A0A087X8R5_POEFO Loading...

Cytochrome c oxidase subunit 7C, mitochondrial

Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation. The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiquinol-cytochrome c oxidoreductase (cytochrome b-c1 complex, complex III, CIII) and cytochrome c oxidase (complex IV, CIV), that cooperate to transfer electrons derived from NADH and succinate to molecular oxygen, creating an electrochemical gradient over the inner membrane that drives transmembrane transport and the ATP synthase. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Electrons originating from reduced cytochrome c in the intermembrane space (IMS) are transferred via the dinuclear copper A center (CU(A)) of subunit 2 and heme A of subunit 1 to the active site in subunit 1, a binuclear center (BNC) formed by heme A3 and copper B (CU(B)). The BNC reduces molecular oxygen to 2 water molecules using 4 electrons from cytochrome c in the IMS and 4 protons from the mitochondrial matrix.

AlphaFold DB , UniProt , Accession A0A087X8R5, Species POEFO (Poecilia formosa, Amazon molly), Gene n/a, Length 63 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M70.7Confident86.9Confident199 Ų199118.5 Ų118.598%0.9862%0.616SS**  0-56.10-64.2-63.1175.600112.3G3 Q4 A5M1-G3 PolarHBondContact O-N 3.43Å; M1-Q4 PolarHBondContact O-N 3.3Å; M1-A5 PolarHBondContact O-N 3.49Å
2L85.6Confident86.8Confident142 Ų142114.9 Ų114.974%0.74361%0.608SS**Hα-helixtrans-60-46.8-176.2-162107.7000114.6Q4 A5 V6L2-Q4 VanDerWaalsContact C-N 3.31Å; L2-Q4 PolarHBondContact O-N 3.11Å; L2-A5 WeakPolarHBondContact O-CB 3.34Å; L2-A5 PolarHBondContact O-N 3.37Å; L2-V6 HydrophobicContact CD2-CG2 4.49Å; L2-V6 WeakPolarHBondContact O-CG2 3.26Å; L2-V6 PolarHBondContact O-N 3.19Å
3G87.2Confident86.6Confident54 Ų54110 Ų11056%0.55759%0.594SS**Hα-helixtrans-62.8-33.1-179.700000114.4M1 R7M1-G3 PolarHBondContact O-N 3.43Å; G3-R7 WeakPolarHBondContact O-CB 3.26Å; G3-R7 PolarHBondContact O-N 3.31Å
4Q86.7Confident86.6Confident120 Ų120109.1 Ų109.156%0.56159%0.593SS**Hα-helixtrans-69.8-38.1172.5-80.8-175.5-22.400111.7M1 L2 R7 R8M1-Q4 PolarHBondContact O-N 3.3Å; L2-Q4 VanDerWaalsContact C-N 3.31Å; L2-Q4 PolarHBondContact O-N 3.11Å; Q4-R7 PolarHBondContact O-N 3.47Å; Q4-R8 WeakPolarHBondContact O-CB 3.21Å; Q4-R8 VanDerWaalsContact O-CG 3.24Å; Q4-R8 WeakPolarHBondContact O-CG 3.36Å; Q4-R8 PolarHBondContact O-N 3.46Å
5A89.4Confident86.4Confident58 Ų58114.7 Ų114.748%0.47960%0.602SS.*Hα-helixtrans-65.5-44.2175.900000111.7M1 L2 R7 R8 F9M1-A5 PolarHBondContact O-N 3.49Å; L2-A5 WeakPolarHBondContact O-CB 3.34Å; L2-A5 PolarHBondContact O-N 3.37Å; A5-R7 PolarHBondContact O-N 2.9Å; A5-R8 PolarHBondContact O-N 3.47Å; A5-F9 WeakPolarHBondContact O-CB 3.34Å; A5-F9 PolarHBondContact O-N 3.28Å
6V91.5Very high86Confident86 Ų86110.9 Ų110.952%0.52159%0.589SS.*Hα-helixtrans-60.6-45.9175173.50000111L2 R8 F9 A10L2-V6 HydrophobicContact CD2-CG2 4.49Å; L2-V6 WeakPolarHBondContact O-CG2 3.26Å; L2-V6 PolarHBondContact O-N 3.19Å; V6-R8 PolarHBondContact O-N 2.92Å; V6-F9 PolarHBondContact O-N 2.66Å; V6-A10 WeakPolarHBondContact O-CB 3.09Å; V6-A10 PolarHBondContact O-N 3.17Å
7R89.4Confident85.7Confident190 Ų190110.1 Ų110.172%0.71759%0.594SS**Hα-helixtrans-59.1-48.6176-177.8176.9175.4-178-0.9111.4G3 Q4 A5 F9 A10 T11G3-R7 WeakPolarHBondContact O-CB 3.26Å; G3-R7 PolarHBondContact O-N 3.31Å; Q4-R7 PolarHBondContact O-N 3.47Å; A5-R7 PolarHBondContact O-N 2.9Å; R7-F9 PolarHBondContact O-N 3.38Å; R7-A10 PolarHBondContact O-N 3.34Å; R7-T11 HydrophobicContact CG-CG2 4.41Å; R7-T11 WeakPolarHBondContact O-CB 3.25Å; R7-T11 WeakPolarHBondContact O-CG2 3.29Å; R7-T11 PolarHBondContact O-N 3.35Å; R7-T11 PolarHBondContact O-OG1 2.87Å
