A0A087WZW0_HUMAN Loading...

Protocadherin 9

AlphaFold DB , UniProt , Accession A0A087WZW0, Species HUMAN (Homo sapiens, Human), Gene PCDH9, Length 44 aa.

						>A0A087WZW0_HUMAN|A0A087WZW0|PCDH9
CNSHSKSDNIPVTPQKCPSSTGFHIQENEESHYEGTLPYLRYSL
					

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(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	C	49.6	Very low	65.4	Low	177 Å²	177	139.1 Å²	139.1	100%	1.196	80%	0.797	S	S	*	*				0	102.4	0	-67.8	0	0	0	0	109.1	S3	C1-S3 PolarHBondContact O-N 3.23Å
2	N	50.9	Low	66.1	Low	172 Å²	172	138.9 Å²	138.9	92%	0.92	80%	0.8	S	S	*	*			trans	-92.9	90.4	175.8	-76.5	-16.5	0	0	0	108.6	H4	N2-H4 PolarHBondContact O-N 2.96Å
3	S	65.3	Low	66.9	Low	114 Å²	114	136.3 Å²	136.3	80%	0.797	79%	0.788	S	S	*	*			trans	-95.1	77.8	164.4	62	0	0	0	0	108.4	C1 S5	C1-S3 PolarHBondContact O-N 3.23Å; S3-S5 PolarHBondContact O-N 3.35Å
4	H	67.1	Low	67.6	Low	167 Å²	167	135.3 Å²	135.3	77%	0.773	79%	0.788	S	S	*	*			trans	-72.8	90.8	160.4	-162.9	85.7	0	0	0	105.6	N2 K6	N2-H4 PolarHBondContact O-N 2.96Å; H4-K6 VanDerWaalsContact C-N 3.31Å; H4-K6 PolarHBondContact O-N 2.92Å
5	S	66.4	Low	68.1	Low	103 Å²	103	138.4 Å²	138.4	72%	0.72	79%	0.792	S	S	*	*			trans	-63.8	100.2	173.5	-173.4	0	0	0	0	106.1	S3 S7	S3-S5 PolarHBondContact O-N 3.35Å; S5-S7 PolarHBondContact O-N 3.11Å; S5-S7 VanDerWaalsContact O-N 3.07Å
6	K	64.6	Low	68.6	Low	171 Å²	171	142.4 Å²	142.4	74%	0.743	80%	0.798	S	S	*	*			trans	-60.5	114.5	172.2	-72.3	179.3	178.5	-179.6	0	105	H4 D8	H4-K6 VanDerWaalsContact C-N 3.31Å; H4-K6 PolarHBondContact O-N 2.92Å; K6-D8 PolarHBondContact O-N 3.19Å
7	S	70.5	Confident	68.9	Low	107 Å²	107	140.2 Å²	140.2	75%	0.748	79%	0.793	S	S	*	*			trans	-50.6	105.5	175.2	177.2	0	0	0	0	108.1	S5 N9	S5-S7 PolarHBondContact O-N 3.11Å; S5-S7 VanDerWaalsContact O-N 3.07Å; S7-N9 PolarHBondContact O-N 3.18Å
8	D	71.1	Confident	68.8	Low	126 Å²	126	139.4 Å²	139.4	67%	0.674	79%	0.794	S	S	*	*			trans	-59.9	113.3	177	-72.7	-69.5	0	0	0	107.1	K6 I10	K6-D8 PolarHBondContact O-N 3.19Å; D8-I10 HydrophobicContact CB-CD1 4.14Å; D8-I10 HydrophobicContact CB-CG1 3.82Å; D8-I10 PolarHBondContact O-N 3.02Å
9	N	69.4	Low	68.8	Low	156 Å²	156	137.3 Å²	137.3	83%	0.834	79%	0.788	S	S	*	*			trans	-76.4	67.4	179.7	-136.6	-92.5	0	0	0	108.2	S7 P11	S7-N9 PolarHBondContact O-N 3.18Å; N9-P11 VanDerWaalsContact O-CD 3.28Å; N9-P11 WeakPolarHBondContact O-CD 3.27Å
10	I	73.4	Confident	68.9	Low	132 Å²	132	136.1 Å²	136.1	68%	0.677	79%	0.788	S	S	*	*			trans	-81	114.5	179.6	-48.5	176.1	0	0	0	106.7	D8 V12	D8-I10 HydrophobicContact CB-CD1 4.14Å; D8-I10 HydrophobicContact CB-CG1 3.82Å; D8-I10 PolarHBondContact O-N 3.02Å; I10-V12 PolarHBondContact O-N 2.85Å; I10-V12 VanDerWaalsContact O-N 3.08Å
