A0A087X2H9_HUMAN Loading...

WD repeat domain 13

AlphaFold DB , UniProt , Accession A0A087X2H9, Species HUMAN (Homo sapiens, Human), Gene WDR13, Length 43 aa.

>A0A087X2H9_HUMAN|A0A087X2H9|WDR13
MAAVWQQVLAVDASFGRSISAGAASCCGRMPRLGTPQRCVGST
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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M50.1Low54.5Low235 Ų235111.8 Ų111.8100%1.15861%0.614SS**  044.80-154.2169.1-163.400111.7
2A51Low54.8Low74 Ų74112 Ų11261%0.61261%0.613SS**  trans-120.8-15.9-177.600000113.3
3A54.8Low55.1Low68 Ų68108.2 Ų108.256%0.56261%0.606SS**Hα-helixtrans-75.3-27.6-174.700000114W5 Q6 Q7A3-W5 PolarHBondContact O-N 3.5Å; A3-Q6 PolarHBondContact O-N 3.5Å; A3-Q7 WeakPolarHBondContact O-CG 3.45Å; A3-Q7 PolarHBondContact O-N 2.97Å
4V55.5Low55.2Low90 Ų90106.1 Ų106.155%0.54560%0.602SS.*Hα-helixtrans-66.5-39.8-1781790000111.2Q6 Q7 V8V4-Q6 VanDerWaalsContact C-N 3.33Å; V4-Q6 PolarHBondContact O-N 3.02Å; V4-Q7 WeakPolarHBondContact O-CB 3.35Å; V4-Q7 PolarHBondContact O-N 3.02Å; V4-V8 WeakPolarHBondContact O-CG2 3.25Å; V4-V8 PolarHBondContact O-N 3.35Å
5W52.5Low55.3Low185 Ų185108 Ų10870%0.70160%0.601SS**Hα-helixtrans-64.6-37.2179.5-67.7105.3000112.7A3 Q7 V8 L9A3-W5 PolarHBondContact O-N 3.5Å; W5-Q7 VanDerWaalsContact C-N 3.32Å; W5-Q7 PolarHBondContact O-N 3.41Å; W5-V8 PolarHBondContact O-N 3.41Å; W5-L9 WeakPolarHBondContact O-CG 3.43Å; W5-L9 PolarHBondContact O-N 3.38Å
6Q55.3Low55.3Low133 Ų133103.6 Ų103.662%0.62159%0.588SS**Hα-helixtrans-67.9-33.7175.9-66.5-67.2-13.600111.9A3 V4 A10A3-Q6 PolarHBondContact O-N 3.5Å; V4-Q6 VanDerWaalsContact C-N 3.33Å; V4-Q6 PolarHBondContact O-N 3.02Å; Q6-A10 VanDerWaalsContact O-CB 3.25Å; Q6-A10 WeakPolarHBondContact O-CB 3.4Å; Q6-A10 PolarHBondContact O-N 3.17Å
7Q50.8Low55.1Low124 Ų124109.5 Ų109.558%0.57960%0.599SS**Hα-helixtrans-68.8-41.4174.3-68.7171.8-15.100111.5A3 V4 W5 A10 V11A3-Q7 WeakPolarHBondContact O-CG 3.45Å; A3-Q7 PolarHBondContact O-N 2.97Å; V4-Q7 WeakPolarHBondContact O-CB 3.35Å; V4-Q7 PolarHBondContact O-N 3.02Å; W5-Q7 VanDerWaalsContact C-N 3.32Å; W5-Q7 PolarHBondContact O-N 3.41Å; Q7-A10 PolarHBondContact O-N 3.25Å; Q7-V11 WeakPolarHBondContact O-CB 3.39Å; Q7-V11 WeakPolarHBondContact O-CG2 3.18Å; Q7-V11 PolarHBondContact O-N 2.89Å
8V58.5Low54.9Low83 Ų83107.7 Ų107.750%0.50360%0.595SS.*Hα-helixtrans-63.4-44.7177175.40000110.9V4 W5 V11 D12V4-V8 WeakPolarHBondContact O-CG2 3.25Å; V4-V8 PolarHBondContact O-N 3.35Å; W5-V8 PolarHBondContact O-N 3.41Å; V8-V11 PolarHBondContact O-N 3.5Å; V8-D12 WeakPolarHBondContact O-CB 3.33Å; V8-D12 PolarHBondContact O-N 3.03Å
9L54.9Low54.8Low107 Ų107108 Ų10856%0.5660%0.595SS**Hα-helixtrans-66.6-37.1177.3-68.8170.2000112.7W5 D12 A13W5-L9 WeakPolarHBondContact O-CG 3.43Å; W5-L9 PolarHBondContact O-N 3.38Å; L9-D12 PolarHBondContact O-N 2.75Å; L9-A13 WeakPolarHBondContact O-CB 3.33Å; L9-A13 PolarHBondContact O-N 3.42Å