8R88.9Confident85.8Confident170 Ų170111.6 Ų111.664%0.64260%0.596SS**Hα-helixtrans-59.7-46.1179.3-75173-179.5-1751.1111.5Q4 A5 V6 T11 S12Q4-R8 WeakPolarHBondContact O-CB 3.21Å; Q4-R8 VanDerWaalsContact O-CG 3.24Å; Q4-R8 WeakPolarHBondContact O-CG 3.36Å; Q4-R8 PolarHBondContact O-N 3.46Å; A5-R8 PolarHBondContact O-N 3.47Å; V6-R8 PolarHBondContact O-N 2.92Å; R8-T11 WeakPolarHBondContact CA-OG1 3.3Å; R8-T11 PolarHBondContact O-N 2.85Å; R8-T11 PolarHBondContact O-OG1 3.12Å; R8-S12 WeakPolarHBondContact O-CB 3.43Å; R8-S12 PolarHBondContact O-N 3.34Å; R8-S12 PolarHBondContact O-OG 3.22Å; R8-S12 VanDerWaalsContact O-OG 3.04Å
9F90.7Very high85.8Confident159 Ų159114 Ų11470%0.69760%0.597SS**Hα-helixtrans-60.4-50.6177.2179.6-97.3000112.1A5 V6 R7 T11 S12 A13A5-F9 WeakPolarHBondContact O-CB 3.34Å; A5-F9 PolarHBondContact O-N 3.28Å; V6-F9 PolarHBondContact O-N 2.66Å; R7-F9 PolarHBondContact O-N 3.38Å; F9-T11 VanDerWaalsContact C-N 3.35Å; F9-T11 PolarHBondContact O-N 2.82Å; F9-S12 PolarHBondContact O-N 3.47Å; F9-A13 PolarHBondContact O-N 3.15Å
10A89.2Confident85.9Confident48 Ų48111.7 Ų111.740%0.39760%0.595SS.*Hα-helixtrans-61.1-42.517900000111.8V6 R7 S12 A13 V14V6-A10 WeakPolarHBondContact O-CB 3.09Å; V6-A10 PolarHBondContact O-N 3.17Å; R7-A10 PolarHBondContact O-N 3.34Å; A10-S12 VanDerWaalsContact C-N 3.35Å; A10-S12 PolarHBondContact O-N 3.37Å; A10-A13 PolarHBondContact O-N 3.32Å; A10-V14 VanDerWaalsContact O-CG2 3.3Å; A10-V14 WeakPolarHBondContact O-CG2 3.45Å; A10-V14 PolarHBondContact O-N 2.97Å
11T86.9Confident85.9Confident78 Ų78112.9 Ų112.948%0.47960%0.597SS.*Hα-helixtrans-65.6-36.7176.950.90000112.9R7 R8 F9 R15R7-T11 HydrophobicContact CG-CG2 4.41Å; R7-T11 WeakPolarHBondContact O-CB 3.25Å; R7-T11 WeakPolarHBondContact O-CG2 3.29Å; R7-T11 PolarHBondContact O-N 3.35Å; R7-T11 PolarHBondContact O-OG1 2.87Å; R8-T11 WeakPolarHBondContact CA-OG1 3.3Å; R8-T11 PolarHBondContact O-N 2.85Å; R8-T11 PolarHBondContact O-OG1 3.12Å; F9-T11 VanDerWaalsContact C-N 3.35Å; F9-T11 PolarHBondContact O-N 2.82Å; T11-R15 WeakPolarHBondContact O-CB 3.44Å; T11-R15 PolarHBondContact O-N 2.94Å
12S84.8Confident86.9Confident75 Ų75105.4 Ų105.452%0.52457%0.572SS.*Hα-helixtrans-67.4-42.8176.2-65.20000111.5R8 F9 A10 R15 S16R8-S12 WeakPolarHBondContact O-CB 3.43Å; R8-S12 PolarHBondContact O-N 3.34Å; R8-S12 PolarHBondContact O-OG 3.22Å; R8-S12 VanDerWaalsContact O-OG 3.04Å; F9-S12 PolarHBondContact O-N 3.47Å; A10-S12 VanDerWaalsContact C-N 3.35Å; A10-S12 PolarHBondContact O-N 3.37Å; S12-R15 PolarHBondContact O-N 2.88Å; S12-S16 WeakPolarHBondContact O-CB 3.28Å; S12-S16 PolarHBondContact O-N 3.28Å
13A85.2Confident87.3Confident51 Ų51105.1 Ų105.142%0.42158%0.578SS.*Hα-helixtrans-62.2-43.1176.700000112.1F9 A10 R15 S16 S17F9-A13 PolarHBondContact O-N 3.15Å; A10-A13 PolarHBondContact O-N 3.32Å; A13-R15 VanDerWaalsContact C-N 3.35Å; A13-R15 PolarHBondContact O-N 3.16Å; A13-S16 PolarHBondContact O-N 2.9Å; A13-S17 PolarHBondContact O-N 2.97Å; A13-S17 PolarHBondContact O-OG 3.26Å
14V86.3Confident87.7Confident97 Ų97103.3 Ų103.359%0.58856%0.56SS**Hα-helixtrans-65.4-36.9176.1171.80000112A10 S17 H18A10-V14 VanDerWaalsContact O-CG2 3.3Å; A10-V14 WeakPolarHBondContact O-CG2 3.45Å; A10-V14 PolarHBondContact O-N 2.97Å; V14-S17 PolarHBondContact O-OG 2.88Å; V14-H18 WeakPolarHBondContact O-CB 3.45Å; V14-H18 PolarHBondContact O-N 3.32Å
15R82.8Confident88Confident193 Ų193102.4 Ų102.473%0.72855%0.554SS**Hα-helixtrans-69.2-42.5178-177179.5173.6122.8-0.1112T11 S12 A13 H18T11-R15 WeakPolarHBondContact O-CB 3.44Å; T11-R15 PolarHBondContact O-N 2.94Å; S12-R15 PolarHBondContact O-N 2.88Å; A13-R15 VanDerWaalsContact C-N 3.35Å; A13-R15 PolarHBondContact O-N 3.16Å; R15-H18 PolarHBondContact O-N 3.44Å
