A0A087Y3X0_POEFO Loading...

Midkine

Secreted protein that functions as cytokine and growth factor and mediates its signal through cell-surface proteoglycan and non-proteoglycan receptors. Regulates many processes like inflammatory response, cell proliferation, cell adhesion, cell growth, cell survival, tissue regeneration, cell differentiation and cell migration.

AlphaFold DB , UniProt , Accession A0A087Y3X0, Species POEFO (Poecilia formosa, Amazon molly), Gene MDK, Length 97 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M59.2Low72.9Confident177 Ų177121 Ų12187%0.87262%0.624SS**  0-64.10-59-79.2-104.200111.8S3 L4 F5M1-S3 PolarHBondContact O-N 3.15Å; M1-L4 PolarHBondContact O-N 3.31Å; M1-L4 VanDerWaalsContact O-N 3.15Å; M1-F5 WeakPolarHBondContact O-CD2 3.18Å; M1-F5 PolarHBondContact O-N 3.32Å
2R62.4Low73.4Confident230 Ų230120.1 Ų120.187%0.86862%0.62SS**Hα-helixtrans-56.7-40-177.2-72.2178.9167.6178.3-4.7115.6F5 S6R2-F5 PolarHBondContact O-N 2.87Å; R2-S6 PolarHBondContact O-N 2.98Å; R2-S6 VanDerWaalsContact O-N 3.15Å
3S63.6Low73.7Confident87 Ų87118.7 Ų118.761%0.60861%0.614SS**Hα-helixtrans-66.5-36.5178.4177.50000112.4M1 F5 S6 V7M1-S3 PolarHBondContact O-N 3.15Å; S3-F5 PolarHBondContact O-N 2.98Å; S3-S6 PolarHBondContact O-N 3.44Å; S3-V7 WeakPolarHBondContact O-CG2 3.26Å; S3-V7 PolarHBondContact O-N 3.24Å
4L67.6Low73.7Confident121 Ų121114.1 Ų114.163%0.63460%0.602SS**Hα-helixtrans-65.8-41.7178.1-58177.4000111.3M1 S6 V7 T8M1-L4 PolarHBondContact O-N 3.31Å; M1-L4 VanDerWaalsContact O-N 3.15Å; L4-S6 VanDerWaalsContact C-N 3.33Å; L4-S6 PolarHBondContact O-N 3.48Å; L4-V7 PolarHBondContact O-N 3.18Å; L4-T8 PolarHBondContact O-N 3.3Å; L4-T8 PolarHBondContact O-OG1 3.03Å
5F69Low73.6Confident144 Ų144113.6 Ų113.663%0.63260%0.599SS**Hα-helixtrans-62.8-37.5174.4-75.3-74.2000112.8M1 R2 S3 T8 L9M1-F5 WeakPolarHBondContact O-CD2 3.18Å; M1-F5 PolarHBondContact O-N 3.32Å; R2-F5 PolarHBondContact O-N 2.87Å; S3-F5 PolarHBondContact O-N 2.98Å; F5-T8 WeakPolarHBondContact CA-OG1 3.42Å; F5-T8 PolarHBondContact O-OG1 3.06Å; F5-L9 VanDerWaalsContact O-CB 3.29Å; F5-L9 WeakPolarHBondContact O-CB 3.39Å; F5-L9 PolarHBondContact O-N 2.95Å
6S75.5Confident73.3Confident67 Ų67111.4 Ų111.447%0.46959%0.592SS.*Hα-helixtrans-67.4-39176.5-169.80000111.9R2 S3 L4 L10R2-S6 PolarHBondContact O-N 2.98Å; R2-S6 VanDerWaalsContact O-N 3.15Å; S3-S6 PolarHBondContact O-N 3.44Å; L4-S6 VanDerWaalsContact C-N 3.33Å; L4-S6 PolarHBondContact O-N 3.48Å; S6-L10 WeakPolarHBondContact O-CB 3.39Å; S6-L10 WeakPolarHBondContact O-CD1 3.34Å; S6-L10 VanDerWaalsContact O-CG 3.26Å; S6-L10 WeakPolarHBondContact O-CG 3.29Å; S6-L10 PolarHBondContact O-N 3.15Å
