A0A087WVG4_HUMAN Loading...

PHD finger protein 1

AlphaFold DB , UniProt , Accession A0A087WVG4, Species HUMAN (Homo sapiens, Human), Gene PHF1, Length 54 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M45.7Very low61.4Low249 Ų249148 Ų148100%1.22781%0.814SS**  0107.60-66.1173-173.800106.9
2A59.2Low61.4Low103 Ų103142.5 Ų142.585%0.85180%0.803SS**PPolyproline II helixtrans-86.1125.4-173.600000110
3Q61.5Low61.5Low153 Ų153140 Ų14072%0.71580%0.8SS**PPolyproline II helixtrans-70.4126.6173.8-178.6173.8-28.500108.9
4P61.3Low61.9Low100 Ų100137.2 Ų137.265%0.64979%0.793SS**PPolyproline II helixtrans-66.9142.717925.7-31.7000110.3R6P4-R6 PolarHBondContact O-N 2.79Å
5P65.8Low62Low116 Ų116139.1 Ų139.175%0.75380%0.799SS**PPolyproline II helixtrans-61.4133.7176.725.6-31.9000109L7P5-L7 PolarHBondContact O-N 3.48Å
6R67.7Low62.5Low213 Ų213142.4 Ų142.480%0.80479%0.794SS**  trans-59.5102.3177.1-72.6-76.4-153.1-84.8-3.3108.4P4 S8P4-R6 PolarHBondContact O-N 2.79Å; R6-S8 PolarHBondContact O-N 3.3Å
7L62.5Low63Low162 Ų162142.9 Ų142.985%0.84880%0.795SS**  trans-58.3120.1172.8-80.8157.3000108.8P5P5-L7 PolarHBondContact O-N 3.48Å
8S65.1Low63.2Low96 Ų96138.8 Ų138.867%0.67178%0.775SS**  trans44.8102.9154.7-55.20000116.2R6 S10R6-S8 PolarHBondContact O-N 3.3Å; S8-S10 PolarHBondContact O-N 2.85Å
9R65.8Low63.5Low252 Ų252137.4 Ų137.495%0.95178%0.783SS**  trans-51.4103.7159.1176.6171.6147.4-169.5-6.5107.5G11R9-G11 PolarHBondContact O-N 2.76Å
10S60.8Low63.6Low124 Ų124134.8 Ų134.887%0.86777%0.774SS**  trans-56.782.5178.4-740000110.7S8S8-S10 PolarHBondContact O-N 2.85Å
11G60.4Low63.6Low60 Ų60134.4 Ų134.462%0.61978%0.777SS**  trans-102.836.9169.300000110.6R9 S13R9-G11 PolarHBondContact O-N 2.76Å; G11-S13 PolarHBondContact O-N 3.05Å
12A60.7Low64.8Low82 Ų82125.5 Ų125.568%0.67874%0.742SS**  trans-78.164170.700000109.1S14A12-S14 VanDerWaalsContact C-N 3.31Å; A12-S14 PolarHBondContact O-N 3.32Å
13S63.4Low65.1Low110 Ų110126.6 Ų126.677%0.76974%0.741SS**SBendtrans-76.890.3168.8-550000106.9G11G11-S13 PolarHBondContact O-N 3.05Å
14S66.3Low65.3Low101 Ų101125.5 Ų125.571%0.70674%0.744SS**  trans83.977.3173.1-44.80000115.9A12A12-S14 VanDerWaalsContact C-N 3.31Å; A12-S14 PolarHBondContact O-N 3.32Å
15L64.2Low65.5Low166 Ų166126.7 Ų126.787%0.86976%0.755SS**  trans-97.625168.1-163.174.3000112.4
16W70.2Confident65.6Low192 Ų192123.3 Ų123.373%0.72774%0.742SS**  trans-129.7121.617360.6-90.1000108.3P18W16-P18 HydrophobicContact CZ3-CB 3.99Å
17D70.4Confident65.9Low150 Ų150119.1 Ų119.180%0.80274%0.742SS**  trans-83.4124176.4-141.2-58.3000107.7A19D17-A19 PolarHBondContact O-N 2.98Å
18P67.1Low66.5Low69 Ų69122.3 Ų122.345%0.44874%0.743SS.*  trans-69.497.8174.327.5-31.5000109W16 S20W16-P18 HydrophobicContact CZ3-CB 3.99Å; P18-S20 PolarHBondContact O-N 2.8Å
19A68.3Low66.9Low112 Ų112122.8 Ų122.893%0.92674%0.744SS**SBendtrans-65.17173.900000114.2D17D17-A19 PolarHBondContact O-N 2.98Å