16S80.8Confident88.2Confident55 Ų55105.8 Ų105.839%0.38556%0.564SS.*Hα-helixtrans-65.9-38.2177.6175.50000111.7S12 A13 H18 Y19 E21S12-S16 WeakPolarHBondContact O-CB 3.28Å; S12-S16 PolarHBondContact O-N 3.28Å; A13-S16 PolarHBondContact O-N 2.9Å; S16-H18 VanDerWaalsContact C-N 3.32Å; S16-H18 PolarHBondContact O-N 3.48Å; S16-Y19 VanDerWaalsContact O-O 3.07Å; S16-E21 WeakPolarHBondContact CA-OE1 3.3Å; S16-E21 VanDerWaalsContact CB-OE1 3.31Å; S16-E21 WeakPolarHBondContact CB-OE1 3.38Å; S16-E21 PolarHBondContact OG-OE1 3.21Å
17S81.3Confident88.3Confident96 Ų96105.1 Ų105.167%0.67156%0.557SS**Hα-helixtrans-71.3-24.6178.166.50000114.3A13 V14A13-S17 PolarHBondContact O-N 2.97Å; A13-S17 PolarHBondContact O-OG 3.26Å; V14-S17 PolarHBondContact O-OG 2.88Å
18H87.2Confident88.6Confident138 Ų138102.2 Ų102.264%0.63956%0.563SS**Hα-helixtrans-78.6-28.1-175.7-169.7-77.8000113.5V14 R15 S16V14-H18 WeakPolarHBondContact O-CB 3.45Å; V14-H18 PolarHBondContact O-N 3.32Å; R15-H18 PolarHBondContact O-N 3.44Å; S16-H18 VanDerWaalsContact C-N 3.32Å; S16-H18 PolarHBondContact O-N 3.48Å
19Y86.1Confident89Confident157 Ų15797.7 Ų97.762%0.61655%0.548SS*.SBendtrans-112.7129.7179.6-67.3-77.1000109.9S16 E21S16-Y19 VanDerWaalsContact O-O 3.07Å; Y19-E21 PolarHBondContact O-N 2.89Å; Y19-E21 VanDerWaalsContact O-N 3.12Å
20A86.8Confident89.2Confident67 Ų6791.5 Ų91.555%0.55452%0.524SS*.  trans-62.3119.3175.300000109.4K25A20-K25 HydrophobicContact CB-CB 3.7Å; A20-K25 HydrophobicContact CB-CD 4.29Å; A20-K25 HydrophobicContact CB-CG 4.02Å; A20-K25 VanDerWaalsContact O-CB 3.29Å; A20-K25 WeakPolarHBondContact O-CB 3.33Å
21E87.3Confident89.6Confident137 Ų13791.6 Ų91.664%0.6452%0.52SS*.  trans-91.6160.1176.7-63.5-175.2-173.100110.8S16 Y19S16-E21 WeakPolarHBondContact CA-OE1 3.3Å; S16-E21 VanDerWaalsContact CB-OE1 3.31Å; S16-E21 WeakPolarHBondContact CB-OE1 3.38Å; S16-E21 PolarHBondContact OG-OE1 3.21Å; Y19-E21 PolarHBondContact O-N 2.89Å; Y19-E21 VanDerWaalsContact O-N 3.12Å
22G90.2Very high90.1Very high43 Ų4393.4 Ų93.444%0.44353%0.527SS..SBendtrans101.7171.9176.800000115.2G24 K25G22-G24 PolarHBondContact O-N 3.43Å; G22-K25 PolarHBondContact O-N 2.9Å
23P95.2Very high90.7Very high135 Ų13593.8 Ų93.888%0.87752%0.523SS*.THydrogen-bonded Turntrans-56.5131.5-175.6-25.835.3000112.6K25P23-K25 PolarHBondContact O-N 2.89Å
24G94.3Very high91.3Very high17 Ų1798.7 Ų98.718%0.17554%0.535CS..THydrogen-bonded Turntrans79.1-7.9177.500000115.5G22G22-G24 PolarHBondContact O-N 3.43Å
25K93.8Very high91.9Very high101 Ų101102.6 Ų102.644%0.43954%0.539SS..THydrogen-bonded Turntrans-93.5-14.3176.6-60.3-53.6-173.9-167.30113.6A20 G22 P23 L27 D32A20-K25 HydrophobicContact CB-CB 3.7Å; A20-K25 HydrophobicContact CB-CD 4.29Å; A20-K25 HydrophobicContact CB-CG 4.02Å; A20-K25 VanDerWaalsContact O-CB 3.29Å; A20-K25 WeakPolarHBondContact O-CB 3.33Å; G22-K25 PolarHBondContact O-N 2.9Å; P23-K25 PolarHBondContact O-N 2.89Å; K25-L27 VanDerWaalsContact C-N 3.31Å; K25-D32 IonicContact NZ-OD1 2.91Å; K25-D32 PolarHBondContact NZ-OD1 3.41Å; K25-D32 IonicContact NZ-OD2 3.72Å
26N93Very high92.6Very high128 Ų128100 Ų10068%0.68453%0.529SS*.SBendtrans-89.39.2173.367.6-22.3000113.8
27L95.1Very high93.5Very high73 Ų7399.5 Ų99.538%0.38252%0.522SS..SBendtrans-101.4146.2-179.8-62.5175.7000110.6K25 F29 V31K25-L27 VanDerWaalsContact C-N 3.31Å; L27-F29 HydrophobicContact CB-CE1 4.49Å; L27-F29 HydrophobicContact CB-CZ 4.44Å; L27-F29 HydrophobicContact CD1-CE2 4.03Å; L27-F29 HydrophobicContact CD1-CZ 4.12Å; L27-F29 PolarHBondContact O-N 3.23Å; L27-F29 VanDerWaalsContact O-N 3.11Å; L27-V31 HydrophobicContact CD1-CG1 3.75Å
