A0A087X0E5_HUMAN Loading...

Gametogenetin-binding protein 2

May be involved in spermatogenesis.

AlphaFold DB , UniProt , Accession A0A087X0E5, Species HUMAN (Homo sapiens, Human), Gene GGNBP2, Length 68 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M54.8Low54Low186 Ų186126.4 Ų126.492%0.91673%0.726SS**  0133.70-89.4174.7167.900108R3M1-R3 PolarHBondContact O-N 3.26Å
2A49.7Very low53.9Low90 Ų90123.3 Ų123.374%0.74470%0.7SS**  trans-75.9124.1177.900000110.1
3R52.8Low54Low146 Ų146129.3 Ų129.355%0.55172%0.719SS**  trans-106.5128.1176.2-59.5-172.9-173.1-151.73.7108.5M1 V5 D28M1-R3 PolarHBondContact O-N 3.26Å; R3-V5 PolarHBondContact O-N 2.62Å; R3-D28 IonicContact NE-OD1 3.43Å; R3-D28 IonicContact CZ-OD1 3.4Å; R3-D28 PolarHBondContact NH2-OD1 3.47Å; R3-D28 IonicContact NH2-OD1 2.74Å; R3-D28 PolarHBondContact NE-OD1 3.23Å
4L51.6Low53.7Low147 Ų147133 Ų13377%0.7773%0.728SS**  trans-75.1121174.2-63.7175.5000108.4
5V49.2Very low53.4Low78 Ų78133.2 Ų133.247%0.47372%0.719SS.*  trans-123.7135.8176.6-63.50000109.6R3 L24 I26R3-V5 PolarHBondContact O-N 2.62Å; V5-L24 HydrophobicContact CG2-CD1 3.7Å; V5-I26 HydrophobicContact CG1-CD1 4.12Å; V5-I26 HydrophobicContact CG2-CD1 4.15Å
6A57.5Low53.3Low88 Ų88132 Ų13273%0.72772%0.72SS**  trans-94.1134.1171.300000108.6
7V58.7Low53.1Low108 Ų108133.4 Ų133.466%0.65572%0.718SS**  trans-106111.1173.5-1800000107.2
8C55.8Low53.1Low103 Ų103134.3 Ų134.370%0.69672%0.717SS**PPolyproline II helixtrans-93.2128.3170.8-58.70000108.4
9R53.3Low53.1Low186 Ų186139.4 Ų139.470%0.70273%0.725SS**PPolyproline II helixtrans-88126.8165.1-72.5-178.3172.1176.9-2.1107.5G11 E12R9-G11 PolarHBondContact O-N 3.03Å; R9-E12 PolarHBondContact O-N 2.88Å
10D49.8Very low53.2Low183 Ų183142.7 Ų142.798%0.97973%0.728SS**THydrogen-bonded Turntrans-55.8121.8174.7-119.7-76.2000109.4
11G60.3Low53.2Low75 Ų75142.8 Ų142.877%0.77373%0.725SS**THydrogen-bonded Turntrans99.84.9179.700000117.3R9R9-G11 PolarHBondContact O-N 3.03Å
12E53.7Low53.8Low90 Ų90140.1 Ų140.142%0.42171%0.714SS.*  trans-114.964176.4-72.8-166.9147.500111.7R9 E14 F15R9-E12 PolarHBondContact O-N 2.88Å; E12-E14 PolarHBondContact O-N 2.67Å; E12-F15 HydrophobicContact CB-CD2 3.82Å; E12-F15 HydrophobicContact CB-CE2 4.37Å; E12-F15 HydrophobicContact CG-CD2 3.71Å; E12-F15 HydrophobicContact CG-CE2 3.77Å; E12-F15 WeakPolarHBondContact OE1-CE2 3.4Å
13E54.4Low54Low201 Ų201141.5 Ų141.594%0.93972%0.715SS**THydrogen-bonded Turntrans-74.6-8.7173.4-72.6-171.7125.400113.5
14E50Low54.2Low181 Ų181138.4 Ų138.485%0.84671%0.709SS**THydrogen-bonded Turntrans-127.426.9-172.2-80-177.6173.200115.4E12E12-E14 PolarHBondContact O-N 2.67Å