20S65.6Low67.8Low86 Ų86120.4 Ų120.460%0.60174%0.735SS**SBendtrans-142.8142.1-177.6-164.30000109.1P18 A22P18-S20 PolarHBondContact O-N 2.8Å; S20-A22 PolarHBondContact O-N 3.5Å
21P64.8Low69.1Low127 Ų127119.5 Ų119.583%0.82572%0.72SS**  trans-62.696.6178.325.4-33.1000109.5
22A70Confident70.6Confident61 Ų61124 Ų12450%0.50472%0.718SS.*  trans-64.7138.1173.400000108.3S20 T24S20-A22 PolarHBondContact O-N 3.5Å; A22-T24 PolarHBondContact O-N 2.81Å
23P64.8Low72.3Confident126 Ų126127.1 Ų127.182%0.81872%0.718SS**  trans-56113.8168.524.4-31.8000107S25P23-S25 PolarHBondContact O-N 2.8Å
24T65.9Low73.7Confident130 Ų130124.2 Ų124.280%0.79871%0.706SS**  trans-58.9116.7178.954.40000106.9A22 G26A22-T24 PolarHBondContact O-N 2.81Å; T24-G26 PolarHBondContact O-N 2.9Å
25S66.6Low75.1Confident125 Ų125121 Ų12187%0.87468%0.68SS**  trans-67.380.7179.1-178.90000108.4P23P23-S25 PolarHBondContact O-N 2.8Å
26G66.5Low76.5Confident46 Ų46118 Ų11847%0.47467%0.665SS.*SBendtrans57.2166.5-176.200000114.9T24 R28T24-G26 PolarHBondContact O-N 2.9Å; G26-R28 PolarHBondContact O-N 2.72Å
27P73.8Confident77.7Confident125 Ų125111 Ų11181%0.81264%0.643SS**PPolyproline II helixtrans-62.5124163.325.4-30000108.6P29P27-P29 WeakPolarHBondContact O-CD 3.41Å; P27-P29 VanDerWaalsContact O-N 3.15Å
28R75.5Confident78.9Confident229 Ų229109.3 Ų109.386%0.86463%0.633SS**PPolyproline II helixtrans-55.3120.9169.4-178.2176.5178.9-161.4-0.6107.7G26 R30G26-R28 PolarHBondContact O-N 2.72Å; R28-R30 PolarHBondContact O-N 3.47Å; R28-R30 VanDerWaalsContact O-N 3.07Å
29P73.9Confident80.2Confident105 Ų105108.3 Ų108.368%0.68263%0.631SS**PPolyproline II helixtrans-58120.1-179.7-22.932.3000109.1P27P27-P29 WeakPolarHBondContact O-CD 3.41Å; P27-P29 VanDerWaalsContact O-N 3.15Å
30R84Confident81.6Confident202 Ų202112.6 Ų112.676%0.76262%0.623SS**PPolyproline II helixtrans-77.3136172.5-62.7-173.885.5171.65.5107.3R28 W32 Q35R28-R30 PolarHBondContact O-N 3.47Å; R28-R30 VanDerWaalsContact O-N 3.07Å; R30-W32 HydrophobicContact CB-CE3 4.39Å; R30-Q35 PolarHBondContact O-OE1 2.89Å
31L89.3Confident83.2Confident106 Ų106116.4 Ų116.456%0.55563%0.625SS**PPolyproline II helixtrans-81.1116.6177.7-153.975.9000109.1Q35 V37 I51 C54L31-Q35 VanDerWaalsContact CA-OE1 3.31Å; L31-V37 HydrophobicContact CD1-CG1 4.46Å; L31-I51 HydrophobicContact CD1-CD1 3.03Å; L31-I51 HydrophobicContact CG-CD1 3.26Å; L31-I51 HydrophobicContact CD2-CD1 4.06Å; L31-I51 HydrophobicContact CD1-CG1 4.42Å; L31-I51 HydrophobicContact CB-CD1 4.48Å; L31-C54 PolarHBondContact O-SG 2.79Å; L31-C54 HydrophobicContact CD2-CB 4.44Å