10A56.9Low54.6Low53 Ų53106.8 Ų106.844%0.43859%0.594SS.*Hα-helixtrans-69.1-37.2176.200000112.4Q6 Q7 S14Q6-A10 VanDerWaalsContact O-CB 3.25Å; Q6-A10 WeakPolarHBondContact O-CB 3.4Å; Q6-A10 PolarHBondContact O-N 3.17Å; Q7-A10 PolarHBondContact O-N 3.25Å; A10-S14 WeakPolarHBondContact O-CB 3.38Å; A10-S14 PolarHBondContact O-N 2.91Å; A10-S14 PolarHBondContact O-OG 3.37Å
11V59.4Low54.4Low78 Ų78104.7 Ų104.747%0.47359%0.591SS.*Hα-helixtrans-67.4-45174.2171.30000110Q7 V8 S14 F15Q7-V11 WeakPolarHBondContact O-CB 3.39Å; Q7-V11 WeakPolarHBondContact O-CG2 3.18Å; Q7-V11 PolarHBondContact O-N 2.89Å; V8-V11 PolarHBondContact O-N 3.5Å; V11-S14 PolarHBondContact O-N 2.93Å; V11-S14 VanDerWaalsContact O-N 3.15Å; V11-F15 HydrophobicContact CG1-CD2 3.64Å; V11-F15 HydrophobicContact CG1-CE2 3.83Å; V11-F15 WeakPolarHBondContact O-CB 3.43Å; V11-F15 WeakPolarHBondContact O-CD2 3.17Å; V11-F15 PolarHBondContact O-N 2.72Å
12D57.8Low54.4Low114 Ų11495.2 Ų95.261%0.6155%0.553SS**Hα-helixtrans-61.8-44.8177.3-168.8-98.4000111.9V8 L9 S14 F15 G16V8-D12 WeakPolarHBondContact O-CB 3.33Å; V8-D12 PolarHBondContact O-N 3.03Å; L9-D12 PolarHBondContact O-N 2.75Å; D12-S14 VanDerWaalsContact C-N 3.29Å; D12-S14 PolarHBondContact O-N 2.78Å; D12-F15 PolarHBondContact O-N 3.28Å; D12-G16 PolarHBondContact O-N 2.96Å
13A58.7Low54.2Low62 Ų6293.5 Ų93.551%0.51254%0.539SS..Hα-helixtrans-62.5-35.8174.300000112.6L9 R17L9-A13 WeakPolarHBondContact O-CB 3.33Å; L9-A13 PolarHBondContact O-N 3.42Å; A13-R17 WeakPolarHBondContact O-CB 3.17Å; A13-R17 PolarHBondContact O-N 2.85Å
14S57.3Low54Low79 Ų7993.9 Ų93.955%0.55254%0.542SS*.Hα-helixtrans-73.6-39.2177.4-58.40000112.1A10 V11 D12 S18A10-S14 WeakPolarHBondContact O-CB 3.38Å; A10-S14 PolarHBondContact O-N 2.91Å; A10-S14 PolarHBondContact O-OG 3.37Å; V11-S14 PolarHBondContact O-N 2.93Å; V11-S14 VanDerWaalsContact O-N 3.15Å; D12-S14 VanDerWaalsContact C-N 3.29Å; D12-S14 PolarHBondContact O-N 2.78Å; S14-S18 WeakPolarHBondContact O-CB 3.23Å; S14-S18 PolarHBondContact O-N 3.3Å
15F56.2Low53.8Low135 Ų13594.4 Ų94.459%0.59255%0.55SS*.Hα-helixtrans-66.6-45.2172.5-95.3-90000111.3V11 D12 R17 S18 I19V11-F15 HydrophobicContact CG1-CD2 3.64Å; V11-F15 HydrophobicContact CG1-CE2 3.83Å; V11-F15 WeakPolarHBondContact O-CB 3.43Å; V11-F15 WeakPolarHBondContact O-CD2 3.17Å; V11-F15 PolarHBondContact O-N 2.72Å; D12-F15 PolarHBondContact O-N 3.28Å; F15-R17 VanDerWaalsContact C-N 3.33Å; F15-R17 PolarHBondContact O-N 3.35Å; F15-S18 WeakPolarHBondContact O-CB 3.46Å; F15-S18 PolarHBondContact O-N 2.8Å; F15-I19 WeakPolarHBondContact O-CB 3.4Å; F15-I19 VanDerWaalsContact O-CG1 3.23Å; F15-I19 WeakPolarHBondContact O-CG1 3.46Å; F15-I19 PolarHBondContact O-N 3.15Å