28P95Very high94.3Very high128 Ų12899.4 Ų99.483%0.83151%0.513SS*.SBendtrans-76.911.4177.332.1-34.4000113.5
29F96.4Very high94.8Very high75 Ų7594.4 Ų94.433%0.32950%0.499SS..SBendtrans-144.7151.1176.653.5-92.6000110L27 V31 L37 M40 M41L27-F29 HydrophobicContact CB-CE1 4.49Å; L27-F29 HydrophobicContact CB-CZ 4.44Å; L27-F29 HydrophobicContact CD1-CE2 4.03Å; L27-F29 HydrophobicContact CD1-CZ 4.12Å; L27-F29 PolarHBondContact O-N 3.23Å; L27-F29 VanDerWaalsContact O-N 3.11Å; F29-V31 HydrophobicContact CD2-CG1 4.2Å; F29-V31 HydrophobicContact CE2-CG1 3.98Å; F29-L37 HydrophobicContact CD2-CD1 3.83Å; F29-L37 HydrophobicContact CE2-CD1 3.71Å; F29-M40 HydrophobicContact CB-SD 4.46Å; F29-M41 HydrophobicContact CE2-CE 4.24Å; F29-M41 HydrophobicContact CZ-CE 4.28Å
30S95.9Very high95.4Very high30 Ų3090.1 Ų90.121%0.2149%0.485CS..  trans-75.9136.7-179.9170.40000111.2D32S30-D32 PolarHBondContact OG-N 2.98Å; S30-D32 PolarHBondContact OG-OD2 2.9Å
31V97.4Very high96Very high49 Ų4989.5 Ų89.530%0.29747%0.472SS..  trans-108.86172.1-62.50000112.5L27 F29 N33 L37L27-V31 HydrophobicContact CD1-CG1 3.75Å; F29-V31 HydrophobicContact CD2-CG1 4.2Å; F29-V31 HydrophobicContact CE2-CG1 3.98Å; V31-N33 VanDerWaalsContact C-N 3.27Å; V31-N33 PolarHBondContact O-N 3.4Å; V31-L37 HydrophobicContact CB-CD2 4.19Å; V31-L37 HydrophobicContact CG1-CD1 4.12Å; V31-L37 HydrophobicContact CG1-CD2 4Å
32D96.9Very high96.5Very high117 Ų11787.3 Ų87.363%0.62647%0.468SS*.SBendtrans-68-27.5-171.8-52.7-57.8000112.2K25 S30K25-D32 IonicContact NZ-OD1 2.91Å; K25-D32 PolarHBondContact NZ-OD1 3.41Å; K25-D32 IonicContact NZ-OD2 3.72Å; S30-D32 PolarHBondContact OG-N 2.98Å; S30-D32 PolarHBondContact OG-OD2 2.9Å
33N98Very high96.9Very high82 Ų8291.4 Ų91.444%0.43948%0.479SS..  trans-119.9114.3174.9-178.1-26.1000110.9V31 W35 R36 L37V31-N33 VanDerWaalsContact C-N 3.27Å; V31-N33 PolarHBondContact O-N 3.4Å; N33-W35 VanDerWaalsContact C-N 3.29Å; N33-W35 PolarHBondContact O-N 3.43Å; N33-W35 WeakPolarHBondContact OD1-CB 3.46Å; N33-W35 PolarHBondContact OD1-N 3.47Å; N33-R36 HydrophobicContact CB-CB 4.06Å; N33-R36 PolarHBondContact O-N 3.08Å; N33-R36 PolarHBondContact OD1-N 2.96Å; N33-L37 WeakPolarHBondContact O-CB 3.37Å; N33-L37 PolarHBondContact O-N 2.71Å
34K97.8Very high97.1Very high155 Ų15591.8 Ų91.867%0.67447%0.467SS*.Hα-helixtrans-57.8-34.8-179.165.4-175.6174.9-174.70114.5L38K34-L38 VanDerWaalsContact O-CB 3.32Å; K34-L38 WeakPolarHBondContact O-CB 3.31Å; K34-L38 PolarHBondContact O-N 3.39Å
35W98.6Very high97.3Very high179 Ų17997.2 Ų97.268%0.67849%0.486SS*.Hα-helixtrans-74.5-38.7179.9-63.8114.8000111.9N33 L38 G39N33-W35 VanDerWaalsContact C-N 3.29Å; N33-W35 PolarHBondContact O-N 3.43Å; N33-W35 WeakPolarHBondContact OD1-CB 3.46Å; N33-W35 PolarHBondContact OD1-N 3.47Å; W35-L38 HydrophobicContact CE3-CD2 4.07Å; W35-L38 HydrophobicContact CZ3-CD2 4.14Å; W35-L38 PolarHBondContact O-N 2.78Å; W35-G39 PolarHBondContact O-N 3.47Å
36R98.2Very high97.5Very high139 Ų13993.7 Ų93.753%0.52548%0.478SS..Hα-helixtrans-65.2-44172.6-176-178.7174.4-160.50.5110.8N33 G39 M40N33-R36 HydrophobicContact CB-CB 4.06Å; N33-R36 PolarHBondContact O-N 3.08Å; N33-R36 PolarHBondContact OD1-N 2.96Å; R36-G39 PolarHBondContact O-N 3.2Å; R36-M40 HydrophobicContact CG-CE 4.46Å; R36-M40 HydrophobicContact CG-SD 4.43Å; R36-M40 WeakPolarHBondContact O-CG 3.33Å; R36-M40 PolarHBondContact O-N 2.92Å
