35 A40 S41N35-E37 PolarHBondContact O-N 3.1Å; N35-E37 VanDerWaalsContact O-N 3.1Å; E37-A40 WeakPolarHBondContact O-CB 3.41Å; E37-A40 PolarHBondContact O-N 3.21Å; E37-S41 PolarHBondContact O-N 3.18Å
38Q82.6Confident80.3Confident163 Ų16374.6 Ų74.676%0.76242%0.424SS*.Hα-helixtrans-65.1-47.2176.8-70.3-101.2101.800111D36 A40 S41 A42D36-Q38 PolarHBondContact O-N 3.5Å; Q38-A40 VanDerWaalsContact C-N 3.34Å; Q38-A40 PolarHBondContact O-N 3.45Å; Q38-S41 PolarHBondContact O-N 3.08Å; Q38-A42 WeakPolarHBondContact O-CB 3.36Å; Q38-A42 PolarHBondContact O-N 3.2Å
39A80.8Confident80.5Confident25 Ų2577.9 Ų77.921%0.20744%0.442CS..Hα-helixtrans-62.1-42.4174.900000111.6L33 D36 S41 A42 I43L33-A39 HydrophobicContact CD2-CB 4.35Å; D36-A39 HydrophobicContact CB-CB 4.03Å; D36-A39 PolarHBondContact O-N 3.41Å; D36-A39 PolarHBondContact OD1-N 3.08Å; A39-S41 PolarHBondContact O-N 3.41Å; A39-A42 PolarHBondContact O-N 2.83Å; A39-I43 WeakPolarHBondContact O-CB 3.43Å; A39-I43 WeakPolarHBondContact O-CG1 3.47Å; A39-I43 PolarHBondContact O-N 3.42Å
40A83.9Confident80.5Confident3 Ų377.6 Ų77.63%0.02544%0.442CS..Hα-helixtrans-56.4-47.7174.400000112.7L19 L21 V26 D36 E37 Q38 S44L19-A40 HydrophobicContact CD1-CB 4.26Å; L19-A40 HydrophobicContact CD2-CB 4.1Å; L21-A40 HydrophobicContact CD2-CB 3.68Å; V26-A40 HydrophobicContact CG2-CB 3.43Å; V26-A40 VanDerWaalsContact CG2-CB 3.43Å; D36-A40 PolarHBondContact O-N 3.27Å; D36-A40 VanDerWaalsContact O-N 3.08Å; E37-A40 WeakPolarHBondContact O-CB 3.41Å; E37-A40 PolarHBondContact O-N 3.21Å; Q38-A40 VanDerWaalsContact C-N 3.34Å; Q38-A40 PolarHBondContact O-N 3.45Å; A40-S44 WeakPolarHBondContact O-CB 3.17Å; A40-S44 PolarHBondContact O-N 3.19Å
41S85Confident80.2Confident61 Ų6178.4 Ų78.443%0.42745%0.447SS..Hα-helixtrans-63.7-48.8177.6-168.50000111.3E37 Q38 A39 I43 S44 E45E37-S41 PolarHBondContact O-N 3.18Å; Q38-S41 PolarHBondContact O-N 3.08Å; A39-S41 PolarHBondContact O-N 3.41Å; S41-I43 VanDerWaalsContact C-N 3.33Å; S41-I43 PolarHBondContact O-N 3.35Å; S41-S44 WeakPolarHBondContact O-CB 3.46Å; S41-S44 PolarHBondContact O-N 2.91Å; S41-S44 VanDerWaalsContact O-N 3.15Å; S41-E45 PolarHBondContact O-N 2.85Å
42A85.8Confident79.8Confident51 Ų5179.5 Ų79.542%0.42146%0.458SS..Hα-helixtrans-60.2-41.3179.800000112.2Q38 A39 L46Q38-A42 WeakPolarHBondContact O-CB 3.36Å; Q38-A42 PolarHBondContact O-N 3.2Å; A39-A42 PolarHBondContact O-N 2.83Å; A42-L46 VanDerWaalsContact O-CB 3.3Å; A42-L46 WeakPolarHBondContact O-CB 3.39Å; A42-L46 PolarHBondContact O-N 3.15Å