16G55.4Low53.6Low38 Ų3887.2 Ų87.239%0.39253%0.527SS..Hα-helixtrans-60.7-40174.600000112.5D12 I19 S20D12-G16 PolarHBondContact O-N 2.96Å; G16-I19 PolarHBondContact O-N 3.47Å; G16-S20 WeakPolarHBondContact O-CB 3.34Å; G16-S20 PolarHBondContact O-N 2.85Å
17R51.2Low53.4Low203 Ų20385.6 Ų85.677%0.76653%0.529SS*.Hα-helixtrans-73.4-33.9176.5-164.2170.1-179.2159.8-1112.8A13 F15 S20 A21A13-R17 WeakPolarHBondContact O-CB 3.17Å; A13-R17 PolarHBondContact O-N 2.85Å; F15-R17 VanDerWaalsContact C-N 3.33Å; F15-R17 PolarHBondContact O-N 3.35Å; R17-S20 PolarHBondContact O-N 3.37Å; R17-A21 VanDerWaalsContact O-CB 3.3Å; R17-A21 WeakPolarHBondContact O-CB 2.86Å; R17-A21 PolarHBondContact O-N 2.77Å
18S52.3Low53.4Low77 Ų7783.2 Ų83.254%0.53854%0.538SS..Hα-helixtrans-65.5-42.9170.3169.90000111.7S14 F15 S20 G22S14-S18 WeakPolarHBondContact O-CB 3.23Å; S14-S18 PolarHBondContact O-N 3.3Å; F15-S18 WeakPolarHBondContact O-CB 3.46Å; F15-S18 PolarHBondContact O-N 2.8Å; S18-S20 VanDerWaalsContact C-N 3.33Å; S18-G22 WeakPolarHBondContact O-CA 3.29Å; S18-G22 PolarHBondContact O-N 2.87Å
19I53.1Low53.2Low114 Ų11488.7 Ų88.759%0.58555%0.55SS*.Hα-helixtrans-64.1-41.6172.6-68.1168.6000109.4F15 G16 A23F15-I19 WeakPolarHBondContact O-CB 3.4Å; F15-I19 VanDerWaalsContact O-CG1 3.23Å; F15-I19 WeakPolarHBondContact O-CG1 3.46Å; F15-I19 PolarHBondContact O-N 3.15Å; G16-I19 PolarHBondContact O-N 3.47Å; I19-A23 WeakPolarHBondContact O-CA 3.33Å; I19-A23 WeakPolarHBondContact O-CB 3.3Å; I19-A23 PolarHBondContact O-N 3.03Å
20S50.4Low52.9Low84 Ų8492.3 Ų92.359%0.58757%0.566SS**Hα-helixtrans-72.7-34.9-178.3-153.20000113.4G16 R17 S18 A24G16-S20 WeakPolarHBondContact O-CB 3.34Å; G16-S20 PolarHBondContact O-N 2.85Å; R17-S20 PolarHBondContact O-N 3.37Å; S18-S20 VanDerWaalsContact C-N 3.33Å; S20-A24 VanDerWaalsContact O-CB 3.29Å; S20-A24 WeakPolarHBondContact O-CB 3.37Å; S20-A24 PolarHBondContact O-N 2.73Å
21A49.7Very low52.6Low63 Ų6393.5 Ų93.552%0.52157%0.569SS.*Hα-helixtrans-80.8-39.8176.300000112.6R17 A24 S25R17-A21 VanDerWaalsContact O-CB 3.3Å; R17-A21 WeakPolarHBondContact O-CB 2.86Å; R17-A21 PolarHBondContact O-N 2.77Å; A21-A24 PolarHBondContact O-N 2.68Å; A21-S25 PolarHBondContact O-N 3.13Å
22G50Low52.5Low35 Ų35100.2 Ų100.236%0.36159%0.586SS.*Hα-helixtrans-68.4-38.8172.900000112.1S18 S25 C26S18-G22 WeakPolarHBondContact O-CA 3.29Å; S18-G22 PolarHBondContact O-N 2.87Å; G22-S25 PolarHBondContact O-N 3.03Å; G22-C26 WeakPolarHBondContact O-CB 2.97Å; G22-C26 PolarHBondContact O-N 3.44Å; G22-C26 PolarHBondContact O-SG 2.94Å
