A0A087X0C3_HUMAN Loading...

YTH N6-methyladenosine RNA binding protein F3

AlphaFold DB , UniProt , Accession A0A087X0C3, Species HUMAN (Homo sapiens, Human), Gene YTHDF3, Length 41 aa.

						>A0A087X0C3_HUMAN|A0A087X0C3|YTHDF3
MSATSVDQRPKGQGNKGAVKPVSEENSFSTKRFDSSKRCCK
					

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(Predicted Aligned Error values between residue pairs)

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Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	49.2	Very low	66.7	Low	244 Å²	244	153.1 Å²	153.1	100%	1.202	84%	0.841	S	S	*	*				0	117.3	0	-98.7	149.5	158.6	0	0	108.4
2	S	66.3	Low	66.8	Low	113 Å²	113	146.8 Å²	146.8	79%	0.79	84%	0.837	S	S	*	*			trans	35.8	106.7	166.6	-48.1	0	0	0	0	121.1
3	A	64.7	Low	66.8	Low	106 Å²	106	148.9 Å²	148.9	88%	0.876	84%	0.836	S	S	*	*			trans	-86	123.3	147.4	0	0	0	0	0	108.2
4	T	63.3	Low	67.1	Low	128 Å²	128	143.4 Å²	143.4	79%	0.785	83%	0.829	S	S	*	*			trans	-109.5	103.2	173.7	47.1	0	0	0	0	108.9
5	S	69.7	Low	67.1	Low	108 Å²	108	143.5 Å²	143.5	76%	0.755	83%	0.825	S	S	*	*			trans	-86.2	130.9	164	50	0	0	0	0	109
6	V	70.1	Confident	67.1	Low	133 Å²	133	147 Å²	147	81%	0.806	83%	0.828	S	S	*	*			trans	-118.5	104.7	158.5	-179.9	0	0	0	0	105.8	Q8	V6-Q8 PolarHBondContact O-N 2.91Å
7	D	68.1	Low	67.4	Low	132 Å²	132	141.4 Å²	141.4	71%	0.706	81%	0.81	S	S	*	*			trans	-53.7	107.4	172.3	-88.4	-51	0	0	0	110	R9	D7-R9 VanDerWaalsContact C-N 3.29Å; D7-R9 PolarHBondContact O-N 3.2Å
8	Q	69.1	Low	67.7	Low	184 Å²	184	138.7 Å²	138.7	86%	0.86	81%	0.808	S	S	*	*			trans	-75.1	86	163.2	-71.5	-103.6	34.6	0	0	107.8	V6 P10	V6-Q8 PolarHBondContact O-N 2.91Å; Q8-P10 WeakPolarHBondContact O-CD 3.23Å
9	R	71.7	Confident	68	Low	207 Å²	207	138.4 Å²	138.4	78%	0.781	81%	0.808	S	S	*	*			trans	-68.7	123.3	163.4	-64.1	-176.8	-168.7	170.4	4.2	107.1	D7 K11	D7-R9 VanDerWaalsContact C-N 3.29Å; D7-R9 PolarHBondContact O-N 3.2Å; R9-K11 PolarHBondContact O-N 3.01Å; R9-K11 VanDerWaalsContact O-N 3.13Å
10	P	72.1	Confident	68.3	Low	123 Å²	123	140.6 Å²	140.6	80%	0.799	81%	0.807	S	S	*	*			trans	-56.8	125.8	175.1	22.7	-31.3	0	0	0	108.2	Q8 G12	Q8-P10 WeakPolarHBondContact O-CD 3.23Å; P10-G12 VanDerWaalsContact C-N 3.32Å; P10-G12 PolarHBondContact O-N 2.79Å
11	K	69.6	Low	68.3	Low	206 Å²	206	139.5 Å²	139.5	90%	0.896	81%	0.805	S	S	*	*			trans	-63.9	98.9	172.6	-71.9	-105.8	-177.4	172.5	0	106.7	R9 Q13	R9-K11 PolarHBondContact O-N 3.01Å; R9-K11 VanDerWaalsContact O-N 3.13Å; K11-Q13 PolarHBondContact O-N 3.33Å