43I85.5Confident79.6Confident69 Ų6980 Ų8035%0.35446%0.455SS..Hα-helixtrans-65.3-45.2175.3-68.8167.2000110.5L19 L21 A39 S41 E45 L46 V47L19-I43 HydrophobicContact CD2-CD1 4.26Å; L21-I43 HydrophobicContact CD1-CB 4.35Å; L21-I43 HydrophobicContact CD1-CG2 4.03Å; A39-I43 WeakPolarHBondContact O-CB 3.43Å; A39-I43 WeakPolarHBondContact O-CG1 3.47Å; A39-I43 PolarHBondContact O-N 3.42Å; S41-I43 VanDerWaalsContact C-N 3.33Å; S41-I43 PolarHBondContact O-N 3.35Å; I43-E45 PolarHBondContact O-N 2.85Å; I43-L46 WeakPolarHBondContact O-CB 3.31Å; I43-L46 PolarHBondContact O-N 3.25Å; I43-V47 HydrophobicContact CG2-CG2 4.27Å; I43-V47 WeakPolarHBondContact O-CB 3.48Å; I43-V47 VanDerWaalsContact O-CG2 3.31Å; I43-V47 WeakPolarHBondContact O-CG2 3.34Å; I43-V47 PolarHBondContact O-N 3.49Å
44S84.6Confident79.2Confident41 Ų4183.5 Ų83.529%0.28746%0.464SS..Hα-helixtrans-60.7-45178.5-167.40000111.6A40 S41 V47 S48A40-S44 WeakPolarHBondContact O-CB 3.17Å; A40-S44 PolarHBondContact O-N 3.19Å; S41-S44 WeakPolarHBondContact O-CB 3.46Å; S41-S44 PolarHBondContact O-N 2.91Å; S41-S44 VanDerWaalsContact O-N 3.15Å; S44-V47 PolarHBondContact O-N 3.09Å; S44-S48 WeakPolarHBondContact O-CB 3.19Å; S44-S48 PolarHBondContact O-N 3.16Å
45E87Confident78.4Confident124 Ų12484.2 Ų84.258%0.57947%0.471SS*.Hα-helixtrans-63.8-41.7174.4-74.5-170.388.500112.1S41 I43 S48 T49S41-E45 PolarHBondContact O-N 2.85Å; I43-E45 PolarHBondContact O-N 2.85Å; E45-S48 PolarHBondContact O-N 3.36Å; E45-T49 WeakPolarHBondContact O-CB 3.42Å; E45-T49 PolarHBondContact O-N 2.89Å; E45-T49 PolarHBondContact O-OG1 2.94Å
46L85.8Confident77.6Confident104 Ų10485.9 Ų85.955%0.54547%0.474SS..Hα-helixtrans-60.3-48.4175-106.4162.7000111.8A42 I43 T49 A50A42-L46 VanDerWaalsContact O-CB 3.3Å; A42-L46 WeakPolarHBondContact O-CB 3.39Å; A42-L46 PolarHBondContact O-N 3.15Å; I43-L46 WeakPolarHBondContact O-CB 3.31Å; I43-L46 PolarHBondContact O-N 3.25Å; L46-T49 PolarHBondContact O-N 3.37Å; L46-A50 VanDerWaalsContact O-CB 3.23Å; L46-A50 WeakPolarHBondContact O-CB 3.24Å; L46-A50 PolarHBondContact O-N 3.46Å
47V82.7Confident76.6Confident60 Ų6094.8 Ų94.836%0.36450%0.502SS..Hα-helixtrans-66.4-42.4179.3172.10000110.6I43 S44 A50 C51I43-V47 HydrophobicContact CG2-CG2 4.27Å; I43-V47 WeakPolarHBondContact O-CB 3.48Å; I43-V47 VanDerWaalsContact O-CG2 3.31Å; I43-V47 WeakPolarHBondContact O-CG2 3.34Å; I43-V47 PolarHBondContact O-N 3.49Å; S44-V47 PolarHBondContact O-N 3.09Å; V47-A50 PolarHBondContact O-N 2.95Å; V47-C51 WeakPolarHBondContact O-CB 3.43Å; V47-C51 PolarHBondContact O-N 2.92Å
