A0A087XY55_POEFO Loading...

Progonadoliberin

Stimulates the secretion of gonadotropins.

AlphaFold DB , UniProt , Accession A0A087XY55, Species POEFO (Poecilia formosa, Amazon molly), Gene n/a, Length 86 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1V60.5Low86.9Confident133 Ų133105 Ų10581%0.80656%0.563SS**  01090-173.60000108.2R6V1-R6 HydrophobicContact CG1-CG 3.96Å
2S84.2Confident87.5Confident71 Ų71103.4 Ų103.450%0.49756%0.56SS.*  trans-58.1152.4-178.8171.70000111.3M4 S5 R6S2-M4 PolarHBondContact O-N 3.5Å; S2-M4 PolarHBondContact OG-N 3.36Å; S2-S5 WeakPolarHBondContact O-CB 3.31Å; S2-S5 PolarHBondContact O-N 3.49Å; S2-R6 PolarHBondContact O-N 3.04Å; S2-R6 VanDerWaalsContact O-N 3.08Å
3V82.9Confident87.9Confident111 Ų111104.5 Ų104.567%0.67356%0.564SS**Hα-helixtrans-53.4-35.7174.9178.30000110.9R6 L7V3-R6 PolarHBondContact O-N 3.45Å; V3-L7 PolarHBondContact O-N 3.12Å
4M84.8Confident88.2Confident105 Ų105105.7 Ų105.752%0.51757%0.569SS.*Hα-helixtrans-64.9-42.4174.3-70.3-61.789.500113.3S2 R6 L7 I8S2-M4 PolarHBondContact O-N 3.5Å; S2-M4 PolarHBondContact OG-N 3.36Å; M4-R6 VanDerWaalsContact C-N 3.28Å; M4-R6 PolarHBondContact O-N 3.34Å; M4-L7 HydrophobicContact CE-CB 4.28Å; M4-L7 HydrophobicContact CE-CD2 3.7Å; M4-L7 PolarHBondContact O-N 2.8Å; M4-L7 HydrophobicContact SD-CD2 4.43Å; M4-I8 WeakPolarHBondContact O-CD1 3.34Å; M4-I8 VanDerWaalsContact O-CG1 3.23Å; M4-I8 WeakPolarHBondContact O-CG1 3.43Å; M4-I8 PolarHBondContact O-N 3.3Å
5S86.4Confident88.2Confident52 Ų52106.9 Ų106.936%0.36457%0.572SS.*Hα-helixtrans-63.6-36.1175-540000111.8S2 L9S2-S5 WeakPolarHBondContact O-CB 3.31Å; S2-S5 PolarHBondContact O-N 3.49Å; S5-L9 WeakPolarHBondContact O-CB 3.42Å; S5-L9 WeakPolarHBondContact O-CD1 3.36Å; S5-L9 WeakPolarHBondContact O-CG 3.39Å; S5-L9 PolarHBondContact O-N 3.36Å
6R91.2Very high88.1Confident153 Ų153104.6 Ų104.658%0.57757%0.565SS**Hα-helixtrans-67.8-41.1175.8-64.1179.5-178.3-100.55.7111.9V1 S2 V3 M4 L9 L10V1-R6 HydrophobicContact CG1-CG 3.96Å; S2-R6 PolarHBondContact O-N 3.04Å; S2-R6 VanDerWaalsContact O-N 3.08Å; V3-R6 PolarHBondContact O-N 3.45Å; M4-R6 VanDerWaalsContact C-N 3.28Å; M4-R6 PolarHBondContact O-N 3.34Å; R6-L9 PolarHBondContact O-N 3.04Å; R6-L10 WeakPolarHBondContact O-CG 3.23Å; R6-L10 PolarHBondContact O-N 3.46Å
7L91.8Very high87.8Confident90 Ų90103.1 Ų103.147%0.47156%0.56SS.*Hα-helixtrans-63.2-45.5176.9-174.667.8000111.4V3 M4 L9 L10 L11V3-L7 PolarHBondContact O-N 3.12Å; M4-L7 HydrophobicContact CE-CB 4.28Å; M4-L7 HydrophobicContact CE-CD2 3.7Å; M4-L7 PolarHBondContact O-N 2.8Å; M4-L7 HydrophobicContact SD-CD2 4.43Å; L7-L9 PolarHBondContact O-N 3.48Å; L7-L10 PolarHBondContact O-N 3.38Å; L7-L11 WeakPolarHBondContact O-CB 3.48Å; L7-L11 PolarHBondContact O-N 3.04Å
8I93.8Very high87.3Confident106 Ų106100.3 Ų100.354%0.54455%0.55SS.*Hα-helixtrans-60.8-45.6177.1-67.3164000110.6M4 L10 L11 V12M4-I8 WeakPolarHBondContact O-CD1 3.34Å; M4-I8 VanDerWaalsContact O-CG1 3.23Å; M4-I8 WeakPolarHBondContact O-CG1 3.43Å; M4-I8 PolarHBondContact O-N 3.3Å; I8-L10 PolarHBondContact O-N 3.34Å; I8-L11 WeakPolarHBondContact O-CB 3.31Å; I8-L11 PolarHBondContact O-N 3.39Å; I8-V12 WeakPolarHBondContact O-CG2 3.49Å; I8-V12 PolarHBondContact O-N 2.81Å