37L98.5Very high97.8Very high44 Ų4490.9 Ų90.923%0.2347%0.468CS..Hα-helixtrans-59.8-47.8176.1178.761.1000111F29 V31 N33 G39 M40 M41F29-L37 HydrophobicContact CD2-CD1 3.83Å; F29-L37 HydrophobicContact CE2-CD1 3.71Å; V31-L37 HydrophobicContact CB-CD2 4.19Å; V31-L37 HydrophobicContact CG1-CD1 4.12Å; V31-L37 HydrophobicContact CG1-CD2 4Å; N33-L37 WeakPolarHBondContact O-CB 3.37Å; N33-L37 PolarHBondContact O-N 2.71Å; L37-G39 VanDerWaalsContact C-N 3.35Å; L37-G39 PolarHBondContact O-N 2.9Å; L37-M40 PolarHBondContact O-N 3.35Å; L37-M41 HydrophobicContact CD1-CE 4.31Å; L37-M41 HydrophobicContact CD1-CG 4.18Å; L37-M41 HydrophobicContact CG-CG 4.44Å; L37-M41 VanDerWaalsContact O-CG 3.31Å; L37-M41 WeakPolarHBondContact O-CG 3.32Å; L37-M41 PolarHBondContact O-N 3.02Å
38L98.7Very high97.9Very high93 Ų9389.7 Ų89.749%0.48747%0.474SS..Hα-helixtrans-56.3-49.6175.9177.864.8000111.2K34 W35 M40 M41 V42K34-L38 VanDerWaalsContact O-CB 3.32Å; K34-L38 WeakPolarHBondContact O-CB 3.31Å; K34-L38 PolarHBondContact O-N 3.39Å; W35-L38 HydrophobicContact CE3-CD2 4.07Å; W35-L38 HydrophobicContact CZ3-CD2 4.14Å; W35-L38 PolarHBondContact O-N 2.78Å; L38-M40 VanDerWaalsContact C-N 3.34Å; L38-M40 PolarHBondContact O-N 3.3Å; L38-M41 PolarHBondContact O-N 2.76Å; L38-V42 HydrophobicContact CD1-CG2 4.19Å; L38-V42 HydrophobicContact CG-CG2 4.48Å; L38-V42 WeakPolarHBondContact O-CG2 3.28Å; L38-V42 PolarHBondContact O-N 3.25Å
39G98.7Very high98.1Very high33 Ų3390.6 Ų90.634%0.3447%0.465SS..Hα-helixtrans-57.3-45.217700000112.6W35 R36 L37 V42 L43W35-G39 PolarHBondContact O-N 3.47Å; R36-G39 PolarHBondContact O-N 3.2Å; L37-G39 VanDerWaalsContact C-N 3.35Å; L37-G39 PolarHBondContact O-N 2.9Å; G39-V42 PolarHBondContact O-N 3.26Å; G39-L43 WeakPolarHBondContact O-CG 3.24Å; G39-L43 PolarHBondContact O-N 2.91Å
40M98.4Very high98.2Very high67 Ų6790 Ų9033%0.3347%0.467SS..Hα-helixtrans-62-43176.2-77.6179.3163.800112.6F29 R36 L37 L38 L43 F44F29-M40 HydrophobicContact CB-SD 4.46Å; R36-M40 HydrophobicContact CG-CE 4.46Å; R36-M40 HydrophobicContact CG-SD 4.43Å; R36-M40 WeakPolarHBondContact O-CG 3.33Å; R36-M40 PolarHBondContact O-N 2.92Å; L37-M40 PolarHBondContact O-N 3.35Å; L38-M40 VanDerWaalsContact C-N 3.34Å; L38-M40 PolarHBondContact O-N 3.3Å; M40-L43 PolarHBondContact O-N 3.11Å; M40-F44 VanDerWaalsContact O-CB 3.3Å; M40-F44 WeakPolarHBondContact O-CB 3.12Å; M40-F44 PolarHBondContact O-N 3.02Å
41M98.6Very high98.3Very high55 Ų5595.1 Ų95.127%0.27149%0.486SS..Hα-helixtrans-65.8-43.4178-67.2-62.396.200111.8F29 L37 L38 L43 F44 F45F29-M41 HydrophobicContact CE2-CE 4.24Å; F29-M41 HydrophobicContact CZ-CE 4.28Å; L37-M41 HydrophobicContact CD1-CE 4.31Å; L37-M41 HydrophobicContact CD1-CG 4.18Å; L37-M41 HydrophobicContact CG-CG 4.44Å; L37-M41 VanDerWaalsContact O-CG 3.31Å; L37-M41 WeakPolarHBondContact O-CG 3.32Å; L37-M41 PolarHBondContact O-N 3.02Å; L38-M41 PolarHBondContact O-N 2.76Å; M41-L43 VanDerWaalsContact C-N 3.34Å; M41-L43 PolarHBondContact O-N 3.37Å; M41-F44 PolarHBondContact O-N 3.4Å; M41-F45 HydrophobicContact CB-CD2 4.27Å; M41-F45 HydrophobicContact CB-CE2 4.47Å; M41-F45 WeakPolarHBondContact O-CB 3.1Å; M41-F45 VanDerWaalsContact O-CD2 3.28Å; M41-F45 WeakPolarHBondContact O-CD2 3.46Å; M41-F45 PolarHBondContact O-N 2.91Å; M41-F45 HydrophobicContact SD-CD2 4.34Å; M41-F45 HydrophobicContact SD-CE2 3.66Å
42V98.6Very high98.4Very high91 Ų9196.1 Ų96.155%0.55249%0.494SS*.Hα-helixtrans-61.4-43.5176.2170.80000110.9L38 G39 G46L38-V42 HydrophobicContact CD1-CG2 4.19Å; L38-V42 HydrophobicContact CG-CG2 4.48Å; L38-V42 WeakPolarHBondContact O-CG2 3.28Å; L38-V42 PolarHBondContact O-N 3.25Å; G39-V42 PolarHBondContact O-N 3.26Å; V42-G46 WeakPolarHBondContact O-CA 3.3Å; V42-G46 PolarHBondContact O-N 3.2Å