12	G	67.8	Low	69.3	Low	77 Å²	77	134.5 Å²	134.5	79%	0.794	79%	0.788	S	S	*	*			trans	-59.1	99.6	169.8	0	0	0	0	0	108.6	P10 G14	P10-G12 VanDerWaalsContact C-N 3.32Å; P10-G12 PolarHBondContact O-N 2.79Å; G12-G14 VanDerWaalsContact C-N 3.29Å; G12-G14 PolarHBondContact O-N 3.4Å
13	Q	67.4	Low	69.3	Low	175 Å²	175	133.7 Å²	133.7	82%	0.818	78%	0.782	S	S	*	*			trans	-78.1	89.8	170.5	-165.6	172.4	31.5	0	0	106.6	K11 N15	K11-Q13 PolarHBondContact O-N 3.33Å; Q13-N15 VanDerWaalsContact C-N 3.26Å; Q13-N15 PolarHBondContact O-N 2.76Å
14	G	69.9	Low	69.2	Low	71 Å²	71	137 Å²	137	73%	0.732	78%	0.78	S	S	*	*			trans	-62.7	91.5	169.6	0	0	0	0	0	108.8	G12 K16	G12-G14 VanDerWaalsContact C-N 3.29Å; G12-G14 PolarHBondContact O-N 3.4Å; G14-K16 PolarHBondContact O-N 3.27Å
15	N	67.9	Low	69.1	Low	146 Å²	146	138.8 Å²	138.8	78%	0.781	78%	0.779	S	S	*	*			trans	-79.1	73.4	172.8	-140	-3.7	0	0	0	107.6	Q13 G17	Q13-N15 VanDerWaalsContact C-N 3.26Å; Q13-N15 PolarHBondContact O-N 2.76Å; N15-G17 PolarHBondContact O-N 2.95Å
16	K	67.1	Low	68.5	Low	199 Å²	199	141.3 Å²	141.3	87%	0.865	78%	0.784	S	S	*	*			trans	-72.4	80.7	162.4	-69.1	-172.4	-178.8	-177.5	0	105.9	G14 A18	G14-K16 PolarHBondContact O-N 3.27Å; K16-A18 PolarHBondContact O-N 2.79Å; K16-A18 VanDerWaalsContact O-N 3.14Å
17	G	71.7	Confident	68.2	Low	51 Å²	51	139.7 Å²	139.7	53%	0.526	78%	0.779	S	S	.	*			trans	-46.8	124.5	167.9	0	0	0	0	0	107.3	N15 V19	N15-G17 PolarHBondContact O-N 2.95Å; G17-V19 PolarHBondContact O-N 2.82Å
18	A	73.6	Confident	67.7	Low	94 Å²	94	141.6 Å²	141.6	78%	0.777	78%	0.781	S	S	*	*			trans	-55.2	107.1	174.3	0	0	0	0	0	107.2	K16 K20	K16-A18 PolarHBondContact O-N 2.79Å; K16-A18 VanDerWaalsContact O-N 3.14Å; A18-K20 VanDerWaalsContact C-N 3.3Å; A18-K20 PolarHBondContact O-N 2.98Å
19	V	73.1	Confident	67.5	Low	133 Å²	133	136.3 Å²	136.3	81%	0.806	76%	0.764	S	S	*	*			trans	-65.8	102.1	168.3	179.1	0	0	0	0	104.5	G17 P21	G17-V19 PolarHBondContact O-N 2.82Å; V19-P21 VanDerWaalsContact O-CD 3.28Å; V19-P21 WeakPolarHBondContact O-CD 3.4Å
20	K	74.3	Confident	67.1	Low	182 Å²	182	131.5 Å²	131.5	79%	0.791	76%	0.758	S	S	*	*			trans	-59.7	119.9	168.2	-71.2	-178.7	178	177	0	105.8	A18 V22	A18-K20 VanDerWaalsContact C-N 3.3Å; A18-K20 PolarHBondContact O-N 2.98Å; K20-V22 PolarHBondContact O-N 2.87Å