11	P	71.8	Confident	68.9	Low	105 Å²	105	135.7 Å²	135.7	68%	0.682	79%	0.788	S	S	*	*			trans	-62.9	117.7	174.4	24.8	-30.9	0	0	0	108.5	N9 T13	N9-P11 VanDerWaalsContact O-CD 3.28Å; N9-P11 WeakPolarHBondContact O-CD 3.27Å; P11-T13 PolarHBondContact O-N 2.87Å
12	V	73.8	Confident	69.8	Low	137 Å²	137	129.3 Å²	129.3	83%	0.83	75%	0.753	S	S	*	*			trans	-68.9	105.3	173.7	179.7	0	0	0	0	107.2	I10 P14	I10-V12 PolarHBondContact O-N 2.85Å; I10-V12 VanDerWaalsContact O-N 3.08Å; V12-P14 WeakPolarHBondContact O-CD 3.47Å
13	T	75.4	Confident	70.5	Confident	105 Å²	105	130.6 Å²	130.6	64%	0.644	75%	0.751	S	S	*	*			trans	-74.2	126.2	169.6	44.9	0	0	0	0	108.3	P11 Q15	P11-T13 PolarHBondContact O-N 2.87Å; T13-Q15 PolarHBondContact O-N 3.12Å
14	P	77.5	Confident	70.7	Confident	122 Å²	122	132.8 Å²	132.8	79%	0.792	75%	0.748	S	S	*	*			trans	-59.8	114	171.3	-21.5	32.4	0	0	0	108.8	V12 K16	V12-P14 WeakPolarHBondContact O-CD 3.47Å; P14-K16 PolarHBondContact O-N 3.11Å
15	Q	75.6	Confident	70.9	Confident	182 Å²	182	131.3 Å²	131.3	85%	0.85	74%	0.744	S	S	*	*			trans	-69	103.7	171.1	-69.4	-127.7	10.3	0	0	107.7	T13 C17	T13-Q15 PolarHBondContact O-N 3.12Å; Q15-C17 PolarHBondContact O-N 2.94Å
16	K	75.6	Confident	71.1	Confident	203 Å²	203	133.8 Å²	133.8	88%	0.883	74%	0.744	S	S	*	*			trans	-79.1	107.8	173.8	-155.2	164.7	-177.6	-172.9	0	106.9	P14	P14-K16 PolarHBondContact O-N 3.11Å
17	C	74.2	Confident	71.4	Confident	105 Å²	105	134 Å²	134	71%	0.709	75%	0.748	S	S	*	*			trans	-54.4	141.2	175.9	-59	0	0	0	0	109.5	Q15 S19	Q15-C17 PolarHBondContact O-N 2.94Å; C17-S19 PolarHBondContact O-N 3.44Å
18	P	67.1	Low	71.3	Confident	126 Å²	126	135 Å²	135	82%	0.818	75%	0.745	S	S	*	*			trans	-62.9	105.6	168.4	26.3	-30.8	0	0	0	107.7	S20	P18-S20 VanDerWaalsContact C-N 3.27Å; P18-S20 PolarHBondContact O-N 3.04Å
19	S	68.8	Low	71.1	Confident	98 Å²	98	137.4 Å²	137.4	69%	0.685	75%	0.752	S	S	*	*			trans	-75.6	88.8	169.7	-169.6	0	0	0	0	107.2	C17 T21	C17-S19 PolarHBondContact O-N 3.44Å; S19-T21 PolarHBondContact O-N 2.92Å; S19-T21 PolarHBondContact OG-OG1 2.97Å
20	S	70.9	Confident	70.7	Confident	113 Å²	113	137.1 Å²	137.1	79%	0.79	75%	0.746	S	S	*	*			trans	-74.5	76.4	168.3	-170.1	0	0	0	0	108.8	P18	P18-S20 VanDerWaalsContact C-N 3.27Å; P18-S20 PolarHBondContact O-N 3.04Å
21	T	67.7	Low	70.3	Confident	128 Å²	128	135.9 Å²	135.9	79%	0.785	75%	0.749	S	S	*	*			trans	-116.4	67.3	161.5	43	0	0	0	0	107.2	S19	S19-T21 PolarHBondContact O-N 2.92Å; S19-T21 PolarHBondContact OG-OG1 2.97Å