48S82.2Confident75.4Confident82 Ų8289.5 Ų89.557%0.57349%0.487SS*.Hα-helixtrans-61-45.8175.9-1750000111.1S44 E45 C51 G52S44-S48 WeakPolarHBondContact O-CB 3.19Å; S44-S48 PolarHBondContact O-N 3.16Å; E45-S48 PolarHBondContact O-N 3.36Å; S48-C51 PolarHBondContact O-N 2.97Å; S48-G52 PolarHBondContact O-N 2.75Å
49T84.5Confident74.2Confident85 Ų8590.9 Ų90.952%0.52150%0.496SS..Hα-helixtrans-64.5-47176.7-59.30000111.1E45 L46 C51 G52 F53E45-T49 WeakPolarHBondContact O-CB 3.42Å; E45-T49 PolarHBondContact O-N 2.89Å; E45-T49 PolarHBondContact O-OG1 2.94Å; L46-T49 PolarHBondContact O-N 3.37Å; T49-C51 VanDerWaalsContact C-N 3.35Å; T49-C51 PolarHBondContact O-N 2.84Å; T49-G52 CarbonylContact O-C 3.57Å; T49-G52 PolarHBondContact O-N 3.28Å; T49-F53 WeakPolarHBondContact O-CB 3.23Å; T49-F53 PolarHBondContact O-N 2.78Å
50A80.1Confident73.2Confident27 Ų2796.2 Ų96.222%0.22352%0.521CS..Hα-helixtrans-62.4-41.417800000111.7L46 V47 F53 F63 L66L46-A50 VanDerWaalsContact O-CB 3.23Å; L46-A50 WeakPolarHBondContact O-CB 3.24Å; L46-A50 PolarHBondContact O-N 3.46Å; V47-A50 PolarHBondContact O-N 2.95Å; A50-F53 PolarHBondContact O-N 3.33Å; A50-F63 VanDerWaalsContact C-CE1 3.47Å; A50-F63 HydrophobicContact CB-CE1 3.72Å; A50-F63 HydrophobicContact CB-CZ 3.75Å; A50-F63 WeakPolarHBondContact O-CE1 3.14Å; A50-L66 HydrophobicContact CB-CD1 3.84Å
51C73.3Confident72.3Confident49 Ų49100.6 Ų100.633%0.33155%0.547SS..Hα-helixtrans-69.7-37.4177.2-171.70000111.6V47 S48 T49 F53 R54 F63V47-C51 WeakPolarHBondContact O-CB 3.43Å; V47-C51 PolarHBondContact O-N 2.92Å; S48-C51 PolarHBondContact O-N 2.97Å; T49-C51 VanDerWaalsContact C-N 3.35Å; T49-C51 PolarHBondContact O-N 2.84Å; C51-F53 VanDerWaalsContact C-N 3.31Å; C51-R54 VanDerWaalsContact O-CG 3.24Å; C51-R54 WeakPolarHBondContact O-CG 3.44Å; C51-F63 HydrophobicContact CB-CZ 3.94Å
52G71.1Confident71.3Confident63 Ų63101.2 Ų101.265%0.64955%0.55SS*.Hα-helixtrans-68-28.9173.600000113S48 T49 R54S48-G52 PolarHBondContact O-N 2.75Å; T49-G52 CarbonylContact O-C 3.57Å; T49-G52 PolarHBondContact O-N 3.28Å; G52-R54 PolarHBondContact O-N 3.45Å