9L92.8Very high86.6Confident107 Ų10798.3 Ų98.356%0.5655%0.548SS*.Hα-helixtrans-60.7-43.3177.4-73.8168.8000112.2S5 R6 L7 V12 L13S5-L9 WeakPolarHBondContact O-CB 3.42Å; S5-L9 WeakPolarHBondContact O-CD1 3.36Å; S5-L9 WeakPolarHBondContact O-CG 3.39Å; S5-L9 PolarHBondContact O-N 3.36Å; R6-L9 PolarHBondContact O-N 3.04Å; L7-L9 PolarHBondContact O-N 3.48Å; L9-V12 PolarHBondContact O-N 3.42Å; L9-L13 PolarHBondContact O-N 3.46Å
10L93.8Very high85.8Confident119 Ų11997.2 Ų97.262%0.62354%0.538SS*.Hα-helixtrans-63.1-41.3175.7-75.7168.3000111.9R6 L7 I8 L13 L14R6-L10 WeakPolarHBondContact O-CG 3.23Å; R6-L10 PolarHBondContact O-N 3.46Å; L7-L10 PolarHBondContact O-N 3.38Å; I8-L10 PolarHBondContact O-N 3.34Å; L10-L13 PolarHBondContact O-N 3.23Å; L10-L14 WeakPolarHBondContact O-CB 3.47Å; L10-L14 PolarHBondContact O-N 2.97Å
11L93.9Very high84.9Confident108 Ų10898 Ų9857%0.56554%0.541SS*.Hα-helixtrans-61.9-46.5177.9-13989.2000111.3L7 I8 L14 M15L7-L11 WeakPolarHBondContact O-CB 3.48Å; L7-L11 PolarHBondContact O-N 3.04Å; I8-L11 WeakPolarHBondContact O-CB 3.31Å; I8-L11 PolarHBondContact O-N 3.39Å; L11-L14 PolarHBondContact O-N 3.37Å; L11-M15 VanDerWaalsContact O-CG 3.27Å; L11-M15 WeakPolarHBondContact O-CG 3.46Å; L11-M15 PolarHBondContact O-N 2.89Å
12V93.5Very high85Confident86 Ų8695.6 Ų95.652%0.52153%0.53SS..Hα-helixtrans-61.9-45.4177.5172.10000110.6I8 L9 L14 M15 C16I8-V12 WeakPolarHBondContact O-CG2 3.49Å; I8-V12 PolarHBondContact O-N 2.81Å; L9-V12 PolarHBondContact O-N 3.42Å; V12-L14 VanDerWaalsContact C-N 3.32Å; V12-L14 PolarHBondContact O-N 3.11Å; V12-M15 PolarHBondContact O-N 3.36Å; V12-C16 PolarHBondContact O-N 2.98Å; V12-C16 PolarHBondContact O-SG 2.94Å
13L93.3Very high83.6Confident117 Ų11798.7 Ų98.761%0.61354%0.542SS*.Hα-helixtrans-59.2-45177-122.5112.7000111.6L9 L10 M15 C16 V17L9-L13 PolarHBondContact O-N 3.46Å; L10-L13 PolarHBondContact O-N 3.23Å; L13-M15 VanDerWaalsContact C-N 3.34Å; L13-M15 PolarHBondContact O-N 2.95Å; L13-C16 PolarHBondContact O-N 3.27Å; L13-V17 WeakPolarHBondContact O-CG2 3.21Å; L13-V17 PolarHBondContact O-N 3.45Å
14L91.9Very high82.3Confident122 Ų12297.2 Ų97.264%0.63954%0.541SS*.Hα-helixtrans-62.9-42.1179.8-170.765.1000111.4L10 L11 V12 V17 S18L10-L14 WeakPolarHBondContact O-CB 3.47Å; L10-L14 PolarHBondContact O-N 2.97Å; L11-L14 PolarHBondContact O-N 3.37Å; V12-L14 VanDerWaalsContact C-N 3.32Å; V12-L14 PolarHBondContact O-N 3.11Å; L14-V17 PolarHBondContact O-N 3.19Å; L14-S18 WeakPolarHBondContact O-CB 3.35Å; L14-S18 PolarHBondContact O-N 3.06Å; L14-S18 PolarHBondContact O-OG 2.96Å
15M88.3Confident80.8Confident124 Ų12498.4 Ų98.461%0.61155%0.545SS*.Hα-helixtrans-64.2-40.1175.7-70-63.7-66.600112.6L11 V12 L13 V17 S18 A19L11-M15 VanDerWaalsContact O-CG 3.27Å; L11-M15 WeakPolarHBondContact O-CG 3.46Å; L11-M15 PolarHBondContact O-N 2.89Å; V12-M15 PolarHBondContact O-N 3.36Å; L13-M15 VanDerWaalsContact C-N 3.34Å; L13-M15 PolarHBondContact O-N 2.95Å; M15-V17 VanDerWaalsContact C-N 3.35Å; M15-S18 WeakPolarHBondContact CA-OG 3.39Å; M15-S18 PolarHBondContact O-OG 3.29Å; M15-A19 VanDerWaalsContact O-CB 3.3Å; M15-A19 WeakPolarHBondContact O-CB 3.13Å; M15-A19 PolarHBondContact O-N 2.96Å
16C86.4Confident78.9Confident69 Ų69102.5 Ų102.547%0.46656%0.558SS.*Hα-helixtrans-67.1-36176.1-67.60000112.4V12 L13 Q20V12-C16 PolarHBondContact O-N 2.98Å; V12-C16 PolarHBondContact O-SG 2.94Å; L13-C16 PolarHBondContact O-N 3.27Å; C16-Q20 VanDerWaalsContact O-CG 3.29Å; C16-Q20 WeakPolarHBondContact O-CG 3.29Å; C16-Q20 PolarHBondContact O-N 3.38Å; C16-Q20 PolarHBondContact O-NE2 3.15Å