7V79.4Confident72.8Confident88 Ų88111 Ų11153%0.53359%0.589SS.*Hα-helixtrans-70.6-42.6179.6174.10000110.8S3 L4 L10 L11S3-V7 WeakPolarHBondContact O-CG2 3.26Å; S3-V7 PolarHBondContact O-N 3.24Å; L4-V7 PolarHBondContact O-N 3.18Å; V7-L10 PolarHBondContact O-N 3.43Å; V7-L11 WeakPolarHBondContact O-CB 3.47Å; V7-L11 PolarHBondContact O-N 3.5Å
8T80.8Confident72Confident76 Ų76107.8 Ų107.847%0.46658%0.581SS.*Hα-helixtrans-66.1-38.2175.937.50000112.6L4 F5 L11 L12L4-T8 PolarHBondContact O-N 3.3Å; L4-T8 PolarHBondContact O-OG1 3.03Å; F5-T8 WeakPolarHBondContact CA-OG1 3.42Å; F5-T8 PolarHBondContact O-OG1 3.06Å; T8-L11 PolarHBondContact O-N 3.38Å; T8-L12 VanDerWaalsContact O-CD1 3.3Å; T8-L12 WeakPolarHBondContact O-CD1 3.3Å; T8-L12 PolarHBondContact O-N 3.36Å
9L82.1Confident71.4Confident125 Ų125107.2 Ų107.265%0.65458%0.581SS**Hα-helixtrans-65.6-43176.3-171.966.7000112F5 L11 L12 L13F5-L9 VanDerWaalsContact O-CB 3.29Å; F5-L9 WeakPolarHBondContact O-CB 3.39Å; F5-L9 PolarHBondContact O-N 2.95Å; L9-L11 VanDerWaalsContact C-N 3.3Å; L9-L11 PolarHBondContact O-N 3.33Å; L9-L12 PolarHBondContact O-N 3.47Å; L9-L13 WeakPolarHBondContact O-CB 3.32Å; L9-L13 PolarHBondContact O-N 3.24Å
10L81.2Confident70.5Confident112 Ų112108.9 Ų108.959%0.58659%0.585SS**Hα-helixtrans-61.5-39.8174.5-76.8167.6000111.7S6 V7 L13 A14S6-L10 WeakPolarHBondContact O-CB 3.39Å; S6-L10 WeakPolarHBondContact O-CD1 3.34Å; S6-L10 VanDerWaalsContact O-CG 3.26Å; S6-L10 WeakPolarHBondContact O-CG 3.29Å; S6-L10 PolarHBondContact O-N 3.15Å; V7-L10 PolarHBondContact O-N 3.43Å; L10-L13 PolarHBondContact O-N 3.05Å; L10-A14 PolarHBondContact O-N 3.36Å
11L81.5Confident69.4Low104 Ų104107.1 Ų107.155%0.54559%0.585SS.*Hα-helixtrans-66.4-43.8178.1-169.764.3000111.8V7 T8 L9 L13 A14 L15V7-L11 WeakPolarHBondContact O-CB 3.47Å; V7-L11 PolarHBondContact O-N 3.5Å; T8-L11 PolarHBondContact O-N 3.38Å; L9-L11 VanDerWaalsContact C-N 3.3Å; L9-L11 PolarHBondContact O-N 3.33Å; L11-L13 VanDerWaalsContact C-N 3.33Å; L11-L13 PolarHBondContact O-N 3.45Å; L11-A14 PolarHBondContact O-N 3.02Å; L11-L15 HydrophobicContact CG-CD1 4.22Å; L11-L15 WeakPolarHBondContact O-CD1 3.3Å; L11-L15 WeakPolarHBondContact O-CG 3.41Å; L11-L15 PolarHBondContact O-N 3.09Å; L11-L15 VanDerWaalsContact O-N 3.09Å