15F48.9Very low54.4Low136 Ų136140 Ų14060%0.59671%0.706SS**SBendtrans-96113160.7-73.1-84.4000108.6E12 F17E12-F15 HydrophobicContact CB-CD2 3.82Å; E12-F15 HydrophobicContact CB-CE2 4.37Å; E12-F15 HydrophobicContact CG-CD2 3.71Å; E12-F15 HydrophobicContact CG-CE2 3.77Å; E12-F15 WeakPolarHBondContact OE1-CE2 3.4Å; F15-F17 PolarHBondContact O-N 3.07Å
16P51.8Low55.1Low114 Ų114138.2 Ų138.274%0.7469%0.693SS**  trans-57.5116.6171.324-29.9000106.1E18P16-E18 PolarHBondContact O-N 3.26Å
17F51.2Low55.3Low155 Ų155138.8 Ų138.868%0.6868%0.684SS**  trans-54.690174.7-69.4-92.3000108.2F15 R19F15-F17 PolarHBondContact O-N 3.07Å; F17-R19 PolarHBondContact O-N 2.95Å; F17-R19 VanDerWaalsContact C-N 3.26Å
18E52.7Low55.3Low150 Ų150138.8 Ų138.870%0.70168%0.68SS**  trans-59.7105157.4-79.5-166.7177.300103.7P16 R20P16-E18 PolarHBondContact O-N 3.26Å; E18-R20 PolarHBondContact O-N 2.93Å
19R53.3Low55.4Low232 Ų232139.3 Ų139.388%0.87568%0.681SS**  trans-58.654.8-168.1-64.8172.2168.4155.7-5.9113.7F17 Q21F17-R19 PolarHBondContact O-N 2.95Å; F17-R19 VanDerWaalsContact C-N 3.26Å; R19-Q21 PolarHBondContact O-N 3.13Å
20R53.7Low55.5Low205 Ų205136.4 Ų136.477%0.77468%0.679SS**  trans-83.474.3170.6-63-172.4-176-134.22.3106.5E18 I22E18-R20 PolarHBondContact O-N 2.93Å; R20-I22 PolarHBondContact O-N 2.83Å; R20-I22 VanDerWaalsContact O-N 3.13Å
21Q54Low55.7Low144 Ų144133.8 Ų133.867%0.67367%0.669SS**  trans-60.7114166-65.7-178.8200106.8R19 P23R19-Q21 PolarHBondContact O-N 3.13Å; Q21-P23 WeakPolarHBondContact O-CD 3.41Å
22I67.2Low55.7Low131 Ų131136.7 Ų136.767%0.67267%0.671SS**  trans-87.8116.4172.8-59.1172.9000106R20 L24R20-I22 PolarHBondContact O-N 2.83Å; R20-I22 VanDerWaalsContact O-N 3.13Å; I22-L24 HydrophobicContact CG2-CD2 4.47Å; I22-L24 PolarHBondContact O-N 2.74Å
23P53.6Low55.7Low119 Ų119137.5 Ų137.577%0.77369%0.687SS**  trans-63.3106.3173.8-16.730.1000108.5Q21Q21-P23 WeakPolarHBondContact O-CD 3.41Å
24L58.1Low55.8Low81 Ų81130.1 Ų130.142%0.42467%0.665SS.*  trans-91115.2171.5-70.8171.4000107.7V5 I22 I26V5-L24 HydrophobicContact CG2-CD1 3.7Å; I22-L24 HydrophobicContact CG2-CD2 4.47Å; I22-L24 PolarHBondContact O-N 2.74Å; L24-I26 PolarHBondContact O-N 2.9Å; L24-I26 VanDerWaalsContact O-N 3.11Å; L24-I26 HydrophobicContact CB-CG1 3.95Å; L24-I26 HydrophobicContact CB-CD1 4.23Å
25Y56.3Low56Low179 Ų179128.2 Ų128.270%0.70267%0.668SS**  trans-77.694.3168-161.6-92.1000107.3D27Y25-D27 WeakPolarHBondContact CE1-OD1 3.15Å
26I62.6Low56.2Low41 Ų41124.9 Ų124.921%0.2167%0.673CS.*  trans-96.5111.1177-57.9172.9000106.4V5 L24 L30V5-I26 HydrophobicContact CG1-CD1 4.12Å; V5-I26 HydrophobicContact CG2-CD1 4.15Å; L24-I26 PolarHBondContact O-N 2.9Å; L24-I26 VanDerWaalsContact O-N 3.11Å; L24-I26 HydrophobicContact CB-CG1 3.95Å; L24-I26 HydrophobicContact CB-CD1 4.23Å; I26-L30 HydrophobicContact CG2-CD1 3.88Å; I26-L30 HydrophobicContact CG2-CD2 3.44Å; I26-L30 VanDerWaalsContact CG2-CD2 3.44Å; I26-L30 HydrophobicContact CG2-CG 3.46Å; I26-L30 VanDerWaalsContact CG2-CG 3.46Å