43L98.5Very high98.4Very high129 Ų12996.7 Ų96.768%0.67549%0.491SS*.Hα-helixtrans-67.4-45.2177.7-70.5174.6000112.1G39 M40 M41 S47G39-L43 WeakPolarHBondContact O-CG 3.24Å; G39-L43 PolarHBondContact O-N 2.91Å; M40-L43 PolarHBondContact O-N 3.11Å; M41-L43 VanDerWaalsContact C-N 3.34Å; M41-L43 PolarHBondContact O-N 3.37Å; L43-S47 WeakPolarHBondContact O-CB 3.47Å; L43-S47 PolarHBondContact O-N 2.63Å; L43-S47 PolarHBondContact O-OG 3.12Å
44F98.3Very high98.4Very high143 Ų14397.9 Ų97.963%0.62750%0.496SS*.Hα-helixtrans-64.7-55.8-178.5-178.9-105.7000111.8M40 M41 S47 G48M40-F44 VanDerWaalsContact O-CB 3.3Å; M40-F44 WeakPolarHBondContact O-CB 3.12Å; M40-F44 PolarHBondContact O-N 3.02Å; M41-F44 PolarHBondContact O-N 3.4Å; F44-S47 PolarHBondContact O-OG 3.44Å; F44-G48 PolarHBondContact O-N 3.28Å
45F98.6Very high98.5Very high131 Ų13193.1 Ų93.158%0.57548%0.48SS*.Hα-helixtrans-74.6-40-179.5-66.6-65.1000112.3M41 S47 G48 F49M41-F45 HydrophobicContact CB-CD2 4.27Å; M41-F45 HydrophobicContact CB-CE2 4.47Å; M41-F45 WeakPolarHBondContact O-CB 3.1Å; M41-F45 VanDerWaalsContact O-CD2 3.28Å; M41-F45 WeakPolarHBondContact O-CD2 3.46Å; M41-F45 PolarHBondContact O-N 2.91Å; M41-F45 HydrophobicContact SD-CD2 4.34Å; M41-F45 HydrophobicContact SD-CE2 3.66Å; F45-S47 PolarHBondContact O-N 3.32Å; F45-G48 PolarHBondContact O-N 3.47Å; F45-F49 VanDerWaalsContact O-CB 3.28Å; F45-F49 WeakPolarHBondContact O-CB 3.5Å; F45-F49 PolarHBondContact O-N 2.98Å
46G98.6Very high98.5Very high26 Ų2688.7 Ų88.727%0.26847%0.472SS..Hα-helixtrans-63.4-39.6179.200000112.2V42 F49 T50V42-G46 WeakPolarHBondContact O-CA 3.3Å; V42-G46 PolarHBondContact O-N 3.2Å; G46-F49 PolarHBondContact O-N 3.02Å; G46-T50 VanDerWaalsContact O-CB 3.29Å; G46-T50 WeakPolarHBondContact O-CB 3.48Å; G46-T50 VanDerWaalsContact O-CG2 3.25Å; G46-T50 WeakPolarHBondContact O-CG2 3.46Å; G46-T50 PolarHBondContact O-N 3.5Å; G46-T50 PolarHBondContact O-OG1 3.27Å
47S98.4Very high98.5Very high69 Ų6989.9 Ų89.948%0.48348%0.477SS..Hα-helixtrans-64.4-48.3174.461.90000111.8L43 F44 F45 F49 T50 F51L43-S47 WeakPolarHBondContact O-CB 3.47Å; L43-S47 PolarHBondContact O-N 2.63Å; L43-S47 PolarHBondContact O-OG 3.12Å; F44-S47 PolarHBondContact O-OG 3.44Å; F45-S47 PolarHBondContact O-N 3.32Å; S47-F49 VanDerWaalsContact C-N 3.31Å; S47-F49 PolarHBondContact O-N 3.01Å; S47-T50 PolarHBondContact O-N 3.01Å; S47-T50 PolarHBondContact O-OG1 3.38Å; S47-F51 VanDerWaalsContact O-CB 3.24Å; S47-F51 WeakPolarHBondContact O-CB 3.29Å; S47-F51 PolarHBondContact O-N 2.96Å
48G98.3Very high98.4Very high49 Ų4992.5 Ų92.551%0.50549%0.488SS..Hα-helixtrans-59.3-40.4176.400000113.2F44 F45 P52F44-G48 PolarHBondContact O-N 3.28Å; F45-G48 PolarHBondContact O-N 3.47Å; G48-P52 VanDerWaalsContact O-CD 3.3Å; G48-P52 WeakPolarHBondContact O-CD 3.31Å
49F98.5Very high98.4Very high146 Ų14693.3 Ų93.364%0.6449%0.489SS*.Hα-helixtrans-71.1-41.7178.3-179.7-103.4000112.8F45 G46 S47 P52 F53F45-F49 VanDerWaalsContact O-CB 3.28Å; F45-F49 WeakPolarHBondContact O-CB 3.5Å; F45-F49 PolarHBondContact O-N 2.98Å; G46-F49 PolarHBondContact O-N 3.02Å; S47-F49 VanDerWaalsContact C-N 3.31Å; S47-F49 PolarHBondContact O-N 3.01Å; F49-P52 WeakPolarHBondContact O-CD 3.49Å; F49-F53 HydrophobicContact CD1-CE2 4.43Å; F49-F53 HydrophobicContact CE1-CE2 4.03Å; F49-F53 HydrophobicContact CE2-CE2 4.22Å; F49-F53 AromaticContact CZ-CE2 3.92Å; F49-F53 HydrophobicContact CZ-CE2 3.92Å; F49-F53 HydrophobicContact CZ-CZ 4.21Å; F49-F53 WeakPolarHBondContact O-CD2 3.47Å; F49-F53 VanDerWaalsContact O-CE2 3.26Å; F49-F53 WeakPolarHBondContact O-CE2 3.48Å