12L78.1Confident69Low110 Ų110105.2 Ų105.258%0.57658%0.579SS**Hα-helixtrans-60.4-42.9174.4-99.978.5000111.7T8 L9 A14 L15 T16T8-L12 VanDerWaalsContact O-CD1 3.3Å; T8-L12 WeakPolarHBondContact O-CD1 3.3Å; T8-L12 PolarHBondContact O-N 3.36Å; L9-L12 PolarHBondContact O-N 3.47Å; L12-A14 PolarHBondContact O-N 3.17Å; L12-L15 PolarHBondContact O-N 3.41Å; L12-T16 PolarHBondContact O-N 3Å; L12-T16 PolarHBondContact O-OG1 3.4Å
13L77.6Confident68.3Low102 Ų102102.7 Ų102.753%0.53457%0.574SS.*Hα-helixtrans-64.1-40.8179.4-168.764.9000111.8L9 L10 L11 L15 T16 L17L9-L13 WeakPolarHBondContact O-CB 3.32Å; L9-L13 PolarHBondContact O-N 3.24Å; L10-L13 PolarHBondContact O-N 3.05Å; L11-L13 VanDerWaalsContact C-N 3.33Å; L11-L13 PolarHBondContact O-N 3.45Å; L13-L15 PolarHBondContact O-N 3.47Å; L13-T16 WeakPolarHBondContact CA-OG1 3.49Å; L13-T16 PolarHBondContact O-N 2.8Å; L13-T16 PolarHBondContact O-OG1 3.28Å; L13-L17 HydrophobicContact CG-CD1 4.36Å; L13-L17 VanDerWaalsContact O-CG 3.3Å; L13-L17 WeakPolarHBondContact O-CG 3.4Å; L13-L17 PolarHBondContact O-N 3.48Å; L13-L17 VanDerWaalsContact O-N 3.08Å
14A74Confident67.6Low55 Ų55109.7 Ų109.746%0.45559%0.587SS.*Hα-helixtrans-62.5-40.4175.400000112.5L10 L11 L12 L17 A18L10-A14 PolarHBondContact O-N 3.36Å; L11-A14 PolarHBondContact O-N 3.02Å; L12-A14 PolarHBondContact O-N 3.17Å; A14-L17 PolarHBondContact O-N 3.48Å; A14-A18 PolarHBondContact O-N 3.11Å; A14-A18 VanDerWaalsContact O-N 3.11Å
15L72.3Confident66.6Low106 Ų106107.5 Ų107.556%0.55559%0.586SS**Hα-helixtrans-65.1-41.3177-74.5153.7000111.8L11 L12 L13 A18 V19L11-L15 HydrophobicContact CG-CD1 4.22Å; L11-L15 WeakPolarHBondContact O-CD1 3.3Å; L11-L15 WeakPolarHBondContact O-CG 3.41Å; L11-L15 PolarHBondContact O-N 3.09Å; L11-L15 VanDerWaalsContact O-N 3.09Å; L12-L15 PolarHBondContact O-N 3.41Å; L13-L15 PolarHBondContact O-N 3.47Å; L15-A18 PolarHBondContact O-N 3.02Å; L15-V19 WeakPolarHBondContact O-CG2 3.46Å; L15-V19 PolarHBondContact O-N 3.08Å; L15-V19 VanDerWaalsContact O-N 3.17Å
16T69.4Low65.4Low78 Ų78111 Ų11148%0.47960%0.602SS.*Hα-helixtrans-66.8-39.6177.648.10000112.7L12 L13 A18 V19 E20L12-T16 PolarHBondContact O-N 3Å; L12-T16 PolarHBondContact O-OG1 3.4Å; L13-T16 WeakPolarHBondContact CA-OG1 3.49Å; L13-T16 PolarHBondContact O-N 2.8Å; L13-T16 PolarHBondContact O-OG1 3.28Å; T16-A18 VanDerWaalsContact C-N 3.35Å; T16-A18 PolarHBondContact O-N 3.07Å; T16-V19 PolarHBondContact O-N 3.49Å; T16-E20 PolarHBondContact O-N 3.48Å
