A0A087X083_HUMAN Loading...

LIM homeobox 9

AlphaFold DB , UniProt , Accession A0A087X083, Species HUMAN (Homo sapiens, Human), Gene LHX9, Length 37 aa.

>A0A087X083_HUMAN|A0A087X083|LHX9
MLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGR
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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M57.8Low65.3Low226 Ų226114.4 Ų114.4100%1.11366%0.656SS**  0127.90-156.4159.8-163.500106.9F3M1-F3 PolarHBondContact O-N 3.24Å
2L67.3Low66.3Low170 Ų170114.9 Ų114.989%0.8965%0.649SS**  trans-59.65-166.6-82.8158.5000116.6
3F62.7Low67.5Low145 Ų145108.7 Ų108.764%0.63663%0.626SS**  trans-134.271-175.5-54.9-75.2000109.8M1 I6M1-F3 PolarHBondContact O-N 3.24Å; F3-I6 HydrophobicContact CD1-CD1 4.37Å
4H60.1Low68.7Low191 Ų191107.1 Ų107.188%0.88461%0.613SS**SBendtrans-104.6102.6165.2-17084000107.3
5G56.1Low69.6Low77 Ų77108.7 Ų108.779%0.79462%0.615SS**SBendtrans128.8-2.9173.600000117.2
6I60.9Low70.5Confident61 Ų61110.8 Ų110.831%0.31362%0.618SS.*  trans-97.6109.2175-51.4-169.1000108.3F3 G8 H10 I11 I14F3-I6 HydrophobicContact CD1-CD1 4.37Å; I6-G8 PolarHBondContact O-N 3.46Å; I6-H10 HydrophobicContact CG2-CB 3.44Å; I6-H10 VanDerWaalsContact CG2-CB 3.44Å; I6-I11 HydrophobicContact CB-CD1 4.16Å; I6-I11 HydrophobicContact CB-CG1 3.78Å; I6-I11 HydrophobicContact CG2-CD1 4.41Å; I6-I11 HydrophobicContact CG2-CG1 3.54Å; I6-I14 HydrophobicContact CD1-CD1 4.3Å
7S66.8Low71.2Confident99 Ų99108.9 Ų108.969%0.69260%0.603SS**  trans-51.5138.8172.5175.10000109.7G9 H10 I11S7-G9 PolarHBondContact O-N 3.46Å; S7-H10 PolarHBondContact O-N 3.33Å; S7-I11 PolarHBondContact O-N 2.75Å
8G63.9Low71.8Confident43 Ų43110.6 Ų110.644%0.44361%0.608SS.*Hα-helixtrans-52.2-24-171.700000115.2I6 Q12I6-G8 PolarHBondContact O-N 3.46Å; G8-Q12 WeakPolarHBondContact O-CG 3.44Å; G8-Q12 PolarHBondContact O-N 3.4Å; G8-Q12 PolarHBondContact O-NE2 3.17Å
9G69.9Low72.2Confident49 Ų49110.3 Ų110.351%0.50560%0.602SS.*Hα-helixtrans-69.4-33.4172.200000114.5S7 G13S7-G9 PolarHBondContact O-N 3.46Å; G9-G13 PolarHBondContact O-N 3.11Å; G9-G13 VanDerWaalsContact O-N 3.09Å
10H73.8Confident72.7Confident121 Ų121112 Ų11256%0.5660%0.599SS**Hα-helixtrans-79.8-30.8-180-169.4129.3000111.1I6 S7 G13 I14I6-H10 HydrophobicContact CG2-CB 3.44Å; I6-H10 VanDerWaalsContact CG2-CB 3.44Å; S7-H10 PolarHBondContact O-N 3.33Å; H10-G13 PolarHBondContact O-N 3.23Å; H10-I14 WeakPolarHBondContact O-CG1 3.38Å; H10-I14 PolarHBondContact O-N 2.86Å