53F67.5Low70.6Confident140 Ų140101.5 Ų101.561%0.61454%0.542SS*.  trans-71.850.2170.2-119-92.4000111.5T49 A50 C51 L55T49-F53 WeakPolarHBondContact O-CB 3.23Å; T49-F53 PolarHBondContact O-N 2.78Å; A50-F53 PolarHBondContact O-N 3.33Å; C51-F53 VanDerWaalsContact C-N 3.31Å; F53-L55 HydrophobicContact CD1-CD1 4Å; F53-L55 HydrophobicContact CD1-CG 4.07Å; F53-L55 HydrophobicContact CE1-CD1 4.32Å; F53-L55 HydrophobicContact CE1-CG 4.45Å; F53-L55 PolarHBondContact O-N 3.42Å
54R61.5Low70.2Confident129 Ų129108.8 Ų108.849%0.48757%0.571SS.*  trans-7078.8167.1-67.4-150.8-140.9-1676.5109.5C51 G52 H56 G58C51-R54 VanDerWaalsContact O-CG 3.24Å; C51-R54 WeakPolarHBondContact O-CG 3.44Å; G52-R54 PolarHBondContact O-N 3.45Å; R54-H56 PolarHBondContact O-N 2.81Å; R54-G58 PolarHBondContact NH1-O 3.13Å
55L56.4Low70Confident143 Ų143117.4 Ų117.475%0.74960%0.597SS**SBendtrans-57.4-23.5165.9-85.7160000111.7F53F53-L55 HydrophobicContact CD1-CD1 4Å; F53-L55 HydrophobicContact CD1-CG 4.07Å; F53-L55 HydrophobicContact CE1-CD1 4.32Å; F53-L55 HydrophobicContact CE1-CG 4.45Å; F53-L55 PolarHBondContact O-N 3.42Å
56H52.3Low69.7Low165 Ų165115.5 Ų115.576%0.76459%0.59SS**SBendtrans-113.9115.3171.3-69.882.9000109.8R54 G58R54-H56 PolarHBondContact O-N 2.81Å; H56-G58 PolarHBondContact O-N 3.35Å
57R55Low69.5Low260 Ų260115.4 Ų115.498%0.98160%0.598SS**  trans-68.148.9179.5-157.5-180-168.1-179.43.4112.1
58G55.6Low69.3Low36 Ų36116.1 Ų116.137%0.37162%0.618SS.*SBendtrans-115.5145.5-178.400000111.2R54 H56 N60R54-G58 PolarHBondContact NH1-O 3.13Å; H56-G58 PolarHBondContact O-N 3.35Å; G58-N60 PolarHBondContact O-N 3.41Å
59M58Low68.9Low192 Ų192118.4 Ų118.495%0.94663%0.628SS**SBendtrans-66.65.2-177.1-70.6160.759.700114.8
60N60.4Low68.1Low137 Ų137117.6 Ų117.673%0.73363%0.626SS**SBendtrans-102145.3-176.2-148.4-101.6000111.6G58G58-N60 PolarHBondContact O-N 3.41Å
61V63.5Low67.3Low94 Ų94122.9 Ų122.957%0.5765%0.65SS**  trans-64.4123.8176.1-177.50000108.1F63V61-F63 WeakPolarHBondContact CG1-O 3.22Å; V61-F63 PolarHBondContact O-N 2.93Å
62P65.6Low66.7Low74 Ų74127.1 Ų127.148%0.48167%0.668SS.*SBendtrans-68.9-16.3-170.920.2-26.7000114.1
63F70.9Confident66.4Low58 Ų58128.7 Ų128.725%0.25466%0.659SS.*  trans-140.4141.5-17842-93.9000112.5A50 C51 V61A50-F63 VanDerWaalsContact C-CE1 3.47Å; A50-F63 HydrophobicContact CB-CE1 3.72Å; A50-F63 HydrophobicContact CB-CZ 3.75Å; A50-F63 WeakPolarHBondContact O-CE1 3.14Å; C51-F63 HydrophobicContact CB-CZ 3.94Å; V61-F63 WeakPolarHBondContact CG1-O 3.22Å; V61-F63 PolarHBondContact O-N 2.93Å