50T98.6Very high98.4Very high63 Ų6398.4 Ų98.439%0.38751%0.508SS..Hα-helixtrans-78-26-177.5530000113.2G46 S47 F53 I54G46-T50 VanDerWaalsContact O-CB 3.29Å; G46-T50 WeakPolarHBondContact O-CB 3.48Å; G46-T50 VanDerWaalsContact O-CG2 3.25Å; G46-T50 WeakPolarHBondContact O-CG2 3.46Å; G46-T50 PolarHBondContact O-N 3.5Å; G46-T50 PolarHBondContact O-OG1 3.27Å; S47-T50 PolarHBondContact O-N 3.01Å; S47-T50 PolarHBondContact O-OG1 3.38Å; T50-F53 PolarHBondContact O-N 3.21Å; T50-F53 VanDerWaalsContact O-N 3.16Å; T50-I54 PolarHBondContact O-N 3.04Å; T50-I54 VanDerWaalsContact O-N 3.15Å
51F98.4Very high98.3Very high137 Ų137100.4 Ų100.460%0.60152%0.519SS*.Hα-helixtrans-54.8-48.4-174.5-178.9-98.1000114.2S47 F53 I54 V55S47-F51 VanDerWaalsContact O-CB 3.24Å; S47-F51 WeakPolarHBondContact O-CB 3.29Å; S47-F51 PolarHBondContact O-N 2.96Å; F51-F53 VanDerWaalsContact C-N 3.32Å; F51-F53 PolarHBondContact O-N 2.96Å; F51-I54 PolarHBondContact O-N 2.84Å; F51-V55 HydrophobicContact CD1-CG2 4.14Å; F51-V55 HydrophobicContact CE1-CG2 3.76Å; F51-V55 HydrophobicContact CE2-CG2 4.16Å; F51-V55 HydrophobicContact CG-CG2 4.5Å; F51-V55 HydrophobicContact CZ-CG2 3.77Å; F51-V55 WeakPolarHBondContact O-CG2 3.41Å; F51-V55 PolarHBondContact O-N 3.47Å
52P98.4Very high98.1Very high70 Ų70103.2 Ų103.246%0.45553%0.53SS..Hα-helixtrans-58.8-39.9178-2535.2000113.4G48 F49 V55 V56G48-P52 VanDerWaalsContact O-CD 3.3Å; G48-P52 WeakPolarHBondContact O-CD 3.31Å; F49-P52 WeakPolarHBondContact O-CD 3.49Å; P52-V55 PolarHBondContact O-N 3.43Å; P52-V56 WeakPolarHBondContact O-CG2 3.3Å; P52-V56 PolarHBondContact O-N 3.4Å
53F98.4Very high96.9Very high130 Ų130112 Ų11257%0.5756%0.561SS**Hα-helixtrans-66.4-40.1179.4-60.8-84.9000111.9F49 T50 F51 V55 V56 R57F49-F53 HydrophobicContact CD1-CE2 4.43Å; F49-F53 HydrophobicContact CE1-CE2 4.03Å; F49-F53 HydrophobicContact CE2-CE2 4.22Å; F49-F53 AromaticContact CZ-CE2 3.92Å; F49-F53 HydrophobicContact CZ-CE2 3.92Å; F49-F53 HydrophobicContact CZ-CZ 4.21Å; F49-F53 WeakPolarHBondContact O-CD2 3.47Å; F49-F53 VanDerWaalsContact O-CE2 3.26Å; F49-F53 WeakPolarHBondContact O-CE2 3.48Å; T50-F53 PolarHBondContact O-N 3.21Å; T50-F53 VanDerWaalsContact O-N 3.16Å; F51-F53 VanDerWaalsContact C-N 3.32Å; F51-F53 PolarHBondContact O-N 2.96Å; F53-V55 VanDerWaalsContact C-N 3.34Å; F53-V56 PolarHBondContact O-N 3.42Å; F53-R57 WeakPolarHBondContact O-CB 3.39Å; F53-R57 PolarHBondContact O-N 3.49Å
54I98.4Very high96.8Very high107 Ų107111.2 Ų111.255%0.54956%0.555SS.*Hα-helixtrans-63.9-43.4175.1-65.1171.5000110T50 F51 R57 H58T50-I54 PolarHBondContact O-N 3.04Å; T50-I54 VanDerWaalsContact O-N 3.15Å; F51-I54 PolarHBondContact O-N 2.84Å; I54-R57 PolarHBondContact O-N 2.94Å; I54-H58 VanDerWaalsContact O-CB 3.3Å; I54-H58 WeakPolarHBondContact O-CB 3.37Å; I54-H58 PolarHBondContact O-N 2.91Å
55V98.4Very high96.7Very high55 Ų55109.5 Ų109.533%0.33355%0.551SS.*Hα-helixtrans-62.4-47.6177.3171.90000111F51 P52 F53 R57 H58 Q59F51-V55 HydrophobicContact CD1-CG2 4.14Å; F51-V55 HydrophobicContact CE1-CG2 3.76Å; F51-V55 HydrophobicContact CE2-CG2 4.16Å; F51-V55 HydrophobicContact CG-CG2 4.5Å; F51-V55 HydrophobicContact CZ-CG2 3.77Å; F51-V55 WeakPolarHBondContact O-CG2 3.41Å; F51-V55 PolarHBondContact O-N 3.47Å; P52-V55 PolarHBondContact O-N 3.43Å; F53-V55 VanDerWaalsContact C-N 3.34Å; V55-R57 PolarHBondContact O-N 3.39Å; V55-H58 WeakPolarHBondContact O-CB 3.34Å; V55-H58 PolarHBondContact O-N 3.29Å; V55-H58 VanDerWaalsContact O-N 3.17Å; V55-Q59 HydrophobicContact CG1-CG 4.49Å; V55-Q59 WeakPolarHBondContact O-CG 3.37Å; V55-Q59 PolarHBondContact O-N 3Å