21	P	68.6	Low	66.9	Low	118 Å²	118	134.5 Å²	134.5	77%	0.766	76%	0.759	S	S	*	*			trans	-59.6	119.1	163.7	25.9	-30.4	0	0	0	105.8	V19 S23	V19-P21 VanDerWaalsContact O-CD 3.28Å; V19-P21 WeakPolarHBondContact O-CD 3.4Å; P21-S23 PolarHBondContact O-N 2.8Å
22	V	70	Confident	66.9	Low	139 Å²	139	136.1 Å²	136.1	84%	0.842	76%	0.759	S	S	*	*			trans	-59.7	109.2	163.4	-110.7	0	0	0	0	104.5	K20 E24	K20-V22 PolarHBondContact O-N 2.87Å; V22-E24 PolarHBondContact O-N 2.8Å
23	S	65.2	Low	66.7	Low	95 Å²	95	139.3 Å²	139.3	66%	0.664	75%	0.751	S	S	*	*			trans	-55.4	114.3	172.4	45.5	0	0	0	0	107	P21 E25	P21-S23 PolarHBondContact O-N 2.8Å; S23-E25 PolarHBondContact O-N 3.01Å
24	E	62.8	Low	66.3	Low	177 Å²	177	137.4 Å²	137.4	83%	0.827	75%	0.747	S	S	*	*			trans	-72.7	62.6	-175.4	-162.8	178.3	165.2	0	0	109.6	V22	V22-E24 PolarHBondContact O-N 2.8Å
25	E	61.3	Low	66	Low	164 Å²	164	136.7 Å²	136.7	77%	0.766	73%	0.731	S	S	*	*			trans	-112.3	10.2	178.1	-77.5	-169	113.2	0	0	113.3	S23	S23-E25 PolarHBondContact O-N 3.01Å
26	N	57.6	Low	65.8	Low	162 Å²	162	134.4 Å²	134.4	87%	0.866	73%	0.726	S	S	*	*			trans	-116.8	40.1	168.1	-92	44.1	0	0	0	111.7	F28	N26-F28 PolarHBondContact O-N 2.87Å
27	S	62.7	Low	65.5	Low	99 Å²	99	134.6 Å²	134.6	69%	0.692	73%	0.727	S	S	*	*			trans	-71.7	73.8	153.1	-162.5	0	0	0	0	107.6	S29	S27-S29 PolarHBondContact O-N 3.06Å
28	F	57.7	Low	65.2	Low	171 Å²	171	141.1 Å²	141.1	75%	0.75	74%	0.736	S	S	*	*			trans	-64.4	90	156.7	-173.9	-98.3	0	0	0	105.2	N26 T30	N26-F28 PolarHBondContact O-N 2.87Å; F28-T30 HydrophobicContact CD1-CG2 3.76Å; F28-T30 HydrophobicContact CE1-CG2 3.75Å; F28-T30 PolarHBondContact O-N 3.14Å
29	S	66.1	Low	64.6	Low	73 Å²	73	142.1 Å²	142.1	51%	0.51	74%	0.736	S	S	.	*			trans	-51.7	97.8	163.3	172.3	0	0	0	0	106.2	S27 K31	S27-S29 PolarHBondContact O-N 3.06Å; S29-K31 PolarHBondContact O-N 2.91Å; S29-K31 WeakPolarHBondContact OG-CG 3.37Å; S29-K31 PolarHBondContact OG-N 2.93Å
30	T	62.8	Low	64.2	Low	106 Å²	106	142.2 Å²	142.2	65%	0.65	74%	0.741	S	S	*	*			trans	-67.3	79.4	153.5	46.3	0	0	0	0	104.4	F28 R32	F28-T30 HydrophobicContact CD1-CG2 3.76Å; F28-T30 HydrophobicContact CE1-CG2 3.75Å; F28-T30 PolarHBondContact O-N 3.14Å; T30-R32 PolarHBondContact O-N 2.88Å; T30-R32 VanDerWaalsContact C-N 3.32Å
31	K	67.2	Low	63.6	Low	187 Å²	187	146.6 Å²	146.6	81%	0.813	76%	0.76	S	S	*	*			trans	-45.6	110.2	165.1	-81.3	-166.7	179.2	-177.8	0	104.7	S29 F33	S29-K31 PolarHBondContact O-N 2.91Å; S29-K31 WeakPolarHBondContact OG-CG 3.37Å; S29-K31 PolarHBondContact OG-N 2.93Å; K31-F33 PolarHBondContact O-N 2.84Å