27D61.1Low56.6Low101 Ų101131.4 Ų131.454%0.5468%0.683SS.*  trans-62.5135.7164.7-69-58.9000108.2Y25 T29Y25-D27 WeakPolarHBondContact CE1-OD1 3.15Å; D27-T29 PolarHBondContact O-N 3.11Å
28D59Low56.8Low107 Ų107128.6 Ų128.657%0.57269%0.688SS**SBendtrans-60.31.3-172.9-72.7-71.1000114.2R3 L30R3-D28 IonicContact NE-OD1 3.43Å; R3-D28 IonicContact CZ-OD1 3.4Å; R3-D28 PolarHBondContact NH2-OD1 3.47Å; R3-D28 IonicContact NH2-OD1 2.74Å; R3-D28 PolarHBondContact NE-OD1 3.23Å; D28-L30 PolarHBondContact O-N 3.13Å; D28-L30 VanDerWaalsContact O-N 3.11Å
29T58.9Low57.3Low114 Ų114124 Ų12470%0.69968%0.681SS**  trans-81.347.2168.762.90000111.8D27 T31D27-T29 PolarHBondContact O-N 3.11Å; T29-T31 PolarHBondContact O-N 3.44Å; T29-T31 PolarHBondContact O-OG1 3.43Å
30L55.5Low57.7Low126 Ų126119.3 Ų119.366%0.6668%0.68SS**  trans-64.486166.5-78.9175.8000108.6I26 D28 V32I26-L30 HydrophobicContact CG2-CD1 3.88Å; I26-L30 HydrophobicContact CG2-CD2 3.44Å; I26-L30 VanDerWaalsContact CG2-CD2 3.44Å; I26-L30 HydrophobicContact CG2-CG 3.46Å; I26-L30 VanDerWaalsContact CG2-CG 3.46Å; D28-L30 PolarHBondContact O-N 3.13Å; D28-L30 VanDerWaalsContact O-N 3.11Å; L30-V32 PolarHBondContact O-N 3.3Å
31T53.8Low57.9Low127 Ų127114.2 Ų114.278%0.77968%0.682SS**  trans-73.6112.1167.6-1.20000106.5T29 S33T29-T31 PolarHBondContact O-N 3.44Å; T29-T31 PolarHBondContact O-OG1 3.43Å; T31-S33 VanDerWaalsContact C-N 3.32Å; T31-S33 PolarHBondContact O-N 2.93Å
32V61.1Low58.1Low136 Ų136111.1 Ų111.182%0.82468%0.681SS**  trans-53.3105.3162.3175.30000105.7L30 G34L30-V32 PolarHBondContact O-N 3.3Å; V32-G34 VanDerWaalsContact C-N 3.33Å; V32-G34 PolarHBondContact O-N 3.09Å
33S52.8Low57.7Low107 Ų107110.8 Ų110.875%0.74869%0.688SS**  trans-63.2103.217450.80000105.7T31T31-S33 VanDerWaalsContact C-N 3.32Å; T31-S33 PolarHBondContact O-N 2.93Å
34G57.1Low58Low47 Ų47113.1 Ų113.149%0.48569%0.693SS.*  trans-50.8167.4166.700000110.3V32 G36V32-G34 VanDerWaalsContact C-N 3.33Å; V32-G34 PolarHBondContact O-N 3.09Å; G34-G36 WeakPolarHBondContact O-CA 3.36Å; G34-G36 PolarHBondContact O-N 2.74Å
35P53.5Low58Low140 Ų140113.5 Ų113.591%0.90971%0.707SS**SBendtrans-45.6105.5-167.220.8-33.4000110R37P35-R37 VanDerWaalsContact O-N 3.11Å; P35-R37 PolarHBondContact O-N 2.75Å
36G53.8Low58Low67 Ų67109.4 Ų109.469%0.69171%0.711SS**  trans-59.7120-163.900000109G34 A38G34-G36 WeakPolarHBondContact O-CA 3.36Å; G34-G36 PolarHBondContact O-N 2.74Å; G36-A38 VanDerWaalsContact C-N 3.35Å; G36-A38 PolarHBondContact O-N 3.43Å