32W92.1Very high84.7Confident154 Ų154117 Ų11758%0.58363%0.626SS**  trans-130.1153.3175.657.259.2000112.5R30 G34 Q35 I51 C54R30-W32 HydrophobicContact CB-CE3 4.39Å; W32-G34 PolarHBondContact O-N 3.23Å; W32-Q35 VanDerWaalsContact CD1-CB 3.4Å; W32-Q35 HydrophobicContact CG-CB 4.24Å; W32-Q35 VanDerWaalsContact N-OE1 3.16Å; W32-Q35 WeakPolarHBondContact O-CB 3.37Å; W32-Q35 PolarHBondContact O-N 3.4Å; W32-Q35 VanDerWaalsContact O-N 3.1Å; W32-I51 WeakPolarHBondContact O-CB 3.32Å; W32-C54 WeakPolarHBondContact CA-SG 3.33Å
33E95.4Very high86Confident147 Ų147118.2 Ų118.269%0.68762%0.624SS**THydrogen-bonded Turntrans-60.7136172.1-172.9176.4173.600109.7Q35 I51E33-Q35 VanDerWaalsContact C-N 3.35Å; E33-I51 CarbonylContact C-O 3.52Å; E33-I51 WeakPolarHBondContact CA-O 3.5Å
34G93.7Very high87.6Confident50 Ų50114.3 Ų114.352%0.51561%0.607SS.*THydrogen-bonded Turntrans84.8-0.6-172.500000114.8W32 I51W32-G34 PolarHBondContact O-N 3.23Å; G34-I51 PolarHBondContact N-O 3.1Å
35Q94.9Very high89.1Confident33 Ų33113.1 Ų113.115%0.15460%0.595CS.*  trans-75.3133.1174.8-163174.9-3.200111.5R30 L31 W32 E33 V37 T50 I51R30-Q35 PolarHBondContact O-OE1 2.89Å; L31-Q35 VanDerWaalsContact CA-OE1 3.31Å; W32-Q35 VanDerWaalsContact CD1-CB 3.4Å; W32-Q35 HydrophobicContact CG-CB 4.24Å; W32-Q35 VanDerWaalsContact N-OE1 3.16Å; W32-Q35 WeakPolarHBondContact O-CB 3.37Å; W32-Q35 PolarHBondContact O-N 3.4Å; W32-Q35 VanDerWaalsContact O-N 3.1Å; E33-Q35 VanDerWaalsContact C-N 3.35Å; Q35-V37 HydrophobicContact CG-CG1 4.15Å; Q35-T50 CarbonylContact O-C 3.57Å; Q35-T50 WeakPolarHBondContact O-CA 3.36Å; Q35-I51 WeakPolarHBondContact O-CG1 3.45Å; Q35-I51 PolarHBondContact O-N 2.94Å; Q35-I51 HydrophobicContact CB-CB 4.5Å; Q35-I51 HydrophobicContact CB-CD1 3.93Å; Q35-I51 HydrophobicContact CB-CG1 4.22Å
36D94.8Very high90.6Very high103 Ų103112.3 Ų112.355%0.55158%0.58SS**EExtended strand (participates in β ladder)trans-79.5131.5166.2-67.3-35000110.9L48 G49 T50D36-L48 HydrophobicContact CB-CD1 4.18Å; D36-G49 WeakPolarHBondContact CA-O 3.41Å; D36-T50 PolarHBondContact OD1-OG1 2.92Å
37V94.1Very high92.1Very high44 Ų44115 Ų11527%0.26758%0.577SS.*EExtended strand (participates in β ladder)trans-137.1155.4-177.9-67.30000111.6L31 Q35 L48 G49 I51L31-V37 HydrophobicContact CD1-CG1 4.46Å; Q35-V37 HydrophobicContact CG-CG1 4.15Å; V37-L48 WeakPolarHBondContact O-CA 3.35Å; V37-G49 WeakPolarHBondContact CG2-O 3.39Å; V37-G49 PolarHBondContact N-O 2.73Å; V37-G49 PolarHBondContact O-N 3Å; V37-I51 HydrophobicContact CG2-CG1 3.79Å; V37-I51 HydrophobicContact CG2-CD1 4.25Å; V37-I51 HydrophobicContact CG1-CG1 4.03Å; V37-I51 HydrophobicContact CG1-CD1 3.71Å
38L95.8Very high93.2Very high115 Ų115115.3 Ų115.360%0.60257%0.571SS**EExtended strand (participates in β ladder)trans-98.8103.9171.1-66.8173.6000109.3L46 Y47 L48L38-L46 HydrophobicContact CB-CB 4.32Å; L38-L46 HydrophobicContact CB-CD1 4.41Å; L38-L46 HydrophobicContact CB-CD2 4.38Å; L38-L46 HydrophobicContact CD1-CD1 4.32Å; L38-Y47 CarbonylContact C-O 3.53Å; L38-Y47 WeakPolarHBondContact CA-O 3.39Å; L38-L48 HydrophobicContact CD2-CB 4.22Å; L38-L48 HydrophobicContact CD2-CD1 4.1Å