22	G	68.8	Low	69.8	Low	44 Å²	44	137.9 Å²	137.9	45%	0.454	75%	0.749	S	S	.	*			trans	-157.6	80.7	176.6	0	0	0	0	0	107.5
23	F	65.2	Low	68.9	Low	199 Å²	199	141.5 Å²	141.5	87%	0.873	75%	0.749	S	S	*	*			trans	169	94.1	136.4	-74.5	-59	0	0	0	106.1	I25	F23-I25 VanDerWaalsContact C-N 3.26Å; F23-I25 VanDerWaalsContact O-N 3.11Å; F23-I25 HydrophobicContact CB-CG1 4.38Å; F23-I25 PolarHBondContact O-N 2.93Å
24	H	70.8	Confident	68.2	Low	160 Å²	160	145.4 Å²	145.4	74%	0.741	76%	0.76	S	S	*	*			trans	-76.7	90	160.9	-175.6	90.3	0	0	0	105.8	Q26	H24-Q26 PolarHBondContact O-N 3.27Å; H24-Q26 VanDerWaalsContact O-N 3.12Å
25	I	70.7	Confident	67.3	Low	135 Å²	135	141.8 Å²	141.8	69%	0.692	75%	0.745	S	S	*	*			trans	-72	104	165.2	-56.9	173.5	0	0	0	104.2	F23 E27	F23-I25 VanDerWaalsContact C-N 3.26Å; F23-I25 VanDerWaalsContact O-N 3.11Å; F23-I25 HydrophobicContact CB-CG1 4.38Å; F23-I25 PolarHBondContact O-N 2.93Å; I25-E27 VanDerWaalsContact C-N 3.34Å; I25-E27 PolarHBondContact O-N 3.02Å
26	Q	71.4	Confident	66.6	Low	155 Å²	155	139.3 Å²	139.3	72%	0.724	74%	0.742	S	S	*	*			trans	-70.3	100.6	169.2	-158.7	158.6	84.6	0	0	105.2	H24 N28	H24-Q26 PolarHBondContact O-N 3.27Å; H24-Q26 VanDerWaalsContact O-N 3.12Å; Q26-N28 VanDerWaalsContact C-N 3.31Å; Q26-N28 PolarHBondContact O-N 3.02Å
27	E	70.1	Confident	65.9	Low	176 Å²	176	136.7 Å²	136.7	82%	0.822	74%	0.737	S	S	*	*			trans	-62.8	103.6	166	-58.1	-148.3	111.3	0	0	105.2	I25 E29	I25-E27 VanDerWaalsContact C-N 3.34Å; I25-E27 PolarHBondContact O-N 3.02Å; E27-E29 VanDerWaalsContact C-N 3.33Å; E27-E29 PolarHBondContact O-N 3.08Å
28	N	68.8	Low	65	Low	129 Å²	129	136.9 Å²	136.9	69%	0.69	74%	0.737	S	S	*	*			trans	-62	101.5	176.6	177.6	97.2	0	0	0	106.8	Q26 E30	Q26-N28 VanDerWaalsContact C-N 3.31Å; Q26-N28 PolarHBondContact O-N 3.02Å; N28-E30 PolarHBondContact O-N 3.07Å
29	E	66.3	Low	64.6	Low	176 Å²	176	139 Å²	139	82%	0.822	73%	0.73	S	S	*	*			trans	-50.2	112.9	168.3	56.6	-164.5	102.5	0	0	108.8	E27 S31	E27-E29 VanDerWaalsContact C-N 3.33Å; E27-E29 PolarHBondContact O-N 3.08Å; E29-S31 PolarHBondContact O-N 3.04Å
30	E	61.9	Low	64.1	Low	149 Å²	149	142.4 Å²	142.4	70%	0.696	74%	0.739	S	S	*	*			trans	-7.7	103.6	162.6	-178.4	169.3	70.1	0	0	114.5	N28 H32	N28-E30 PolarHBondContact O-N 3.07Å; E30-H32 PolarHBondContact O-N 3.04Å; E30-H32 PolarHBondContact OE1-NE2 2.82Å; E30-H32 IonicContact OE1-NE2 3.19Å; E30-H32 IonicContact OE1-CE1 3.6Å; E30-H32 IonicContact OE1-CD2 3.76Å
31	S	63.1	Low	63.6	Low	107 Å²	107	148.4 Å²	148.4	75%	0.748	75%	0.745	S	S	*	*			trans	-69.7	86.3	167.2	-65.2	0	0	0	0	109	E29 Y33	E29-S31 PolarHBondContact O-N 3.04Å; S31-Y33 PolarHBondContact O-N 2.86Å; S31-Y33 VanDerWaalsContact O-N 3.11Å