37R58.9Low58Low250 Ų250113.6 Ų113.694%0.94374%0.738SS**  trans-64.6104.3166.1-166174.5177.3-159.8-1105.7P35 G39P35-R37 VanDerWaalsContact O-N 3.11Å; P35-R37 PolarHBondContact O-N 2.75Å; R37-G39 PolarHBondContact O-N 3.11Å
38A56.4Low57.6Low97 Ų97113.7 Ų113.780%0.80275%0.746SS**  trans-52.7107.4178.900000108.4G36G36-A38 VanDerWaalsContact C-N 3.35Å; G36-A38 PolarHBondContact O-N 3.43Å
39G63Low57.8Low53 Ų53113.9 Ų113.955%0.54675%0.754SS.*  trans-58.4160.8163.900000109R37 A41R37-G39 PolarHBondContact O-N 3.11Å; G39-A41 PolarHBondContact O-N 2.78Å; G39-A41 VanDerWaalsContact O-N 3.09Å
40P61Low57.8Low133 Ų133114 Ų11486%0.86476%0.756SS**  trans-53126.2176.123.7-32.1000108.3A42P40-A42 PolarHBondContact O-N 3.35Å
41A58.4Low58Low98 Ų98113.6 Ų113.681%0.8176%0.761SS**  trans-54.1108.717900000107.6G39G39-A41 PolarHBondContact O-N 2.78Å; G39-A41 VanDerWaalsContact O-N 3.09Å
42A58.8Low58.1Low79 Ų79112.1 Ų112.165%0.65375%0.754SS**  trans-54.3131.8163.900000105.7P40 L44P40-A42 PolarHBondContact O-N 3.35Å; A42-L44 PolarHBondContact O-N 3.21Å
43P58.1Low57.9Low124 Ų124110.2 Ų110.281%0.80574%0.744SS**  trans-56.6118.3176.723.8-31.4000106.2A45P43-A45 VanDerWaalsContact C-N 3.32Å; P43-A45 PolarHBondContact O-N 3.09Å
44L58.9Low58.1Low169 Ų169111.7 Ų111.789%0.88575%0.751SS**  trans-55.8106.6170.8-68.7167.7000104.8A42 A46A42-L44 PolarHBondContact O-N 3.21Å; L44-A46 PolarHBondContact O-N 2.87Å
45A57.9Low58Low88 Ų88113.5 Ų113.573%0.72777%0.77SS**  trans-56.1112.5169.800000104.9P43 V47P43-A45 VanDerWaalsContact C-N 3.32Å; P43-A45 PolarHBondContact O-N 3.09Å; A45-V47 PolarHBondContact O-N 3.2Å
46A58.3Low57.8Low94 Ų94117.2 Ų117.278%0.77777%0.766SS**  trans-66.987.2-17900000107.3L44 S48L44-A46 PolarHBondContact O-N 2.87Å; A46-S48 PolarHBondContact O-N 3.1Å; A46-S48 VanDerWaalsContact O-N 3.07Å
47V61.4Low57.6Low128 Ų128118.5 Ų118.578%0.77677%0.77SS**  trans-64.1109.5163167.80000104.7A45A45-V47 PolarHBondContact O-N 3.2Å
48S53.1Low57.2Low103 Ų103114 Ų11472%0.7276%0.764SS**PPolyproline II helixtrans-55.1127.3175.5-53.70000108.2A46A46-S48 PolarHBondContact O-N 3.1Å; A46-S48 VanDerWaalsContact O-N 3.07Å
49P63.9Low56.9Low112 Ų112120.5 Ų120.573%0.72777%0.768SS**PPolyproline II helixtrans-59.9146.7176.624.3-32.3000109.6
50P58.1Low56.2Low115 Ų115125.2 Ų125.275%0.74779%0.786SS**PPolyproline II helixtrans-58.2144.1175.125.4-33.4000110.1
51P59.9Low55.6Low119 Ų119122.3 Ų122.377%0.77378%0.781SS**PPolyproline II helixtrans-60.5140.3-179.224.7-33.1000110.7
52P56.7Low54.9Low95 Ų95126.5 Ų126.562%0.61778%0.783SS**PPolyproline II helixtrans-65.5148.6179.126.8-33.5000111
53P55.8Low54.3Low96 Ų96133.7 Ų133.762%0.62379%0.794SS**PPolyproline II helixtrans-60.8144.7173.725.3-32.8000110.6G55P53-G55 PolarHBondContact O-N 3.26Å