17V84.1Confident76.7Confident79 Ų79104.9 Ų104.948%0.47957%0.567SS.*Hα-helixtrans-72-44.5176.3172.80000110.5L13 L14 M15 Q20 L21L13-V17 WeakPolarHBondContact O-CG2 3.21Å; L13-V17 PolarHBondContact O-N 3.45Å; L14-V17 PolarHBondContact O-N 3.19Å; M15-V17 VanDerWaalsContact C-N 3.35Å; V17-Q20 PolarHBondContact O-N 3.43Å; V17-L21 WeakPolarHBondContact O-CB 3.36Å; V17-L21 PolarHBondContact O-N 2.86Å
18S77.9Confident74.8Confident54 Ų54104 Ų10438%0.37857%0.569SS.*Hα-helixtrans-65.7-39.1179.9640000112.5L14 M15 Q20 L21 S22L14-S18 WeakPolarHBondContact O-CB 3.35Å; L14-S18 PolarHBondContact O-N 3.06Å; L14-S18 PolarHBondContact O-OG 2.96Å; M15-S18 WeakPolarHBondContact CA-OG 3.39Å; M15-S18 PolarHBondContact O-OG 3.29Å; S18-Q20 VanDerWaalsContact C-N 3.33Å; S18-Q20 PolarHBondContact O-N 3.41Å; S18-L21 PolarHBondContact O-N 3.28Å; S18-S22 VanDerWaalsContact O-CB 3.27Å; S18-S22 WeakPolarHBondContact O-CB 3.22Å; S18-S22 PolarHBondContact O-N 3.08Å
19A74.8Confident72.8Confident62 Ų62107 Ų10751%0.51258%0.58SS.*Hα-helixtrans-60.7-42.4174.300000111.9M15 S22 D23M15-A19 VanDerWaalsContact O-CB 3.3Å; M15-A19 WeakPolarHBondContact O-CB 3.13Å; M15-A19 PolarHBondContact O-N 2.96Å; A19-S22 PolarHBondContact O-N 3.38Å; A19-D23 PolarHBondContact O-N 2.88Å
20Q70.6Confident71.1Confident75 Ų75105.1 Ų105.135%0.3559%0.587SS.*Hα-helixtrans-70.8-33.8176.9-70.8-178.197.700112.9C16 V17 S18 A24 L70C16-Q20 VanDerWaalsContact O-CG 3.29Å; C16-Q20 WeakPolarHBondContact O-CG 3.29Å; C16-Q20 PolarHBondContact O-N 3.38Å; C16-Q20 PolarHBondContact O-NE2 3.15Å; V17-Q20 PolarHBondContact O-N 3.43Å; S18-Q20 VanDerWaalsContact C-N 3.33Å; S18-Q20 PolarHBondContact O-N 3.41Å; Q20-A24 PolarHBondContact O-N 3.16Å; Q20-A24 VanDerWaalsContact O-N 3.12Å; Q20-L70 VanDerWaalsContact OE1-CD2 3.27Å
21L66.8Low68.9Low114 Ų114109.9 Ų109.960%0.59760%0.597SS**Hα-helixtrans-74.5-32.6176-150.471.4000111.4V17 S18 A24 Q25V17-L21 WeakPolarHBondContact O-CB 3.36Å; V17-L21 PolarHBondContact O-N 2.86Å; S18-L21 PolarHBondContact O-N 3.28Å; L21-A24 CarbonylContact O-C 3.43Å; L21-A24 PolarHBondContact O-N 2.95Å; L21-Q25 WeakPolarHBondContact O-CB 3.27Å; L21-Q25 WeakPolarHBondContact O-CG 3.3Å; L21-Q25 PolarHBondContact O-N 3.5Å
22S61.7Low66.6Low83 Ų83114.6 Ų114.658%0.5861%0.608SS**Hα-helixtrans-67.2-35.7172.5-169.80000111.9S18 A19 A24 Q25 H26S18-S22 VanDerWaalsContact O-CB 3.27Å; S18-S22 WeakPolarHBondContact O-CB 3.22Å; S18-S22 PolarHBondContact O-N 3.08Å; A19-S22 PolarHBondContact O-N 3.38Å; S22-A24 VanDerWaalsContact C-N 3.33Å; S22-Q25 CarbonylContact O-C 3.14Å; S22-Q25 PolarHBondContact O-N 3.4Å; S22-H26 PolarHBondContact O-N 3.29Å
23D56Low64.8Low137 Ų137115.9 Ų115.973%0.73362%0.619SS**Hα-helixtrans-66.2-36.4171.1-170.747000111.4A19 Q25 H26A19-D23 PolarHBondContact O-N 2.88Å; D23-Q25 VanDerWaalsContact C-N 3.29Å; D23-Q25 PolarHBondContact O-N 2.9Å; D23-H26 PolarHBondContact O-N 2.95Å
24A54.1Low63.4Low80 Ų80113.9 Ų113.966%0.66163%0.626SS**Hα-helixtrans-75.8-14.9171.200000114Q20 L21 S22Q20-A24 PolarHBondContact O-N 3.16Å; Q20-A24 VanDerWaalsContact O-N 3.12Å; L21-A24 CarbonylContact O-C 3.43Å; L21-A24 PolarHBondContact O-N 2.95Å; S22-A24 VanDerWaalsContact C-N 3.33Å