17L63.2Low64Low105 Ų105115 Ų11555%0.5561%0.612SS.*Hα-helixtrans-64.8-37.9176.2-69.6166.3000112.1L13 A14 V19 E20 A21L13-L17 HydrophobicContact CG-CD1 4.36Å; L13-L17 VanDerWaalsContact O-CG 3.3Å; L13-L17 WeakPolarHBondContact O-CG 3.4Å; L13-L17 PolarHBondContact O-N 3.48Å; L13-L17 VanDerWaalsContact O-N 3.08Å; A14-L17 PolarHBondContact O-N 3.48Å; L17-V19 VanDerWaalsContact C-N 3.33Å; L17-V19 PolarHBondContact O-N 3.24Å; L17-E20 PolarHBondContact O-N 3.15Å; L17-A21 PolarHBondContact O-N 3.47Å; L17-A21 VanDerWaalsContact O-N 3.15Å
18A59.8Low62.4Low54 Ų54118.7 Ų118.745%0.44662%0.623SS.*Hα-helixtrans-66.3-34175.600000112.6A14 L15 T16 N22A14-A18 PolarHBondContact O-N 3.11Å; A14-A18 VanDerWaalsContact O-N 3.11Å; L15-A18 PolarHBondContact O-N 3.02Å; T16-A18 VanDerWaalsContact C-N 3.35Å; T16-A18 PolarHBondContact O-N 3.07Å; A18-N22 PolarHBondContact O-ND2 3.24Å
19V59.9Low60.5Low96 Ų96124.4 Ų124.458%0.58264%0.642SS**Hα-helixtrans-73.8-37.6177.3168.10000111.9L15 T16 L17 N22L15-V19 WeakPolarHBondContact O-CG2 3.46Å; L15-V19 PolarHBondContact O-N 3.08Å; L15-V19 VanDerWaalsContact O-N 3.17Å; T16-V19 PolarHBondContact O-N 3.49Å; L17-V19 VanDerWaalsContact C-N 3.33Å; L17-V19 PolarHBondContact O-N 3.24Å; V19-N22 PolarHBondContact O-N 2.81Å
20E53.4Low58.4Low140 Ų140121.7 Ų121.765%0.65464%0.644SS**Hα-helixtrans-70.7-33.1177.5-73.8-170.8170.400113.1T16 L17 N22 K23T16-E20 PolarHBondContact O-N 3.48Å; L17-E20 PolarHBondContact O-N 3.15Å; E20-N22 PolarHBondContact O-N 2.9Å; E20-K23 PolarHBondContact O-N 2.94Å; E20-K23 VanDerWaalsContact O-N 3.11Å
21A48.1Very low56.5Low72 Ų72119.8 Ų119.860%0.59565%0.652SS**Hα-helixtrans-63.7-21.9172.200000113.2L17L17-A21 PolarHBondContact O-N 3.47Å; L17-A21 VanDerWaalsContact O-N 3.15Å
22N50.8Low54.4Low137 Ų137122.9 Ų122.973%0.73366%0.661SS**THydrogen-bonded Turntrans-87.7-10.5176.1-79.5-76000113.8A18 V19 E20A18-N22 PolarHBondContact O-ND2 3.24Å; V19-N22 PolarHBondContact O-N 2.81Å; E20-N22 PolarHBondContact O-N 2.9Å
23K47.8Very low52.8Low178 Ų178122.7 Ų122.777%0.77467%0.669SS**SBendtrans-93.70.9178.9-94-173.1176.3-171.10115E20E20-K23 PolarHBondContact O-N 2.94Å; E20-K23 VanDerWaalsContact O-N 3.11Å
24R47.8Very low51Low234 Ų234124.4 Ų124.488%0.88368%0.678SS**SBendtrans-134.947.5-179.9-65.9-67.2-170.7-179.61.1112.7
25A46.5Very low49.7Very low74 Ų74130.7 Ų130.761%0.61270%0.695SS**  trans-157.957.4171.200000113.6
26K43.7Very low48.6Very low219 Ų219129.3 Ų129.395%0.95270%0.695SS**SBendtrans-140.243.2153.9-81.9-157.3179.6-175.20111.5
27H46.1Very low47.8Very low151 Ų151136 Ų13670%0.69971%0.711SS**SBendtrans-132.9130.7155.8-159.3-109.8000105.3
28H46.4Very low47Very low165 Ų165136.6 Ų136.676%0.76472%0.722SS**  trans78.269.1-174.8-42.4-74.2000116.7G30H28-G30 VanDerWaalsContact C-N 3.3Å