54P57.7Low53.7Low138 Ų138133.9 Ų133.990%0.89679%0.792SS**THydrogen-bonded Turntrans-61.2127.1179.124.5-31.8000110
55G55Low52.8Low85 Ų85131.2 Ų131.288%0.87679%0.786SS**THydrogen-bonded Turntrans117.3-3.6171.200000116.9P53P53-G55 PolarHBondContact O-N 3.26Å
56R49.5Very low51.9Low218 Ų218132.9 Ų132.982%0.82379%0.791SS**  trans-109.393.6174.8-116.9178.2166.4-169.6-4.6111.1L58R56-L58 PolarHBondContact O-N 2.83Å
57A49Very low51.1Low95 Ų95136 Ų13679%0.78580%0.795SS**  trans-62.9116169.700000109.7R59A57-R59 PolarHBondContact O-N 2.9Å; A57-R59 VanDerWaalsContact O-N 3.13Å
58L51.1Low50.1Low155 Ų155139 Ų13981%0.81282%0.821SS**  trans-68.9104.6165-99.584.4000107.7R56 T60R56-L58 PolarHBondContact O-N 2.83Å; L58-T60 PolarHBondContact O-N 2.93Å
59R49.3Very low49.9Very low233 Ų233140.8 Ų140.888%0.87983%0.826SS**  trans-73.3108163.7-84.1-176.2173.4-101.90.9108A57 G61A57-R59 PolarHBondContact O-N 2.9Å; A57-R59 VanDerWaalsContact O-N 3.13Å; R59-G61 PolarHBondContact O-N 3.08Å; R59-G61 VanDerWaalsContact O-N 3.09Å
60T47.8Very low49.2Very low153 Ų153142.3 Ų142.394%0.93983%0.831SS**THydrogen-bonded Turntrans-57.3104.9168.7-27.60000108.6L58L58-T60 PolarHBondContact O-N 2.93Å
61G49Very low48.7Very low72 Ų72143.8 Ų143.874%0.74284%0.836SS**THydrogen-bonded Turntrans162.2-6.5171.700000121.2R59 R63R59-G61 PolarHBondContact O-N 3.08Å; R59-G61 VanDerWaalsContact O-N 3.09Å; G61-R63 PolarHBondContact O-N 3.29Å; G61-R63 VanDerWaalsContact O-N 3.1Å
62E44.4Very low48Very low186 Ų186145.2 Ų145.287%0.86984%0.84SS**  trans-85.492.6179.2-100.5169.8103.400112V64E62-V64 PolarHBondContact O-N 3.01Å
63R45.7Very low47.5Very low230 Ų230148.4 Ų148.487%0.86885%0.854SS**  trans-61.5107.9155.9-129.1-174.1-83.5-164-5.3106.4G61 C65G61-R63 PolarHBondContact O-N 3.29Å; G61-R63 VanDerWaalsContact O-N 3.1Å; R63-C65 PolarHBondContact O-N 3.11Å
64V45.2Very low46.9Very low127 Ų127151.9 Ų151.977%0.7787%0.869SS**  trans-71.1100.4172-179.70000107.1E62 C66E62-V64 PolarHBondContact O-N 3.01Å; V64-C66 PolarHBondContact O-N 2.87Å; V64-C66 VanDerWaalsContact O-N 3.08Å
65C40.4Very low46.2Very low113 Ų113152.9 Ų152.976%0.76487%0.867SS**  trans-63.5105.6167.6-68.90000108R63 N67R63-C65 PolarHBondContact O-N 3.11Å; C65-N67 PolarHBondContact O-N 2.77Å
66C38.8Very low45.5Very low124 Ų124158.1 Ų158.184%0.83887%0.867SS**  trans-62.2117.6161.3-59.60000106.9V64V64-C66 PolarHBondContact O-N 2.87Å; V64-C66 VanDerWaalsContact O-N 3.08Å
67N40.4Very low45.2Very low160 Ų160153.1 Ų153.186%0.85687%0.87SS**  trans-85.2140.9171.9-135.7-27.1000109C65C65-N67 PolarHBondContact O-N 2.77Å
68S40.7Very low44.8Very low189 Ų189158.4 Ų158.4100%1.32288%0.878SS**  trans-490-161.5-47.30000117.7

Retrieved 68 of 68 residues in 71.6 ms (Link to these results)