25Q53.3Low61.4Low129 Ų129111.5 Ų111.560%0.60363%0.632SS**THydrogen-bonded Turntrans-105.941.6173.7-66.4-90-53.100109.1L21 S22 D23 W27L21-Q25 WeakPolarHBondContact O-CB 3.27Å; L21-Q25 WeakPolarHBondContact O-CG 3.3Å; L21-Q25 PolarHBondContact O-N 3.5Å; S22-Q25 CarbonylContact O-C 3.14Å; S22-Q25 PolarHBondContact O-N 3.4Å; D23-Q25 VanDerWaalsContact C-N 3.29Å; D23-Q25 PolarHBondContact O-N 2.9Å; Q25-W27 PolarHBondContact O-N 3.28Å
26H47.8Very low59.7Low138 Ų138115.1 Ų115.164%0.63964%0.644SS**  trans-6697.9159.2-169.474.4000106.3S22 D23 S28 H29S22-H26 PolarHBondContact O-N 3.29Å; D23-H26 PolarHBondContact O-N 2.95Å; H26-S28 PolarHBondContact O-N 3.42Å; H26-H29 AromaticContact CE1-CD2 3.7Å; H26-H29 AromaticContact NE2-CD2 3.9Å
27W45.2Very low58.4Low203 Ų203122.3 Ų122.377%0.76966%0.661SS**  trans-44.2130.5166.1-72.123.7000106.5Q25 H29Q25-W27 PolarHBondContact O-N 3.28Å; W27-H29 PolarHBondContact O-N 3.26Å
28S51.7Low56.9Low73 Ų73127 Ų12751%0.5168%0.678SS.*  trans-60.495.1172.346.40000107.5H26 G30 W31H26-S28 PolarHBondContact O-N 3.42Å; S28-G30 PolarHBondContact O-N 3.45Å; S28-W31 PolarHBondContact OG-NE1 3.3Å
29H52.2Low55.3Low168 Ų168132.1 Ų132.178%0.77870%0.7SS**THydrogen-bonded Turntrans-67.269174.3-91.7-83000109.4H26 W27H26-H29 AromaticContact CE1-CD2 3.7Å; H26-H29 AromaticContact NE2-CD2 3.9Å; W27-H29 PolarHBondContact O-N 3.26Å
30G56.7Low53.8Low68 Ų68135 Ų13570%0.70171%0.707SS**THydrogen-bonded Turntrans162.610.4-179.200000117.8S28 Y32S28-G30 PolarHBondContact O-N 3.45Å; G30-Y32 PolarHBondContact O-N 2.96Å
31W46.1Very low53Low218 Ų218136.4 Ų136.483%0.82673%0.725SS**  trans-79.388.4162.4-68.462.9000107S28 P33S28-W31 PolarHBondContact OG-NE1 3.3Å; W31-P33 VanDerWaalsContact O-CD 3.31Å; W31-P33 WeakPolarHBondContact O-CD 3.49Å
32Y46.7Very low51.7Low207 Ų207141.3 Ų141.381%0.81274%0.742SS**  trans-60.2117.1161.8-152.5-92.6000106.7G30 G34G30-Y32 PolarHBondContact O-N 2.96Å; Y32-G34 PolarHBondContact O-N 2.91Å
33P54.6Low50.4Low113 Ų113140.9 Ų140.973%0.73475%0.751SS**SBendtrans-70.4120.1-178.428.6-29.9000107.9W31W31-P33 VanDerWaalsContact O-CD 3.31Å; W31-P33 WeakPolarHBondContact O-CD 3.49Å
34G64.7Low49.9Very low75 Ų75139.5 Ų139.577%0.77376%0.759SS**  trans71.975.2167.600000115.7Y32 K36Y32-G34 PolarHBondContact O-N 2.91Å; G34-K36 PolarHBondContact O-N 3.29Å
35G49.7Very low49.1Very low73 Ų73141.3 Ų141.375%0.75377%0.766SS**  trans-87.598.3164.600000111.2R37G35-R37 PolarHBondContact O-N 3.48Å
36K52.2Low48.4Very low200 Ų200144 Ų14487%0.8778%0.779SS**  trans-68.1117.5159.3-166.9-177.1-178.1-169.80106.9G34G34-K36 PolarHBondContact O-N 3.29Å
37R60.5Low48Very low219 Ų219146.2 Ų146.283%0.82679%0.792SS**SBendtrans-8.4129.2167.9-56.3178.3-174.7109.12.7116.3G35G35-R37 PolarHBondContact O-N 3.48Å
38E52.7Low47.8Very low177 Ų177142.3 Ų142.383%0.82780%0.795SS**  trans48.2111.1144.8-54.7-81.3161.400117
39L43.3Very low47.6Very low162 Ų162147.6 Ų147.685%0.84881%0.812SS**  trans-161.399.6145.3-112.9143.7000111.2
40D43.3Very low47.2Very low124 Ų124148 Ų14866%0.66381%0.814SS**  trans36.2115.1141.9-59.9-42.8000121
41S53.4Low46.7Very low103 Ų103152.6 Ų152.672%0.7282%0.821SS**  trans30.4101132.1-290000118.3
42F40Very low46.4Very low217 Ų217151.4 Ų151.495%0.95282%0.821SS**  trans-157.2126.4146-89.7-73.1000112