39A94.8Very high94.2Very high49 Ų49105.9 Ų105.941%0.40555%0.545SS..EExtended strand (participates in β ladder)trans-87.1131.3177.400000110.6L46 Y47A39-L46 WeakPolarHBondContact O-CA 3.5Å; A39-L46 CarbonylContact O-C 3.55Å; A39-Y47 PolarHBondContact N-O 3.07Å; A39-Y47 PolarHBondContact O-N 2.88Å
40R97.7Very high95.3Very high201 Ų201104.7 Ų104.776%0.75854%0.536SS*.EExtended strand (participates in β ladder)trans-83.2125.1173.7-177.8174.6170.5177.8-1.7110.1L45 L46R40-L45 WeakPolarHBondContact CA-O 3.43Å; R40-L46 HydrophobicContact CB-CD2 3.91Å
41W98.1Very high95.8Very high167 Ų16795.9 Ų95.963%0.63350%0.504SS*.  trans-97.4174.2175.6-159.1-112.9000112.2D43 G44 L45 Y47W41-D43 WeakPolarHBondContact CB-OD1 3.42Å; W41-D43 PolarHBondContact O-N 2.85Å; W41-G44 PolarHBondContact O-N 2.69Å; W41-L45 PolarHBondContact N-O 3.21Å; W41-Y47 HydrophobicContact CG-CD2 4.46Å; W41-Y47 HydrophobicContact CG-CE2 4.07Å; W41-Y47 HydrophobicContact CB-CE2 3.32Å; W41-Y47 HydrophobicContact CB-CD2 3.58Å
42T97.8Very high96Very high138 Ų13899.2 Ų99.285%0.84751%0.513SS*.THydrogen-bonded Turntrans-69-19.4-17652.40000113.8G44T42-G44 PolarHBondContact O-N 2.79Å
43D97.3Very high95.8Very high87 Ų87100.6 Ų100.647%0.46552%0.524SS..THydrogen-bonded Turntrans-77.6-5.4171.753.126.5000113.3W41 L45 Y47W41-D43 WeakPolarHBondContact CB-OD1 3.42Å; W41-D43 PolarHBondContact O-N 2.85Å; D43-L45 WeakPolarHBondContact OD1-CB 3.19Å; D43-L45 PolarHBondContact OD1-N 3.07Å; D43-Y47 PolarHBondContact OD2-OH 3.26Å
44G97.8Very high94.7Very high44 Ų4499 Ų9945%0.45453%0.528SS..SBendtrans86.9-0.4-179.500000114.7W41 T42W41-G44 PolarHBondContact O-N 2.69Å; T42-G44 PolarHBondContact O-N 2.79Å
45L98.3Very high94.8Very high105 Ų105101.5 Ų101.555%0.5553%0.529SS..  trans-86.4158.3177.6-61.7178.5000112R40 W41 D43 Y47R40-L45 WeakPolarHBondContact CA-O 3.43Å; W41-L45 PolarHBondContact N-O 3.21Å; D43-L45 WeakPolarHBondContact OD1-CB 3.19Å; D43-L45 PolarHBondContact OD1-N 3.07Å; L45-Y47 HydrophobicContact CB-CE2 3.73Å
46L98Very high94.8Very high108 Ų108105.1 Ų105.157%0.56555%0.548SS*.EExtended strand (participates in β ladder)trans-99.4132173.7-68.5177.3000109.9L38 A39 R40L38-L46 HydrophobicContact CB-CB 4.32Å; L38-L46 HydrophobicContact CB-CD1 4.41Å; L38-L46 HydrophobicContact CB-CD2 4.38Å; L38-L46 HydrophobicContact CD1-CD1 4.32Å; A39-L46 WeakPolarHBondContact O-CA 3.5Å; A39-L46 CarbonylContact O-C 3.55Å; R40-L46 HydrophobicContact CB-CD2 3.91Å
47Y97.4Very high94.8Very high104 Ų104105.2 Ų105.241%0.40855%0.548SS..EExtended strand (participates in β ladder)trans-116.3127.9-179.2-68-93.6000109.5L38 A39 W41 D43 L45 G49L38-Y47 CarbonylContact C-O 3.53Å; L38-Y47 WeakPolarHBondContact CA-O 3.39Å; A39-Y47 PolarHBondContact N-O 3.07Å; A39-Y47 PolarHBondContact O-N 2.88Å; W41-Y47 HydrophobicContact CG-CD2 4.46Å; W41-Y47 HydrophobicContact CG-CE2 4.07Å; W41-Y47 HydrophobicContact CB-CE2 3.32Å; W41-Y47 HydrophobicContact CB-CD2 3.58Å; D43-Y47 PolarHBondContact OD2-OH 3.26Å; L45-Y47 HydrophobicContact CB-CE2 3.73Å; Y47-G49 PolarHBondContact O-N 2.91Å