11I79.1Confident72.8Confident76 Ų76113.5 Ų113.539%0.3960%0.596SS.*Hα-helixtrans-65.4-42.8169.4-65.3170.9000110.7I6 S7 G13 I14 M15I6-I11 HydrophobicContact CB-CD1 4.16Å; I6-I11 HydrophobicContact CB-CG1 3.78Å; I6-I11 HydrophobicContact CG2-CD1 4.41Å; I6-I11 HydrophobicContact CG2-CG1 3.54Å; S7-I11 PolarHBondContact O-N 2.75Å; I11-G13 PolarHBondContact O-N 2.69Å; I11-I14 PolarHBondContact O-N 2.86Å; I11-M15 WeakPolarHBondContact O-CB 3.38Å; I11-M15 PolarHBondContact O-N 3.43Å
12Q76.7Confident73.3Confident121 Ų121106 Ų10657%0.56557%0.566SS**Hα-helixtrans-60.1-45.3175.9-75.8170.899.400111.5G8 I14 M15 E16G8-Q12 WeakPolarHBondContact O-CG 3.44Å; G8-Q12 PolarHBondContact O-N 3.4Å; G8-Q12 PolarHBondContact O-NE2 3.17Å; Q12-I14 VanDerWaalsContact C-N 3.33Å; Q12-I14 PolarHBondContact O-N 3.34Å; Q12-M15 PolarHBondContact O-N 2.97Å; Q12-E16 WeakPolarHBondContact O-CB 3.46Å; Q12-E16 WeakPolarHBondContact O-CG 3.27Å; Q12-E16 PolarHBondContact O-N 3.36Å
13G82.9Confident73.1Confident34 Ų34104.3 Ų104.335%0.35155%0.551SS.*Hα-helixtrans-61.4-37.8175.600000113.8G9 H10 I11 E17G9-G13 PolarHBondContact O-N 3.11Å; G9-G13 VanDerWaalsContact O-N 3.09Å; H10-G13 PolarHBondContact O-N 3.23Å; I11-G13 PolarHBondContact O-N 2.69Å; G13-E17 WeakPolarHBondContact O-CB 3.35Å; G13-E17 PolarHBondContact O-N 3.41Å
14I84.4Confident73Confident86 Ų86101.4 Ų101.444%0.44155%0.545SS..Hα-helixtrans-67.4-42.7174.1-68.5169.5000110.9I6 H10 I11 Q12 E17 M18I6-I14 HydrophobicContact CD1-CD1 4.3Å; H10-I14 WeakPolarHBondContact O-CG1 3.38Å; H10-I14 PolarHBondContact O-N 2.86Å; I11-I14 PolarHBondContact O-N 2.86Å; Q12-I14 VanDerWaalsContact C-N 3.33Å; Q12-I14 PolarHBondContact O-N 3.34Å; I14-E17 PolarHBondContact O-N 2.87Å; I14-M18 VanDerWaalsContact O-CB 3.22Å; I14-M18 WeakPolarHBondContact O-CB 3.49Å; I14-M18 PolarHBondContact O-N 3.39Å
15M81.8Confident72.9Confident132 Ų13297.9 Ų97.965%0.6553%0.529SS*.Hα-helixtrans-63.1-43.1178.1-174176.8176.600111.4I11 Q12 M18 E19I11-M15 WeakPolarHBondContact O-CB 3.38Å; I11-M15 PolarHBondContact O-N 3.43Å; Q12-M15 PolarHBondContact O-N 2.97Å; M15-M18 PolarHBondContact O-N 2.68Å; M15-E19 WeakPolarHBondContact O-CB 3.26Å; M15-E19 PolarHBondContact O-N 3.27Å
16E83.6Confident72.9Confident141 Ų14196.7 Ų96.766%0.65951%0.512SS*.Hα-helixtrans-62.7-46.4175.1-76.217917800111.9Q12 M18 E19 R20Q12-E16 WeakPolarHBondContact O-CB 3.46Å; Q12-E16 WeakPolarHBondContact O-CG 3.27Å; Q12-E16 PolarHBondContact O-N 3.36Å; E16-M18 VanDerWaalsContact C-N 3.34Å; E16-M18 PolarHBondContact O-N 3.36Å; E16-E19 PolarHBondContact O-N 2.83Å; E16-R20 WeakPolarHBondContact O-CB 3.27Å; E16-R20 PolarHBondContact O-N 3.38Å