56V98.5Very high96.6Very high85 Ų85108.3 Ų108.352%0.51555%0.55SS.*Hα-helixtrans-57.9-49.5176.1169.20000110.5P52 F53 H58 Q59 L60P52-V56 WeakPolarHBondContact O-CG2 3.3Å; P52-V56 PolarHBondContact O-N 3.4Å; F53-V56 PolarHBondContact O-N 3.42Å; V56-H58 VanDerWaalsContact C-N 3.28Å; V56-H58 PolarHBondContact O-N 2.94Å; V56-Q59 PolarHBondContact O-N 2.93Å; V56-Q59 VanDerWaalsContact O-N 3.12Å; V56-L60 HydrophobicContact CG1-CD1 3.95Å; V56-L60 HydrophobicContact CG1-CG 4.34Å; V56-L60 WeakPolarHBondContact O-CG 3.44Å; V56-L60 PolarHBondContact O-N 3.49Å
57R98.1Very high96.5Very high165 Ų165113.2 Ų113.262%0.62357%0.567SS**Hα-helixtrans-57.2-43.4176.3-177.9-179.4-179.4-81.3-2111.6F53 I54 V55 Q59 L60 L61F53-R57 WeakPolarHBondContact O-CB 3.39Å; F53-R57 PolarHBondContact O-N 3.49Å; I54-R57 PolarHBondContact O-N 2.94Å; V55-R57 PolarHBondContact O-N 3.39Å; R57-Q59 VanDerWaalsContact C-N 3.34Å; R57-Q59 PolarHBondContact O-N 2.91Å; R57-L60 PolarHBondContact O-N 3.49Å; R57-L61 HydrophobicContact CG-CD1 3.94Å; R57-L61 VanDerWaalsContact O-CG 3.26Å; R57-L61 WeakPolarHBondContact O-CG 3.24Å; R57-L61 PolarHBondContact O-N 2.91Å; R57-L61 VanDerWaalsContact O-N 3.11Å
58H98.1Very high96.4Very high99 Ų99115.9 Ų115.946%0.45857%0.572SS.*Hα-helixtrans-62.2-41177.8174.574.8000111.9I54 V55 V56 L61 K62I54-H58 VanDerWaalsContact O-CB 3.3Å; I54-H58 WeakPolarHBondContact O-CB 3.37Å; I54-H58 PolarHBondContact O-N 2.91Å; V55-H58 WeakPolarHBondContact O-CB 3.34Å; V55-H58 PolarHBondContact O-N 3.29Å; V55-H58 VanDerWaalsContact O-N 3.17Å; V56-H58 VanDerWaalsContact C-N 3.28Å; V56-H58 PolarHBondContact O-N 2.94Å; H58-L61 PolarHBondContact O-N 3.24Å; H58-K62 WeakPolarHBondContact NE2-CE 3.42Å; H58-K62 PolarHBondContact NE2-NZ 3.49Å; H58-K62 WeakPolarHBondContact O-CG 3.44Å; H58-K62 PolarHBondContact O-N 3.37Å
59Q98.3Very high96.2Very high109 Ų109120.4 Ų120.451%0.50958%0.576SS.*Hα-helixtrans-67-41.4175.7-64-65.1-0.300112.5V55 V56 R57 L61 K62V55-Q59 HydrophobicContact CG1-CG 4.49Å; V55-Q59 WeakPolarHBondContact O-CG 3.37Å; V55-Q59 PolarHBondContact O-N 3Å; V56-Q59 PolarHBondContact O-N 2.93Å; V56-Q59 VanDerWaalsContact O-N 3.12Å; R57-Q59 VanDerWaalsContact C-N 3.34Å; R57-Q59 PolarHBondContact O-N 2.91Å; Q59-L61 PolarHBondContact O-N 3.06Å; Q59-K62 WeakPolarHBondContact O-CB 3.41Å; Q59-K62 PolarHBondContact O-N 3.48Å; Q59-K62 VanDerWaalsContact OE1-CD 3.23Å
60L97.8Very high96.1Very high140 Ų140118.6 Ų118.673%0.73357%0.572SS**Hα-helixtrans-64.6-27.5177.5-68.4173.6000113.2V56 R57V56-L60 HydrophobicContact CG1-CD1 3.95Å; V56-L60 HydrophobicContact CG1-CG 4.34Å; V56-L60 WeakPolarHBondContact O-CG 3.44Å; V56-L60 PolarHBondContact O-N 3.49Å; R57-L60 PolarHBondContact O-N 3.49Å
61L97.5Very high95.9Very high110 Ų110122.8 Ų122.858%0.57659%0.586SS**THydrogen-bonded Turntrans-89.2-6.1179.2-67.1174.8000113.5R57 H58 Q59 K63R57-L61 HydrophobicContact CG-CD1 3.94Å; R57-L61 VanDerWaalsContact O-CG 3.26Å; R57-L61 WeakPolarHBondContact O-CG 3.24Å; R57-L61 PolarHBondContact O-N 2.91Å; R57-L61 VanDerWaalsContact O-N 3.11Å; H58-L61 PolarHBondContact O-N 3.24Å; Q59-L61 PolarHBondContact O-N 3.06Å; L61-K63 PolarHBondContact O-N 3.32Å
62K93.5Very high95.7Very high113 Ų113121.7 Ų121.749%0.49159%0.585SS.*  trans-75121.9169.8-77.2164.5147.6169.90108.2H58 Q59H58-K62 WeakPolarHBondContact NE2-CE 3.42Å; H58-K62 PolarHBondContact NE2-NZ 3.49Å; H58-K62 WeakPolarHBondContact O-CG 3.44Å; H58-K62 PolarHBondContact O-N 3.37Å; Q59-K62 WeakPolarHBondContact O-CB 3.41Å; Q59-K62 PolarHBondContact O-N 3.48Å; Q59-K62 VanDerWaalsContact OE1-CD 3.23Å
63K72.7Confident95.4Very high277 Ų277126.4 Ų126.4100%1.20460%0.597SS**  trans-85.40166.1-71.3-171.5178.6-173.80109.8L61L61-K63 PolarHBondContact O-N 3.32Å

Retrieved 63 of 63 residues in 95.7 ms (Link to these results)