32	H	62.9	Low	63.1	Low	146 Å²	146	151.8 Å²	151.8	68%	0.676	75%	0.745	S	S	*	*			trans	-58.3	109.8	162.9	-84.9	165.8	0	0	0	109.9	E30	E30-H32 PolarHBondContact O-N 3.04Å; E30-H32 PolarHBondContact OE1-NE2 2.82Å; E30-H32 IonicContact OE1-NE2 3.19Å; E30-H32 IonicContact OE1-CE1 3.6Å; E30-H32 IonicContact OE1-CD2 3.76Å
33	Y	55.1	Low	62.5	Low	213 Å²	213	155.6 Å²	155.6	84%	0.835	77%	0.765	S	S	*	*			trans	-144.8	67.3	155.5	-142.8	-90.6	0	0	0	110.8	S31 G35	S31-Y33 PolarHBondContact O-N 2.86Å; S31-Y33 VanDerWaalsContact O-N 3.11Å; Y33-G35 PolarHBondContact O-N 3.01Å
34	E	60.6	Low	61.9	Low	188 Å²	188	158.1 Å²	158.1	88%	0.879	79%	0.786	S	S	*	*			trans	-75.6	64.4	161.9	-74.5	-70.2	110	0	0	109.2	T36	E34-T36 PolarHBondContact O-N 2.89Å
35	G	58.1	Low	61.4	Low	45 Å²	45	158 Å²	158	46%	0.464	79%	0.788	S	S	.	*			trans	-86.4	90.5	172.2	0	0	0	0	0	109.9	Y33 L37	Y33-G35 PolarHBondContact O-N 3.01Å; G35-L37 PolarHBondContact O-N 3.46Å
36	T	61.1	Low	60.9	Low	130 Å²	130	159.2 Å²	159.2	80%	0.798	79%	0.793	S	S	*	*			trans	-47.4	118.9	176.1	-48.4	0	0	0	0	111.6	E34 P38	E34-T36 PolarHBondContact O-N 2.89Å; T36-P38 VanDerWaalsContact O-CD 3.27Å; T36-P38 WeakPolarHBondContact O-CD 3.28Å
37	L	60.3	Low	60.4	Low	148 Å²	148	159.4 Å²	159.4	78%	0.775	80%	0.797	S	S	*	*			trans	-64.2	116.4	174.5	-68.1	172.5	0	0	0	110.2	G35 Y39	G35-L37 PolarHBondContact O-N 3.46Å; L37-Y39 PolarHBondContact O-N 3.49Å
38	P	55.4	Low	59.8	Low	110 Å²	110	158.5 Å²	158.5	71%	0.714	80%	0.795	S	S	*	*	T	Hydrogen-bonded Turn	trans	-81.8	38.7	-176.2	34.7	-36.4	0	0	0	113.6	T36	T36-P38 VanDerWaalsContact O-CD 3.27Å; T36-P38 WeakPolarHBondContact O-CD 3.28Å
39	Y	58	Low	59.2	Low	171 Å²	171	160.3 Å²	160.3	67%	0.671	80%	0.802	S	S	*	*	T	Hydrogen-bonded Turn	trans	-119.3	15	-175.2	-74.4	-77.2	0	0	0	115.3	L37	L37-Y39 PolarHBondContact O-N 3.49Å
40	L	58.6	Low	58.8	Low	168 Å²	168	159.3 Å²	159.3	88%	0.88	80%	0.8	S	S	*	*			trans	-104.2	53	171.1	-75.1	171.4	0	0	0	112.5
41	R	61.1	Low	58.5	Low	240 Å²	240	160 Å²	160	91%	0.906	81%	0.808	S	S	*	*			trans	-135.7	58.4	165.1	-78.5	-74.5	-172.3	156	0.2	110
42	Y	56.6	Low	58.2	Low	198 Å²	198	164.1 Å²	164.1	78%	0.776	81%	0.812	S	S	*	*			trans	-94.5	104	158.5	-70.4	-77	0	0	0	108.6
43	S	57.2	Low	57.8	Low	125 Å²	125	165.6 Å²	165.6	87%	0.874	82%	0.824	S	S	*	*			trans	-163.6	99	157.7	-68.7	0	0	0	0	107.6
44	L	51.4	Low	58	Low	251 Å²	251	161.3 Å²	161.3	100%	1.314	82%	0.823	S	S	*	*			trans	-122.7	0	164.7	-116.1	155	0	0	0	106.8

Retrieved 44 of 44 residues in 11.9 ms (Link to these results)

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