17E83.1Confident72.6Confident79 Ų79104.2 Ų104.237%0.36954%0.537SS..Hα-helixtrans-66.4-37.1178-177.256.4-155.100111.7G13 I14 R20 R21G13-E17 WeakPolarHBondContact O-CB 3.35Å; G13-E17 PolarHBondContact O-N 3.41Å; I14-E17 PolarHBondContact O-N 2.87Å; E17-R20 PolarHBondContact O-N 3.45Å; E17-R20 IonicContact OE1-CZ 3.58Å; E17-R20 IonicContact OE1-NE 2.71Å; E17-R20 PolarHBondContact OE1-NE 3.5Å; E17-R20 IonicContact OE1-NH2 2.86Å; E17-R20 PolarHBondContact OE1-NH2 2.99Å; E17-R20 IonicContact OE2-CZ 3.46Å; E17-R20 IonicContact OE2-NE 3.41Å; E17-R20 PolarHBondContact OE2-NE 3.31Å; E17-R20 IonicContact OE2-NH2 2.69Å; E17-R21 WeakPolarHBondContact O-CB 3.11Å; E17-R21 VanDerWaalsContact O-CG 3.27Å; E17-R21 WeakPolarHBondContact O-CG 3.49Å; E17-R21 PolarHBondContact O-N 3.43Å
18M81.5Confident71.9Confident139 Ų139105.3 Ų105.369%0.68553%0.534SS*.Hα-helixtrans-64.6-42.6174.1-168176.6-150.500111.5I14 M15 E16 R21 S22I14-M18 VanDerWaalsContact O-CB 3.22Å; I14-M18 WeakPolarHBondContact O-CB 3.49Å; I14-M18 PolarHBondContact O-N 3.39Å; M15-M18 PolarHBondContact O-N 2.68Å; E16-M18 VanDerWaalsContact C-N 3.34Å; E16-M18 PolarHBondContact O-N 3.36Å; M18-R21 PolarHBondContact O-N 2.92Å; M18-S22 WeakPolarHBondContact O-CB 3.23Å; M18-S22 PolarHBondContact O-N 2.71Å
19E78.9Confident71.5Confident105 Ų105106 Ų10649%0.49154%0.536SS..Hα-helixtrans-66.1-39.8176.3-166.4-17410700111.7M15 E16 R21 S22 K23M15-E19 WeakPolarHBondContact O-CB 3.26Å; M15-E19 PolarHBondContact O-N 3.27Å; E16-E19 PolarHBondContact O-N 2.83Å; E19-R21 PolarHBondContact O-N 3.22Å; E19-S22 PolarHBondContact O-N 2.99Å; E19-K23 PolarHBondContact O-N 2.83Å; E19-K23 WeakPolarHBondContact OE1-CE 3.27Å; E19-K23 IonicContact OE1-NZ 3.65Å; E19-K23 PolarHBondContact OE1-NZ 3.49Å
20R83.1Confident70.8Confident144 Ų144111.1 Ų111.154%0.54354%0.544SS..Hα-helixtrans-62-43.4176.9-166.8-168.971.975.41.6111.9E16 E17 T24E16-R20 WeakPolarHBondContact O-CB 3.27Å; E16-R20 PolarHBondContact O-N 3.38Å; E17-R20 PolarHBondContact O-N 3.45Å; E17-R20 IonicContact OE1-CZ 3.58Å; E17-R20 IonicContact OE1-NE 2.71Å; E17-R20 PolarHBondContact OE1-NE 3.5Å; E17-R20 IonicContact OE1-NH2 2.86Å; E17-R20 PolarHBondContact OE1-NH2 2.99Å; E17-R20 IonicContact OE2-CZ 3.46Å; E17-R20 IonicContact OE2-NE 3.41Å; E17-R20 PolarHBondContact OE2-NE 3.31Å; E17-R20 IonicContact OE2-NH2 2.69Å; R20-T24 PolarHBondContact O-OG1 3.31Å
21R74.9Confident69.8Low145 Ų145107.3 Ų107.355%0.54754%0.537SS..Hα-helixtrans-69.4-42.2176-68176.579.1173.16.8111.2E17 M18 E19 K23 T24 E25E17-R21 WeakPolarHBondContact O-CB 3.11Å; E17-R21 VanDerWaalsContact O-CG 3.27Å; E17-R21 WeakPolarHBondContact O-CG 3.49Å; E17-R21 PolarHBondContact O-N 3.43Å; M18-R21 PolarHBondContact O-N 2.92Å; E19-R21 PolarHBondContact O-N 3.22Å; R21-K23 PolarHBondContact O-N 3.01Å; R21-T24 WeakPolarHBondContact O-CA 3.43Å; R21-T24 WeakPolarHBondContact O-CB 3.33Å; R21-T24 PolarHBondContact O-N 2.72Å; R21-E25 PolarHBondContact O-N 2.99Å