64K76.8Confident66.2Low221 Ų221129.8 Ų129.896%0.96166%0.659SS**SBendtrans-91.7-22.7172.4-66.5-177.2178179.20113
65R80.8Confident66.4Low222 Ų222126.5 Ų126.584%0.83866%0.656SS**  trans-151.2137.6179.1-178.5179-83.3-155.2-5108.9
66L80.8Confident66.8Low84 Ų84124.5 Ų124.544%0.4465%0.645SS.*  trans-118.5125.4171.3-175.8146.5000107.4A50A50-L66 HydrophobicContact CB-CD1 3.84Å
67S80.6Confident67.2Low102 Ų102123 Ų12371%0.71364%0.639SS**  trans-117.6120.817953.20000109.3
68G79.6Confident67.6Low75 Ų75114.8 Ų114.877%0.77361%0.614SS**  trans-100.1119.817100000109.8
69V73.6Confident67.7Low130 Ų130117.2 Ų117.279%0.78862%0.622SS**  trans-97.9116169.1-77.60000108.2L71V69-L71 PolarHBondContact O-N 3.35Å; V69-L71 VanDerWaalsContact O-N 3.13Å
70S67.5Low67.6Low69 Ų69115.5 Ų115.548%0.48361%0.611SS.*  trans-73.9104.1173.9-174.10000108.6L72 Q73 W74S70-L72 PolarHBondContact O-N 2.89Å; S70-Q73 PolarHBondContact O-N 3.07Å; S70-Q73 VanDerWaalsContact O-N 3.14Å; S70-W74 PolarHBondContact O-N 3.29Å
71L63.6Low67.2Low138 Ų138113.9 Ų113.972%0.72361%0.61SS**Hα-helixtrans-59.2-31.4-178.5-156.486.3000111.8V69 S75V69-L71 PolarHBondContact O-N 3.35Å; V69-L71 VanDerWaalsContact O-N 3.13Å; L71-S75 VanDerWaalsContact O-CB 3.22Å; L71-S75 WeakPolarHBondContact O-CB 3.22Å; L71-S75 PolarHBondContact O-N 2.81Å
72L60Low66.3Low137 Ų137123.8 Ų123.872%0.71764%0.637SS**Hα-helixtrans-66.9-45.1175.9-94.2145.3000112.2S70 S75 L76S70-L72 PolarHBondContact O-N 2.89Å; L72-S75 PolarHBondContact O-N 2.75Å; L72-L76 WeakPolarHBondContact O-CG 3.3Å; L72-L76 PolarHBondContact O-N 3.42Å
73Q63.9Low66.4Low97 Ų97126.3 Ų126.345%0.45364%0.644SS.*Hα-helixtrans-69.9-42.4177.9-171.9163.6-25.600111.3S70 S75 L76 E77S70-Q73 PolarHBondContact O-N 3.07Å; S70-Q73 VanDerWaalsContact O-N 3.14Å; Q73-S75 VanDerWaalsContact C-N 3.27Å; Q73-S75 PolarHBondContact O-N 3.44Å; Q73-L76 PolarHBondContact O-N 2.81Å; Q73-E77 WeakPolarHBondContact O-CB 3.26Å; Q73-E77 PolarHBondContact O-N 3.41Å
74W64.7Low66.1Low163 Ų163129.8 Ų129.862%0.61767%0.665SS**Hα-helixtrans-59.6-39.4174.3-174.385000112.2S70 N78S70-W74 PolarHBondContact O-N 3.29Å; W74-N78 VanDerWaalsContact CE2-ND2 3.3Å; W74-N78 WeakPolarHBondContact O-CB 3.38Å; W74-N78 PolarHBondContact O-N 3.14Å; W74-N78 VanDerWaalsContact O-N 3.08Å; W74-N78 PolarHBondContact O-ND2 2.57Å