23A48.3Very low52.2Low38 Ų38103.8 Ų103.831%0.31460%0.604SS.*Hα-helixtrans-64.8-46.1170.100000110.2I19 S25 C26 C27I19-A23 WeakPolarHBondContact O-CA 3.33Å; I19-A23 WeakPolarHBondContact O-CB 3.3Å; I19-A23 PolarHBondContact O-N 3.03Å; A23-S25 VanDerWaalsContact C-N 3.26Å; A23-S25 PolarHBondContact O-N 3.24Å; A23-C26 CarbonylContact O-C 3.54Å; A23-C26 PolarHBondContact O-N 3.06Å; A23-C26 VanDerWaalsContact O-N 3.13Å; A23-C27 VanDerWaalsContact C-SG 3.57Å; A23-C27 WeakPolarHBondContact O-CA 3.5Å; A23-C27 WeakPolarHBondContact O-CB 3.29Å; A23-C27 PolarHBondContact O-N 3.15Å; A23-C27 PolarHBondContact O-SG 3.31Å
24A50.3Low52Low77 Ų77104.4 Ų104.464%0.63662%0.617SS**Hα-helixtrans-58.8-36.3177.900000113.3S20 A21S20-A24 VanDerWaalsContact O-CB 3.29Å; S20-A24 WeakPolarHBondContact O-CB 3.37Å; S20-A24 PolarHBondContact O-N 2.73Å; A21-A24 PolarHBondContact O-N 2.68Å
25S51Low51.7Low100 Ų100105.1 Ų105.170%0.69962%0.618SS**Hα-helixtrans-72.4-34.1176.7-169.60000113.2A21 G22 A23A21-S25 PolarHBondContact O-N 3.13Å; G22-S25 PolarHBondContact O-N 3.03Å; A23-S25 VanDerWaalsContact C-N 3.26Å; A23-S25 PolarHBondContact O-N 3.24Å
26C48.7Very low51.5Low34 Ų34104.7 Ų104.723%0.2363%0.629CS.*Hα-helixtrans-99.9-9.5-177.2-41.70000113G22 A23 G28 R29 C39G22-C26 WeakPolarHBondContact O-CB 2.97Å; G22-C26 PolarHBondContact O-N 3.44Å; G22-C26 PolarHBondContact O-SG 2.94Å; A23-C26 CarbonylContact O-C 3.54Å; A23-C26 PolarHBondContact O-N 3.06Å; A23-C26 VanDerWaalsContact O-N 3.13Å; C26-G28 PolarHBondContact O-N 3.4Å; C26-R29 PolarHBondContact O-N 3.19Å; C26-C39 WeakPolarHBondContact CB-SG 3.37Å; C26-C39 WeakPolarHBondContact SG-CB 3.43Å; C26-C39 CovalentContact SG-SG 2.07Å; C26-C39 PolarHBondContact SG-SG 2.85Å
27C50.1Low51.8Low99 Ų99107.3 Ų107.367%0.66963%0.631SS**THydrogen-bonded Turntrans-78.56.9179.8-77.90000114.6A23 R29A23-C27 VanDerWaalsContact C-SG 3.57Å; A23-C27 WeakPolarHBondContact O-CA 3.5Å; A23-C27 WeakPolarHBondContact O-CB 3.29Å; A23-C27 PolarHBondContact O-N 3.15Å; A23-C27 PolarHBondContact O-SG 3.31Å; C27-R29 VanDerWaalsContact C-N 3.31Å
28G51.2Low52Low74 Ų74108.3 Ų108.376%0.76364%0.635SS**THydrogen-bonded Turntrans-77.3-19.1162.100000112.9C26C26-G28 PolarHBondContact O-N 3.4Å
29R54.8Low52Low199 Ų199108.3 Ų108.375%0.75163%0.634SS**SBendtrans-144.7103.6-177.7-82.7-179.1167.4174.5-4.4110.7C26 C27 P31C26-R29 PolarHBondContact O-N 3.19Å; C27-R29 VanDerWaalsContact C-N 3.31Å; R29-P31 WeakPolarHBondContact O-CD 3.21Å; R29-P31 VanDerWaalsContact O-N 3.13Å
30M47.7Very low52.1Low182 Ų182109 Ų10990%0.89764%0.642SS**  trans-45.7117.3169.1-145.7147.6-173.600109.9R32M30-R32 PolarHBondContact O-N 2.94Å
31P52Low52.2Low78 Ų78108.1 Ų108.151%0.50665%0.647SS.*  trans-66.9120.1179.85.8-2.3000108.4R29 L33 Q37R29-P31 WeakPolarHBondContact O-CD 3.21Å; R29-P31 VanDerWaalsContact O-N 3.13Å; P31-L33 PolarHBondContact O-N 3.2Å; P31-Q37 HydrophobicContact CB-CG 4.49Å