43G34.6Very low46.2Very low75 Ų75149.7 Ų149.777%0.77383%0.826SS**  trans94.7104.1144.300000116.6S45G43-S45 PolarHBondContact O-N 2.68Å
44A44.2Very low46Very low108 Ų108147.9 Ų147.989%0.89382%0.815SS**  trans-45.3132.1159.800000112.3
45S37.8Very low45.1Very low118 Ų118152.9 Ų152.983%0.82582%0.818SS**  trans-157.2123.6143-170.50000108.6G43G43-S45 PolarHBondContact O-N 2.68Å
46E38.8Very low45.2Very low185 Ų185154.1 Ų154.186%0.86482%0.821SS**  trans-58.2165.4-174.6-65.2159.9112.400114.1
47M40.3Very low45Very low185 Ų185148.5 Ų148.591%0.91182%0.82SS**  trans97.580.9150.6-155.3-173.1-16800117.1
48S40.7Very low44.2Very low120 Ų120146.6 Ų146.684%0.83982%0.82SS**  -164.569.4119.6-159.80000108.6E50S48-E50 PolarHBondContact O-N 2.86Å
49E46.8Very low44.1Very low184 Ų184141.9 Ų141.986%0.8681%0.806SS**  trans-54.9123.2148.5-63.8172.5135.600104.6
50E43.9Very low44.3Very low177 Ų177138.5 Ų138.583%0.82780%0.796SS**  -162.7115.467.9-26.7178.6-177.600104.5S48S48-E50 PolarHBondContact O-N 2.86Å
51I46.5Very low44.5Very low165 Ų165143.5 Ų143.585%0.84681%0.807SS**SBend-168103.781.3-72.4144.8000105.5
52K39.9Very low44.4Very low192 Ų192146.2 Ų146.284%0.83581%0.813SS**  trans-156.781.6155.6-96.4-175-170.7170.10108.7C54K52-C54 VanDerWaalsContact C-N 3.28Å; K52-C54 PolarHBondContact O-N 3.07Å; K52-C54 VanDerWaalsContact O-N 3.17Å
53L41.6Very low44.8Very low172 Ų172145.6 Ų145.690%0.90180%0.804SS**  trans-73.989.1152.3-90.1140.7000107.1
54C50.3Low45.5Very low74 Ų74147.4 Ų147.450%0.580%0.802SS.*  trans-123.479.7159.5-84.80000106.8K52 C59K52-C54 VanDerWaalsContact C-N 3.28Å; K52-C54 PolarHBondContact O-N 3.07Å; K52-C54 VanDerWaalsContact O-N 3.17Å; C54-C59 HydrophobicContact CB-CB 4.14Å; C54-C59 WeakPolarHBondContact CB-SG 3.29Å; C54-C59 WeakPolarHBondContact SG-CB 3.34Å; C54-C59 CovalentContact SG-SG 2.08Å; C54-C59 PolarHBondContact SG-SG 3.38Å
55E47.3Very low45.8Very low180 Ų180150.2 Ų150.284%0.84180%0.797SS**  trans-98129.5165.1-170.1143.9-168.500108.5
56A50.7Low46.6Very low99 Ų99154 Ų15482%0.81879%0.793SS**SBendtrans62.687.4176.600000117E58A56-E58 PolarHBondContact O-N 2.99Å
57G47.9Very low47.6Very low82 Ų82154 Ų15485%0.84579%0.785SS**SBendtrans101.5-32.8133.600000118.6
58E43.8Very low48.8Very low180 Ų180148.8 Ų148.884%0.84176%0.761SS**  trans-14384.8-177.4-65-170160.900111.4A56 S60A56-E58 PolarHBondContact O-N 2.99Å; E58-S60 PolarHBondContact O-N 2.93Å
59C50.4Low50.3Low77 Ų77147.2 Ų147.252%0.5275%0.746SS.*  trans-76.181.8172.2-144.30000107.3C54 Y61C54-C59 HydrophobicContact CB-CB 4.14Å; C54-C59 WeakPolarHBondContact CB-SG 3.29Å; C54-C59 WeakPolarHBondContact SG-CB 3.34Å; C54-C59 CovalentContact SG-SG 2.08Å; C54-C59 PolarHBondContact SG-SG 3.38Å; C59-Y61 PolarHBondContact O-N 3.37Å
60S47.6Very low51.5Low92 Ų92142.9 Ų142.964%0.64373%0.729SS**  trans-65116.8169.361.20000107.4E58 L62E58-S60 PolarHBondContact O-N 2.93Å; S60-L62 PolarHBondContact O-N 2.99Å
61Y47.4Very low52.9Low229 Ų229142.7 Ų142.790%0.89872%0.72SS**  trans-53.9104.2171.2-75.4-95.9000107.2C59 R63C59-Y61 PolarHBondContact O-N 3.37Å; Y61-R63 PolarHBondContact O-N 3Å
62L52.3Low54.2Low160 Ų160138.5 Ų138.584%0.83870%0.7SS**  trans-65.687.7164.6-70179.7000105.4S60 P64S60-L62 PolarHBondContact O-N 2.99Å; L62-P64 WeakPolarHBondContact O-CD 3.38Å; L62-P64 VanDerWaalsContact O-N 3.09Å