29K40.4Very low46.8Very low195 Ų195137.4 Ų137.485%0.84872%0.724SS**  trans-100.468137.5-160.5169.8179.9-174.80108.3
30G38Very low47Very low68 Ų68140.5 Ų140.570%0.70173%0.732SS**  trans-64.4128.9160.600000108.9H28 K32H28-G30 VanDerWaalsContact C-N 3.3Å; G30-K32 PolarHBondContact O-N 3.11Å
31G41Very low47.7Very low73 Ų73135.2 Ų135.275%0.75371%0.71SS**  trans62.955.1140.900000116.8S33G31-S33 VanDerWaalsContact C-N 3.32Å
32K37.8Very low49Very low168 Ų168136.1 Ų136.173%0.7371%0.708SS**  trans-9188.8136.9-86.5179.6176.6173.20106.2G30 D34G30-K32 PolarHBondContact O-N 3.11Å; K32-D34 PolarHBondContact O-N 3.24Å
33S44.9Very low50.1Low106 Ų106133 Ų13374%0.74170%0.702SS**  trans-58.476.2149.155.20000106.7G31 K35G31-S33 VanDerWaalsContact C-N 3.32Å; S33-K35 PolarHBondContact O-N 3.23Å
34D40.5Very low51.5Low139 Ų139129.3 Ų129.374%0.74370%0.704SS**  trans-58.2103.2154-116.6-85.6000102.8K32 S36K32-D34 PolarHBondContact O-N 3.24Å; D34-S36 PolarHBondContact O-N 2.98Å
35K46.6Very low53.2Low186 Ų186122.1 Ų122.181%0.80968%0.68SS**  trans-46.3100.8164.9-79.2173.2162.178.80103.9S33 R37S33-K35 PolarHBondContact O-N 3.23Å; K35-R37 VanDerWaalsContact C-N 3.28Å; K35-R37 PolarHBondContact O-N 2.88Å
36S49.3Very low55.1Low77 Ų77119.2 Ų119.254%0.53866%0.655SS.*  trans-46.5108.8170.5-173.60000103.6D34D34-S36 PolarHBondContact O-N 2.98Å
37R51.8Low57.3Low218 Ų218115.8 Ų115.882%0.82364%0.643SS**  trans-34.5127.9177.8-177.4177.6175.5169.4-1.8106.6K35 S39K35-R37 VanDerWaalsContact C-N 3.28Å; K35-R37 PolarHBondContact O-N 2.88Å; R37-S39 VanDerWaalsContact C-N 3.32Å; R37-S39 PolarHBondContact O-N 2.81Å
38P46.7Very low59.4Low119 Ų119113.3 Ų113.377%0.77363%0.628SS**  trans-49.2104.5-170.519.5-31.6000107.4E40P38-E40 PolarHBondContact O-N 2.88Å
39S56.3Low61.5Low70 Ų70107.1 Ų107.149%0.4961%0.609SS.*  trans-59.7127.9-178.7-58.10000103.7R37 C41R37-S39 VanDerWaalsContact C-N 3.32Å; R37-S39 PolarHBondContact O-N 2.81Å; S39-C41 PolarHBondContact O-N 1.99Å
40E63Low63.8Low162 Ų162106.1 Ų106.176%0.75760%0.604SS**SBendtrans-63.210.8-178.3-56.9-171.789.300113P38 R70P38-E40 PolarHBondContact O-N 2.88Å; E40-R70 IonicContact OE2-NH1 3.24Å; E40-R70 PolarHBondContact OE2-NH1 2.82Å
41C68.6Low66.4Low29 Ų29104.8 Ų104.820%0.19658%0.584CS.*SBendtrans-122.9134.6-173.9-630000109.6S39 C67S39-C41 PolarHBondContact O-N 1.99Å; C41-C67 HydrophobicContact CB-CB 3.5Å; C41-C67 VanDerWaalsContact CB-CB 3.5Å; C41-C67 WeakPolarHBondContact CB-SG 3.48Å; C41-C67 WeakPolarHBondContact SG-CB 3.46Å; C41-C67 CovalentContact SG-SG 1.99Å; C41-C67 PolarHBondContact SG-SG 3.06Å