32R56.2Low51.9Low219 Ų219110.7 Ų110.783%0.82666%0.661SS**  trans-62.4128172.5-70.9-173.7171.3-155-2.2108.2M30 G34 T35M30-R32 PolarHBondContact O-N 2.94Å; R32-G34 VanDerWaalsContact C-N 3.31Å; R32-G34 PolarHBondContact O-N 3.23Å; R32-T35 PolarHBondContact O-N 2.07Å
33L51Low51.6Low190 Ų190118.7 Ų118.7100%0.99570%0.704SS**THydrogen-bonded Turntrans-57.786.6-178-156.585.5000110P31P31-L33 PolarHBondContact O-N 3.2Å
34G54.1Low51.8Low75 Ų75122.8 Ų122.877%0.77372%0.723SS**THydrogen-bonded Turntrans162.5-15.2-175.400000115.8R32R32-G34 VanDerWaalsContact C-N 3.31Å; R32-G34 PolarHBondContact O-N 3.23Å
35T52.8Low51.9Low94 Ų94125.2 Ų125.258%0.57773%0.728SS**SBendtrans-128.3129.5173.946.10000111.5R32 Q37R32-T35 PolarHBondContact O-N 2.07Å; T35-Q37 PolarHBondContact O-N 3.13Å
36P52Low51.9Low126 Ų126126.6 Ų126.682%0.81873%0.729SS**  trans-67.3101.4167.327.3-29.6000107.2R38P36-R38 VanDerWaalsContact C-N 3.28Å; P36-R38 PolarHBondContact O-N 3.04Å
37Q60.1Low52.1Low92 Ų92132 Ų13243%0.4376%0.758SS.*  trans-66.995168.1-88.7-178.1-19.100107.6P31 T35 C39P31-Q37 HydrophobicContact CB-CG 4.49Å; T35-Q37 PolarHBondContact O-N 3.13Å; Q37-C39 VanDerWaalsContact C-N 3.34Å; Q37-C39 PolarHBondContact O-N 2.78Å
38R55.9Low52.3Low225 Ų225134.1 Ų134.185%0.84976%0.764SS**  trans-61.5104.7155.5-88.4179.4158.1168.6-5.6105.7P36 V40P36-R38 VanDerWaalsContact C-N 3.28Å; P36-R38 PolarHBondContact O-N 3.04Å; R38-V40 HydrophobicContact CB-CG2 4.42Å; R38-V40 PolarHBondContact O-N 3.4Å
39C52.9Low52.3Low77 Ų77138.1 Ų138.152%0.5276%0.764SS.*  trans-65.194.3162.9-55.40000104.8C26 Q37 G41C26-C39 WeakPolarHBondContact CB-SG 3.37Å; C26-C39 WeakPolarHBondContact SG-CB 3.43Å; C26-C39 CovalentContact SG-SG 2.07Å; C26-C39 PolarHBondContact SG-SG 2.85Å; Q37-C39 VanDerWaalsContact C-N 3.34Å; Q37-C39 PolarHBondContact O-N 2.78Å; C39-G41 PolarHBondContact O-N 2.88Å; C39-G41 VanDerWaalsContact O-N 3.13Å
40V54.8Low52.2Low127 Ų127133.7 Ų133.777%0.7777%0.765SS**  trans-68.1110.8177.7-178.10000104.9R38 S42R38-V40 HydrophobicContact CB-CG2 4.42Å; R38-V40 PolarHBondContact O-N 3.4Å; V40-S42 PolarHBondContact O-N 3Å
41G51.8Low52.5Low66 Ų66130 Ų13068%0.6876%0.755SS**  trans-53.5114.3170.200000107.5C39 T43C39-G41 PolarHBondContact O-N 2.88Å; C39-G41 VanDerWaalsContact O-N 3.13Å; G41-T43 PolarHBondContact O-N 3.14Å; G41-T43 VanDerWaalsContact O-N 3.14Å
42S44.2Very low52.5Low117 Ų117134.3 Ų134.382%0.81878%0.776SS**  trans-64.2114.7162.9-168.70000105V40V40-S42 PolarHBondContact O-N 3Å
43T44.7Very low52.2Low204 Ų204126.6 Ų126.6100%1.25277%0.771SS**  trans-410155.316.20000111G41G41-T43 PolarHBondContact O-N 3.14Å; G41-T43 VanDerWaalsContact O-N 3.14Å

Retrieved 43 of 43 residues in 21.7 ms (Link to these results)