63R48.5Very low56.2Low203 Ų203134.4 Ų134.477%0.76669%0.686SS**  trans-47.1122168.1-173.6-177.4-170.1126.33.9105Y61 Q65Y61-R63 PolarHBondContact O-N 3Å; R63-Q65 PolarHBondContact O-N 3Å
64P48.8Very low58.3Low113 Ų113130.6 Ų130.673%0.73467%0.669SS**  trans-50117.8173-23.931.8000106L62 R66L62-P64 WeakPolarHBondContact O-CD 3.38Å; L62-P64 VanDerWaalsContact O-N 3.09Å; P64-R66 PolarHBondContact O-N 2.84Å
65Q51.3Low60.1Low168 Ų168131.4 Ų131.479%0.78567%0.668SS**  trans-6393.7-177.4-177.1173.3-1.500105.9R63 R67R63-Q65 PolarHBondContact O-N 3Å; Q65-R67 PolarHBondContact O-N 3.19Å
66R54.4Low62Low196 Ų196126.6 Ų126.674%0.7465%0.648SS**  trans-65.774.8-174.1-170.8-171.2-1781727.3108.4P64 N68P64-R66 PolarHBondContact O-N 2.84Å; R66-N68 VanDerWaalsContact C-N 3.28Å; R66-N68 WeakPolarHBondContact CG-OD1 3.4Å; R66-N68 PolarHBondContact NE-OD1 2.97Å; R66-N68 PolarHBondContact O-N 3.02Å
67R59.5Low63.8Low187 Ų187124.3 Ų124.371%0.70663%0.63SS**  trans-72.393.2166.7-98.2-179.5168167.2-2105.6Q65 T69Q65-R67 PolarHBondContact O-N 3.19Å; R67-T69 VanDerWaalsContact C-N 3.3Å; R67-T69 PolarHBondContact O-N 3.43Å
68N64.8Low65.9Low74 Ų74125.3 Ų125.340%0.39662%0.615SS.*  trans-61.196.8167.3-88.119.8000107.5R66 L70 R71 N72R66-N68 VanDerWaalsContact C-N 3.28Å; R66-N68 WeakPolarHBondContact CG-OD1 3.4Å; R66-N68 PolarHBondContact NE-OD1 2.97Å; R66-N68 PolarHBondContact O-N 3.02Å; N68-L70 PolarHBondContact O-N 3.26Å; N68-R71 HydrophobicContact CB-CB 3.62Å; N68-R71 WeakPolarHBondContact O-CA 3.36Å; N68-R71 VanDerWaalsContact O-CB 3.26Å; N68-R71 WeakPolarHBondContact O-CB 3.26Å; N68-R71 PolarHBondContact O-N 3.01Å; N68-N72 PolarHBondContact O-N 3.15Å; N68-N72 VanDerWaalsContact O-N 3.15Å
69T71.6Confident68.1Low87 Ų87119 Ų11953%0.53459%0.593SS.*Hα-helixtrans-52.7-39.1178.5-54.20000111.3R67 R71 N72 I73R67-T69 VanDerWaalsContact C-N 3.3Å; R67-T69 PolarHBondContact O-N 3.43Å; T69-R71 VanDerWaalsContact C-N 3.34Å; T69-R71 PolarHBondContact O-N 2.77Å; T69-N72 PolarHBondContact O-N 3.48Å; T69-N72 VanDerWaalsContact O-N 3.16Å; T69-I73 HydrophobicContact CG2-CD1 4.11Å; T69-I73 WeakPolarHBondContact O-CG1 3.4Å; T69-I73 PolarHBondContact O-N 3.12Å
70L72.3Confident70Confident93 Ų93122.6 Ų122.649%0.48760%0.596SS.*Hα-helixtrans-58.5-41.5171.9-67.2175.3000113.3Q20 N68 N72 I73 V74Q20-L70 VanDerWaalsContact OE1-CD2 3.27Å; N68-L70 PolarHBondContact O-N 3.26Å; L70-N72 VanDerWaalsContact C-N 3.29Å; L70-N72 PolarHBondContact O-N 2.89Å; L70-I73 PolarHBondContact O-N 3.29Å; L70-V74 WeakPolarHBondContact O-CB 3.3Å; L70-V74 WeakPolarHBondContact O-CG2 3.27Å; L70-V74 PolarHBondContact O-N 3.45Å
71R74.5Confident72Confident174 Ų174123 Ų12366%0.65759%0.588SS**Hα-helixtrans-62.8-40.7177.8-173.2-179.4177.3176.4-0.3110.1N68 T69 V74 L75N68-R71 HydrophobicContact CB-CB 3.62Å; N68-R71 WeakPolarHBondContact O-CA 3.36Å; N68-R71 VanDerWaalsContact O-CB 3.26Å; N68-R71 WeakPolarHBondContact O-CB 3.26Å; N68-R71 PolarHBondContact O-N 3.01Å; T69-R71 VanDerWaalsContact C-N 3.34Å; T69-R71 PolarHBondContact O-N 2.77Å; R71-V74 PolarHBondContact O-N 2.87Å; R71-L75 HydrophobicContact CG-CD1 3.95Å; R71-L75 HydrophobicContact CG-CG 4.39Å; R71-L75 VanDerWaalsContact O-CB 3.29Å; R71-L75 WeakPolarHBondContact O-CB 3.48Å; R71-L75 WeakPolarHBondContact O-CG 3.23Å; R71-L75 PolarHBondContact O-N 3.29Å