48L97.4Very high94.8Very high131 Ų131108.8 Ų108.869%0.68657%0.565SS**EExtended strand (participates in β ladder)trans-72.3127.7171.2-173.464.5000109.3D36 V37 L38D36-L48 HydrophobicContact CB-CD1 4.18Å; V37-L48 WeakPolarHBondContact O-CA 3.35Å; L38-L48 HydrophobicContact CD2-CB 4.22Å; L38-L48 HydrophobicContact CD2-CD1 4.1Å
49G95.8Very high94.7Very high30 Ų30108.4 Ų108.431%0.30956%0.562SS.*EExtended strand (participates in β ladder)trans-150.2155.517500000111.5D36 V37 Y47D36-G49 WeakPolarHBondContact CA-O 3.41Å; V37-G49 WeakPolarHBondContact CG2-O 3.39Å; V37-G49 PolarHBondContact N-O 2.73Å; V37-G49 PolarHBondContact O-N 3Å; Y47-G49 PolarHBondContact O-N 2.91Å
50T96.6Very high94.7Very high80 Ų80112.4 Ų112.449%0.49157%0.573SS.*EExtended strand (participates in β ladder)trans-100.3135.3177.2-46.20000109.8Q35 D36 K52Q35-T50 CarbonylContact O-C 3.57Å; Q35-T50 WeakPolarHBondContact O-CA 3.36Å; D36-T50 PolarHBondContact OD1-OG1 2.92Å; T50-K52 PolarHBondContact O-N 2.9Å
51I94.1Very high94.5Very high18 Ų18106.1 Ų106.19%0.09256%0.559CS.*  trans-72.1120.9179.9-58.3-175.1000109.5L31 W32 E33 G34 Q35 V37 K53 C54L31-I51 HydrophobicContact CD1-CD1 3.03Å; L31-I51 HydrophobicContact CG-CD1 3.26Å; L31-I51 HydrophobicContact CD2-CD1 4.06Å; L31-I51 HydrophobicContact CD1-CG1 4.42Å; L31-I51 HydrophobicContact CB-CD1 4.48Å; W32-I51 WeakPolarHBondContact O-CB 3.32Å; E33-I51 CarbonylContact C-O 3.52Å; E33-I51 WeakPolarHBondContact CA-O 3.5Å; G34-I51 PolarHBondContact N-O 3.1Å; Q35-I51 WeakPolarHBondContact O-CG1 3.45Å; Q35-I51 PolarHBondContact O-N 2.94Å; Q35-I51 HydrophobicContact CB-CB 4.5Å; Q35-I51 HydrophobicContact CB-CD1 3.93Å; Q35-I51 HydrophobicContact CB-CG1 4.22Å; V37-I51 HydrophobicContact CG2-CG1 3.79Å; V37-I51 HydrophobicContact CG2-CD1 4.25Å; V37-I51 HydrophobicContact CG1-CG1 4.03Å; V37-I51 HydrophobicContact CG1-CD1 3.71Å; I51-K53 WeakPolarHBondContact CG2-O 3.43Å; I51-C54 VanDerWaalsContact CG2-SG 3.55Å
52K94.4Very high94.3Very high175 Ų175101.4 Ų101.476%0.76155%0.554SS**SBendtrans-97.6-16.1175-60.6-172.168.6-178.20113.2T50T50-K52 PolarHBondContact O-N 2.9Å
53K88.3Confident94Very high183 Ų18398.3 Ų98.380%0.79653%0.529SS*.  trans-159.6132.5-179.1-172.5168-177.5173.50109.5I51I51-K53 WeakPolarHBondContact CG2-O 3.43Å
54C72.3Confident93.7Very high115 Ų11599.4 Ų99.478%0.77754%0.535SS*.  trans-102.60173.4-62.30000111.4L31 W32 I51L31-C54 PolarHBondContact O-SG 2.79Å; L31-C54 HydrophobicContact CD2-CB 4.44Å; W32-C54 WeakPolarHBondContact CA-SG 3.33Å; I51-C54 VanDerWaalsContact CG2-SG 3.55Å

Retrieved 54 of 54 residues in 37.4 ms (Link to these results)