75S65.2Low65.5Low59 Ų59124.8 Ų124.841%0.41365%0.649SS.*Hα-helixtrans-66.4-45.6174.9-171.10000111.4L71 L72 Q73 N78 T79L71-S75 VanDerWaalsContact O-CB 3.22Å; L71-S75 WeakPolarHBondContact O-CB 3.22Å; L71-S75 PolarHBondContact O-N 2.81Å; L72-S75 PolarHBondContact O-N 2.75Å; Q73-S75 VanDerWaalsContact C-N 3.27Å; Q73-S75 PolarHBondContact O-N 3.44Å; S75-N78 PolarHBondContact O-N 3.22Å; S75-T79 VanDerWaalsContact O-CB 3.26Å; S75-T79 WeakPolarHBondContact O-CB 3.44Å; S75-T79 PolarHBondContact O-N 3.19Å; S75-T79 PolarHBondContact O-OG1 2.8Å
76L64.3Low64.6Low101 Ų101119.1 Ų119.153%0.52964%0.637SS.*Hα-helixtrans-59.6-48.8177.4-79.3161.3000111.1L72 Q73 N78 T79 H80L72-L76 WeakPolarHBondContact O-CG 3.3Å; L72-L76 PolarHBondContact O-N 3.42Å; Q73-L76 PolarHBondContact O-N 2.81Å; L76-N78 VanDerWaalsContact C-N 3.32Å; L76-N78 PolarHBondContact O-N 2.94Å; L76-T79 PolarHBondContact O-N 2.8Å; L76-T79 VanDerWaalsContact O-N 3.07Å; L76-H80 PolarHBondContact O-CD2 2.95Å; L76-H80 PolarHBondContact O-N 2.9Å; L76-H80 VanDerWaalsContact O-N 3.16Å
77E61.8Low63.6Low134 Ų134121.3 Ų121.363%0.62665%0.65SS**Hα-helixtrans-64.4-33.4-178.2-143.6159.279.300112.7Q73Q73-E77 WeakPolarHBondContact O-CB 3.26Å; Q73-E77 PolarHBondContact O-N 3.41Å
78N62.2Low62.5Low87 Ų87122.5 Ų122.547%0.46565%0.646SS.*Hα-helixtrans-81.4-21.4172.4-90.8-80.5000114.5W74 S75 L76W74-N78 VanDerWaalsContact CE2-ND2 3.3Å; W74-N78 WeakPolarHBondContact O-CB 3.38Å; W74-N78 PolarHBondContact O-N 3.14Å; W74-N78 VanDerWaalsContact O-N 3.08Å; W74-N78 PolarHBondContact O-ND2 2.57Å; S75-N78 PolarHBondContact O-N 3.22Å; L76-N78 VanDerWaalsContact C-N 3.32Å; L76-N78 PolarHBondContact O-N 2.94Å
79T58.8Low61.3Low87 Ų87125.9 Ų125.953%0.53464%0.636SS.*Hα-helixtrans-87.6-16.3-178.3-48.90000112.3S75 L76 C81S75-T79 VanDerWaalsContact O-CB 3.26Å; S75-T79 WeakPolarHBondContact O-CB 3.44Å; S75-T79 PolarHBondContact O-N 3.19Å; S75-T79 PolarHBondContact O-OG1 2.8Å; L76-T79 PolarHBondContact O-N 2.8Å; L76-T79 VanDerWaalsContact O-N 3.07Å; T79-C81 PolarHBondContact O-N 2.81Å
80H54.9Low60.3Low157 Ų157125.6 Ų125.673%0.72763%0.625SS**THydrogen-bonded Turntrans-72.92.6172.7-82.1-73.5000114.5L76L76-H80 PolarHBondContact O-CD2 2.95Å; L76-H80 PolarHBondContact O-N 2.9Å; L76-H80 VanDerWaalsContact O-N 3.16Å
81C52.9Low59.7Low103 Ų103130.3 Ų130.370%0.69664%0.637SS**  trans-104.662.8169.7-68.20000111.6T79T79-C81 PolarHBondContact O-N 2.81Å
82W44.6Very low59.4Low301 Ų301129.6 Ų129.6100%1.1463%0.629SS**  trans-143.40159.1-71.299.4000110.6

Retrieved 82 of 82 residues in 88.6 ms (Link to these results)