72N74.2Confident74Confident77 Ų77117.2 Ų117.241%0.41257%0.572SS.*Hα-helixtrans-66.4-42.6176.6-66.6-31.2000111.9N68 T69 L70 L75 D76N68-N72 PolarHBondContact O-N 3.15Å; N68-N72 VanDerWaalsContact O-N 3.15Å; T69-N72 PolarHBondContact O-N 3.48Å; T69-N72 VanDerWaalsContact O-N 3.16Å; L70-N72 VanDerWaalsContact C-N 3.29Å; L70-N72 PolarHBondContact O-N 2.89Å; N72-L75 PolarHBondContact O-N 2.67Å; N72-D76 WeakPolarHBondContact O-CB 3.37Å; N72-D76 PolarHBondContact O-N 2.89Å
73I81.9Confident75.4Confident105 Ų105116.6 Ų116.654%0.53857%0.565SS.*Hα-helixtrans-62.5-45.2176.8-66.2165.2000110.9T69 L70 D76 A77T69-I73 HydrophobicContact CG2-CD1 4.11Å; T69-I73 WeakPolarHBondContact O-CG1 3.4Å; T69-I73 PolarHBondContact O-N 3.12Å; L70-I73 PolarHBondContact O-N 3.29Å; I73-D76 PolarHBondContact O-N 3.36Å; I73-A77 WeakPolarHBondContact O-CB 3.41Å; I73-A77 PolarHBondContact O-N 3.17Å
74V85.8Confident76.8Confident92 Ų92114.6 Ų114.656%0.55856%0.562SS**Hα-helixtrans-64.1-43178170.30000111.1L70 R71 A77 L78L70-V74 WeakPolarHBondContact O-CB 3.3Å; L70-V74 WeakPolarHBondContact O-CG2 3.27Å; L70-V74 PolarHBondContact O-N 3.45Å; R71-V74 PolarHBondContact O-N 2.87Å; V74-A77 PolarHBondContact O-N 2.88Å; V74-L78 VanDerWaalsContact O-CB 3.3Å; V74-L78 WeakPolarHBondContact O-CB 3.41Å; V74-L78 PolarHBondContact O-N 3.34Å
75L86.6Confident77.6Confident92 Ų92119.4 Ų119.448%0.48257%0.565SS.*Hα-helixtrans-65-40.1177.1-73.6172000112R71 N72 L78 A79R71-L75 HydrophobicContact CG-CD1 3.95Å; R71-L75 HydrophobicContact CG-CG 4.39Å; R71-L75 VanDerWaalsContact O-CB 3.29Å; R71-L75 WeakPolarHBondContact O-CB 3.48Å; R71-L75 WeakPolarHBondContact O-CG 3.23Å; R71-L75 PolarHBondContact O-N 3.29Å; N72-L75 PolarHBondContact O-N 2.67Å; L75-L78 PolarHBondContact O-N 3.49Å; L75-A79 WeakPolarHBondContact O-CB 3.21Å; L75-A79 PolarHBondContact O-N 3.17Å
76D86.8Confident77.7Confident78 Ų78122.5 Ų122.542%0.41758%0.576SS.*Hα-helixtrans-66.2-43.4177.1-170.761.4000111.6N72 I73 L78 A79 R80N72-D76 WeakPolarHBondContact O-CB 3.37Å; N72-D76 PolarHBondContact O-N 2.89Å; I73-D76 PolarHBondContact O-N 3.36Å; D76-L78 VanDerWaalsContact C-N 3.35Å; D76-L78 PolarHBondContact O-N 2.08Å; D76-A79 PolarHBondContact O-N 3.5Å; D76-R80 VanDerWaalsContact O-CG 3.31Å; D76-R80 WeakPolarHBondContact O-CG 3.32Å; D76-R80 PolarHBondContact O-N 3.4Å; D76-R80 IonicContact OD1-CZ 4Å; D76-R80 IonicContact OD1-NE 3.78Å; D76-R80 IonicContact OD1-NH2 3.49Å; D76-R80 PolarHBondContact OD1-NH2 3.25Å; D76-R80 IonicContact OD2-CZ 3.25Å; D76-R80 VanDerWaalsContact OD2-CZ 3.25Å; D76-R80 IonicContact OD2-NE 2.81Å; D76-R80 PolarHBondContact OD2-NE 3.49Å; D76-R80 IonicContact OD2-NH2 2.8Å; D76-R80 PolarHBondContact OD2-NH2 2.72Å
77A89.9Confident78.9Confident52 Ų52118.9 Ų118.943%0.4357%0.568SS.*Hα-helixtrans-61.7-4317500000111.9I73 V74 R80 E81I73-A77 WeakPolarHBondContact O-CB 3.41Å; I73-A77 PolarHBondContact O-N 3.17Å; V74-A77 PolarHBondContact O-N 2.88Å; A77-R80 PolarHBondContact O-N 2.81Å; A77-E81 PolarHBondContact O-N 2.72Å; A77-E81 VanDerWaalsContact O-N 3.11Å
78L91.8Very high79.9Confident102 Ų102115.3 Ų115.353%0.53456%0.561SS.*Hα-helixtrans-67.1-39.6178.5-168.9133.2000111.9V74 L75 D76 R80 E81 L82V74-L78 VanDerWaalsContact O-CB 3.3Å; V74-L78 WeakPolarHBondContact O-CB 3.41Å; V74-L78 PolarHBondContact O-N 3.34Å; L75-L78 PolarHBondContact O-N 3.49Å; D76-L78 VanDerWaalsContact C-N 3.35Å; D76-L78 PolarHBondContact O-N 2.08Å; L78-R80 VanDerWaalsContact C-N 3.34Å; L78-R80 PolarHBondContact O-N 2.84Å; L78-E81 PolarHBondContact O-N 3.23Å; L78-L82 HydrophobicContact CD2-CD1 3.73Å; L78-L82 HydrophobicContact CD2-CG 4.43Å; L78-L82 WeakPolarHBondContact O-CG 3.14Å; L78-L82 PolarHBondContact O-N 3.48Å