32	R	70.7	Confident	63.3	Low	240 Å²	240	148 Å²	148	91%	0.906	76%	0.759	S	S	*	*			trans	-61.1	109	176.2	-70	-177.1	177.1	161.6	-1.3	105.6	T30	T30-R32 PolarHBondContact O-N 2.88Å; T30-R32 VanDerWaalsContact C-N 3.32Å
33	F	62.6	Low	63	Low	143 Å²	143	148.5 Å²	148.5	63%	0.627	76%	0.755	S	S	*	*			trans	45.6	100.5	142.8	-166	-98.3	0	0	0	116.6	K31 S35	K31-F33 PolarHBondContact O-N 2.84Å; F33-S35 VanDerWaalsContact CE1-CB 3.41Å
34	D	59.7	Low	62.9	Low	135 Å²	135	151.4 Å²	151.4	72%	0.722	76%	0.76	S	S	*	*			trans	-105.1	108.2	154.6	-176.5	16.5	0	0	0	109.2	S36	D34-S36 PolarHBondContact O-N 2.86Å; D34-S36 PolarHBondContact OD1-N 3.04Å; D34-S36 VanDerWaalsContact OD2-CB 3.23Å; D34-S36 WeakPolarHBondContact OD2-CB 3.49Å
35	S	63.4	Low	62.9	Low	57 Å²	57	149.9 Å²	149.9	40%	0.399	76%	0.756	S	S	.	*			trans	-67.2	17	174	32.4	0	0	0	0	114.5	F33 K37 R38	F33-S35 VanDerWaalsContact CE1-CB 3.41Å; S35-K37 PolarHBondContact O-N 3.03Å; S35-R38 WeakPolarHBondContact O-CB 3.28Å; S35-R38 PolarHBondContact O-N 2.89Å
36	S	63	Low	63	Low	97 Å²	97	149.1 Å²	149.1	68%	0.678	76%	0.755	S	S	*	*	T	Hydrogen-bonded Turn	trans	-60.9	-5.2	178.8	-170.3	0	0	0	0	114.9	D34	D34-S36 PolarHBondContact O-N 2.86Å; D34-S36 PolarHBondContact OD1-N 3.04Å; D34-S36 VanDerWaalsContact OD2-CB 3.23Å; D34-S36 WeakPolarHBondContact OD2-CB 3.49Å
37	K	61.5	Low	63.3	Low	204 Å²	204	148.2 Å²	148.2	89%	0.887	75%	0.748	S	S	*	*	T	Hydrogen-bonded Turn	trans	-100.9	6.9	167.6	-67.2	-75.8	-174.8	174.1	0	114.6	S35 C39	S35-K37 PolarHBondContact O-N 3.03Å; K37-C39 PolarHBondContact O-N 3.13Å
38	R	65.2	Low	63.4	Low	188 Å²	188	151.7 Å²	151.7	71%	0.709	75%	0.752	S	S	*	*	S	Bend	trans	-90.9	83.9	172	-153	-179.6	-71.4	178.3	-5	108.5	S35 C40	S35-R38 WeakPolarHBondContact O-CB 3.28Å; S35-R38 PolarHBondContact O-N 2.89Å; R38-C40 PolarHBondContact O-N 3.04Å
39	C	61.2	Low	63.8	Low	115 Å²	115	150.2 Å²	150.2	78%	0.777	75%	0.752	S	S	*	*			trans	1.2	100.6	168.7	-62.3	0	0	0	0	116.3	K37	K37-C39 PolarHBondContact O-N 3.13Å
40	C	63.8	Low	63.6	Low	134 Å²	134	156.7 Å²	156.7	91%	0.905	77%	0.772	S	S	*	*			trans	-95.8	95.7	146.7	-70.1	0	0	0	0	107.6	R38	R38-C40 PolarHBondContact O-N 3.04Å
41	K	62.3	Low	63.7	Low	274 Å²	274	161.3 Å²	161.3	100%	1.191	78%	0.783	S	S	*	*			trans	70.1	0	-178.4	-86	-170.4	174.4	177.3	0	117.7

Retrieved 41 of 41 residues in 91.4 ms (Link to these results)

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