22S67.1Low68.5Low67 Ų67106.6 Ų106.647%0.46954%0.543SS..Hα-helixtrans-58.2-40.8176.8-179.20000112.9M18 E19 T24 E25 A26M18-S22 WeakPolarHBondContact O-CB 3.23Å; M18-S22 PolarHBondContact O-N 2.71Å; E19-S22 PolarHBondContact O-N 2.99Å; S22-T24 PolarHBondContact O-N 3.41Å; S22-E25 PolarHBondContact O-N 2.91Å; S22-A26 WeakPolarHBondContact O-CA 3.2Å; S22-A26 WeakPolarHBondContact O-CB 3.41Å; S22-A26 PolarHBondContact O-N 3.09Å
23K64.6Low67.4Low135 Ų135108.3 Ų108.359%0.58755%0.551SS**Hα-helixtrans-61.9-28.7174.9-74.9173.1-172.8160.10113.3E19 R21E19-K23 PolarHBondContact O-N 2.83Å; E19-K23 WeakPolarHBondContact OE1-CE 3.27Å; E19-K23 IonicContact OE1-NZ 3.65Å; E19-K23 PolarHBondContact OE1-NZ 3.49Å; R21-K23 PolarHBondContact O-N 3.01Å
24T60.4Low66Low84 Ų84113.8 Ų113.852%0.51557%0.571SS.*Hα-helixtrans-83.4-43.5179.2-48.40000110.9R20 R21 S22 R27 L28R20-T24 PolarHBondContact O-OG1 3.31Å; R21-T24 WeakPolarHBondContact O-CA 3.43Å; R21-T24 WeakPolarHBondContact O-CB 3.33Å; R21-T24 PolarHBondContact O-N 2.72Å; S22-T24 PolarHBondContact O-N 3.41Å; T24-R27 PolarHBondContact O-N 3.41Å; T24-L28 PolarHBondContact O-N 3.41Å
25E58.1Low64.6Low117 Ų117116.8 Ų116.855%0.54759%0.588SS.*Hα-helixtrans-70.6-29175.3-72.4-178.190.300112.5R21 S22 R27 L28 A29R21-E25 PolarHBondContact O-N 2.99Å; S22-E25 PolarHBondContact O-N 2.91Å; E25-R27 VanDerWaalsContact C-N 3.31Å; E25-R27 PolarHBondContact O-N 2.85Å; E25-L28 CarbonylContact O-C 3.56Å; E25-L28 PolarHBondContact O-N 3.25Å; E25-L28 VanDerWaalsContact O-N 3.11Å; E25-A29 VanDerWaalsContact O-CB 3.23Å; E25-A29 WeakPolarHBondContact O-CB 3.22Å; E25-A29 PolarHBondContact O-N 2.79Å
26A55.6Low63.5Low53 Ų53113 Ų11344%0.43858%0.582SS.*Hα-helixtrans-64.3-34.317600000112.2S22 K30S22-A26 WeakPolarHBondContact O-CA 3.2Å; S22-A26 WeakPolarHBondContact O-CB 3.41Å; S22-A26 PolarHBondContact O-N 3.09Å; A26-K30 VanDerWaalsContact O-CB 3.27Å; A26-K30 WeakPolarHBondContact O-CB 3.34Å; A26-K30 PolarHBondContact O-N 3.49Å
27R54.8Low61.8Low218 Ų218121.5 Ų121.582%0.82361%0.609SS**Hα-helixtrans-69.3-38.3171.5-92.1179.7163.4176.9-4.4111.9T24 E25 G31T24-R27 PolarHBondContact O-N 3.41Å; E25-R27 VanDerWaalsContact C-N 3.31Å; E25-R27 PolarHBondContact O-N 2.85Å; R27-G31 PolarHBondContact O-N 3.47Å
28L52.8Low60.7Low123 Ų123123.7 Ų123.764%0.64462%0.621SS**Hα-helixtrans-72.3-39.3176.5-76.1159.9000112.3T24 E25 G31 A32T24-L28 PolarHBondContact O-N 3.41Å; E25-L28 CarbonylContact O-C 3.56Å; E25-L28 PolarHBondContact O-N 3.25Å; E25-L28 VanDerWaalsContact O-N 3.11Å; L28-G31 CarbonylContact O-C 3.52Å; L28-G31 PolarHBondContact O-N 3.06Å; L28-A32 VanDerWaalsContact O-CB 3.26Å; L28-A32 WeakPolarHBondContact O-CB 3.48Å; L28-A32 PolarHBondContact O-N 3.43Å