79A90.4Very high80.7Confident47 Ų47117.6 Ų117.639%0.38857%0.57SS.*Hα-helixtrans-61.7-41.7174.800000112L75 D76 L82 Q83L75-A79 WeakPolarHBondContact O-CB 3.21Å; L75-A79 PolarHBondContact O-N 3.17Å; D76-A79 PolarHBondContact O-N 3.5Å; A79-L82 PolarHBondContact O-N 3.2Å; A79-Q83 VanDerWaalsContact O-CG 3.31Å; A79-Q83 WeakPolarHBondContact O-CG 3.31Å; A79-Q83 PolarHBondContact O-N 3Å
80R89.1Confident81.3Confident154 Ų154119.4 Ų119.458%0.58157%0.572SS**Hα-helixtrans-64.2-39.4176.6-70.1172.7-164.8-82.7-4.2112.7D76 A77 L78 Q83 K84D76-R80 VanDerWaalsContact O-CG 3.31Å; D76-R80 WeakPolarHBondContact O-CG 3.32Å; D76-R80 PolarHBondContact O-N 3.4Å; D76-R80 IonicContact OD1-CZ 4Å; D76-R80 IonicContact OD1-NE 3.78Å; D76-R80 IonicContact OD1-NH2 3.49Å; D76-R80 PolarHBondContact OD1-NH2 3.25Å; D76-R80 IonicContact OD2-CZ 3.25Å; D76-R80 VanDerWaalsContact OD2-CZ 3.25Å; D76-R80 IonicContact OD2-NE 2.81Å; D76-R80 PolarHBondContact OD2-NE 3.49Å; D76-R80 IonicContact OD2-NH2 2.8Å; D76-R80 PolarHBondContact OD2-NH2 2.72Å; A77-R80 PolarHBondContact O-N 2.81Å; L78-R80 VanDerWaalsContact C-N 3.34Å; L78-R80 PolarHBondContact O-N 2.84Å; R80-Q83 PolarHBondContact O-N 2.71Å; R80-K84 PolarHBondContact O-N 3.21Å; R80-K84 VanDerWaalsContact O-N 3.12Å
81E90.2Very high81.8Confident99 Ų99121 Ų12146%0.46358%0.577SS.*Hα-helixtrans-68.3-37.8176.8-77.3-57.8137.200112.5A77 L78 K84 R85A77-E81 PolarHBondContact O-N 2.72Å; A77-E81 VanDerWaalsContact O-N 3.11Å; L78-E81 PolarHBondContact O-N 3.23Å; E81-K84 PolarHBondContact O-N 3.45Å; E81-R85 PolarHBondContact O-N 2.88Å
82L88.4Confident82.3Confident108 Ų108117.5 Ų117.557%0.56557%0.572SS**Hα-helixtrans-67.7-36.4175.2-69.7175000112.4L78 A79 K84 R85L78-L82 HydrophobicContact CD2-CD1 3.73Å; L78-L82 HydrophobicContact CD2-CG 4.43Å; L78-L82 WeakPolarHBondContact O-CG 3.14Å; L78-L82 PolarHBondContact O-N 3.48Å; A79-L82 PolarHBondContact O-N 3.2Å; L82-K84 VanDerWaalsContact C-N 3.34Å; L82-R85 PolarHBondContact O-N 3.26Å
83Q82.6Confident82.9Confident148 Ų148120.4 Ų120.469%0.69258%0.583SS**Hα-helixtrans-67.1-33.2174.5-71.3-71.4-43.500112.6A79 R80 R85A79-Q83 VanDerWaalsContact O-CG 3.31Å; A79-Q83 WeakPolarHBondContact O-CG 3.31Å; A79-Q83 PolarHBondContact O-N 3Å; R80-Q83 PolarHBondContact O-N 2.71Å; Q83-R85 VanDerWaalsContact C-N 3.31Å; Q83-R85 PolarHBondContact O-N 3.25Å
84K77.5Confident83Confident160 Ų160121.5 Ų121.570%0.69659%0.587SS**Hα-helixtrans-71.4-22.7175.1-86.9-178.4177.8176.20114.2R80 E81 L82R80-K84 PolarHBondContact O-N 3.21Å; R80-K84 VanDerWaalsContact O-N 3.12Å; E81-K84 PolarHBondContact O-N 3.45Å; L82-K84 VanDerWaalsContact C-N 3.34Å
85R65.9Low82.7Confident215 Ų215124 Ų12481%0.81159%0.589SS**THydrogen-bonded Turntrans-91.2-2.1-178.9-74-171.6-177.7-161.71113.7E81 L82 Q83E81-R85 PolarHBondContact O-N 2.88Å; L82-R85 PolarHBondContact O-N 3.26Å; Q83-R85 VanDerWaalsContact C-N 3.31Å; Q83-R85 PolarHBondContact O-N 3.25Å
86K53.7Low82.4Confident233 Ų233126.9 Ų126.9100%1.01360%0.599SS**  trans-104.10176.1-167177.3-174.7-1770109.7

Retrieved 86 of 86 residues in 49.7 ms (Link to these results)