29A54Low59.6Low57 Ų57122.8 Ų122.847%0.47162%0.617SS.*Hα-helixtrans-69.4-38.5177.300000111.5E25 G31 A32 Q33E25-A29 VanDerWaalsContact O-CB 3.23Å; E25-A29 WeakPolarHBondContact O-CB 3.22Å; E25-A29 PolarHBondContact O-N 2.79Å; A29-G31 VanDerWaalsContact C-N 3.27Å; A29-G31 PolarHBondContact O-N 3.38Å; A29-A32 PolarHBondContact O-N 3.17Å; A29-Q33 VanDerWaalsContact O-CB 3.27Å; A29-Q33 WeakPolarHBondContact O-CB 3.49Å; A29-Q33 PolarHBondContact O-N 3.49Å
30K56.3Low58.5Low157 Ų157123.8 Ų123.868%0.68362%0.624SS**Hα-helixtrans-67.7-27.9173.1-144.7-179-167.7-153.70112.4A26 L34A26-K30 VanDerWaalsContact O-CB 3.27Å; A26-K30 WeakPolarHBondContact O-CB 3.34Å; A26-K30 PolarHBondContact O-N 3.49Å; K30-L34 WeakPolarHBondContact O-CD1 3.32Å; K30-L34 WeakPolarHBondContact O-CG 3.43Å
31G52.2Low57.1Low40 Ų40122.6 Ų122.641%0.41263%0.629SS.*Hα-helixtrans-80.1-34.9170.900000113.9R27 L28 A29 L34 N35R27-G31 PolarHBondContact O-N 3.47Å; L28-G31 CarbonylContact O-C 3.52Å; L28-G31 PolarHBondContact O-N 3.06Å; A29-G31 VanDerWaalsContact C-N 3.27Å; A29-G31 PolarHBondContact O-N 3.38Å; G31-L34 PolarHBondContact O-N 3.21Å; G31-N35 PolarHBondContact O-N 2.87Å
32A51.6Low56Low62 Ų62121.3 Ų121.351%0.51263%0.634SS.*Hα-helixtrans-73.6-35.817700000112.2L28 A29 L34 N35 G36L28-A32 VanDerWaalsContact O-CB 3.26Å; L28-A32 WeakPolarHBondContact O-CB 3.48Å; L28-A32 PolarHBondContact O-N 3.43Å; A29-A32 PolarHBondContact O-N 3.17Å; A32-L34 PolarHBondContact O-N 2.91Å; A32-N35 CarbonylContact O-C 3.51Å; A32-N35 PolarHBondContact O-N 2.79Å; A32-G36 PolarHBondContact O-N 2.9Å
33Q53.4Low55.2Low157 Ų157124.9 Ų124.973%0.73465%0.645SS**G310 helixtrans-64.4-28.9173-169.3-174.1-88.900112.1A29A29-Q33 VanDerWaalsContact O-CB 3.27Å; A29-Q33 WeakPolarHBondContact O-CB 3.49Å; A29-Q33 PolarHBondContact O-N 3.49Å
34L54Low54.5Low149 Ų149124.1 Ų124.178%0.7865%0.649SS**G310 helixtrans-83.9-11.3176.6-68.8172.9000113.4K30 G31 A32K30-L34 WeakPolarHBondContact O-CD1 3.32Å; K30-L34 WeakPolarHBondContact O-CG 3.43Å; G31-L34 PolarHBondContact O-N 3.21Å; A32-L34 PolarHBondContact O-N 2.91Å
35N54.1Low54.1Low149 Ų149127.2 Ų127.280%0.79766%0.66SS**G310 helixtrans-123.830.8-177.3-156.45.1000112.3G31 A32G31-N35 PolarHBondContact O-N 2.87Å; A32-N35 CarbonylContact O-C 3.51Å; A32-N35 PolarHBondContact O-N 2.79Å
36G59.7Low53.8Low51 Ų51128.1 Ų128.153%0.52667%0.669SS.*  trans-137.975.3179.200000110A32A32-G36 PolarHBondContact O-N 2.9Å
37R46.8Very low53.6Low321 Ų321134.9 Ų134.9100%1.21169%0.69SS**  trans33.30156.2-64.2175.873145.91.3118.2

Retrieved 37 of 37 residues in 99.5 ms (Link to these results)