42T75.9Confident68.8Low91 Ų91105 Ų10556%0.55857%0.57SS**  trans-68.2154.4175.6-24.70000109.8A44 E45 T46T42-A44 PolarHBondContact O-N 2.72Å; T42-E45 WeakPolarHBondContact CB-OE2 3.49Å; T42-E45 PolarHBondContact N-OE2 2.87Å; T42-E45 PolarHBondContact O-N 2.69Å; T42-E45 PolarHBondContact OG1-OE2 3.19Å; T42-T46 PolarHBondContact O-N 2.77Å; T42-T46 PolarHBondContact O-OG1 2.73Å; T42-T46 VanDerWaalsContact O-OG1 3.07Å
43A73.2Confident71.4Confident72 Ų7298.8 Ų98.860%0.59555%0.547SS*.THydrogen-bonded Turntrans-56.8-25.3175.700000112.9
44A77.1Confident73.5Confident99 Ų9999 Ų9982%0.81854%0.54SS*.THydrogen-bonded Turntrans-75.7-27.3175.800000114.1T42T42-A44 PolarHBondContact O-N 2.72Å
45E83.6Confident75.7Confident83 Ų8399.5 Ų99.539%0.38854%0.538SS..THydrogen-bonded Turntrans-89.4-18.9179.4-64.9171.495.400112.2T42 K68T42-E45 WeakPolarHBondContact CB-OE2 3.49Å; T42-E45 PolarHBondContact N-OE2 2.87Å; T42-E45 PolarHBondContact O-N 2.69Å; T42-E45 PolarHBondContact OG1-OE2 3.19Å; E45-K68 IonicContact OE1-NZ 3.94Å
46T86.5Confident77.5Confident14 Ų1494.2 Ų94.29%0.08654%0.536CS..  trans-85.9116.4-176-54.10000110T42 Y48 A65T42-T46 PolarHBondContact O-N 2.77Å; T42-T46 PolarHBondContact O-OG1 2.73Å; T42-T46 VanDerWaalsContact O-OG1 3.07Å; T46-Y48 HydrophobicContact CG2-CD1 4.03Å; T46-Y48 HydrophobicContact CG2-CE1 3.54Å; T46-Y48 HydrophobicContact CG2-CE2 4.12Å; T46-Y48 WeakPolarHBondContact O-CD2 3.45Å; T46-Y48 PolarHBondContact O-N 2.76Å; T46-A65 HydrophobicContact CG2-CB 3.72Å
47Q90.1Very high79.2Confident147 Ų14797.5 Ų97.569%0.68755%0.548SS*.EExtended strand (participates in β ladder)trans-82.2110.8171.9-67.1-17787.700109.2T66Q47-T66 PolarHBondContact N-O 3.07Å; Q47-T66 PolarHBondContact O-N 3.41Å
48Y89.6Confident80.9Confident99 Ų9989.1 Ų89.139%0.38852%0.522SS..EExtended strand (participates in β ladder)trans-88.8123176.9-60.8-73.2000110.5T46 R63 E64 A65 I74T46-Y48 HydrophobicContact CG2-CD1 4.03Å; T46-Y48 HydrophobicContact CG2-CE1 3.54Å; T46-Y48 HydrophobicContact CG2-CE2 4.12Å; T46-Y48 WeakPolarHBondContact O-CD2 3.45Å; T46-Y48 PolarHBondContact O-N 2.76Å; Y48-R63 VanDerWaalsContact CD1-CZ 3.42Å; Y48-E64 CarbonylContact C-O 3.58Å; Y48-E64 WeakPolarHBondContact CA-O 3.37Å; Y48-A65 HydrophobicContact CD1-CB 3.93Å; Y48-A65 HydrophobicContact CE1-CB 3.96Å; Y48-I74 HydrophobicContact CD1-CD1 3.74Å; Y48-I74 HydrophobicContact CE1-CD1 3.43Å; Y48-I74 VanDerWaalsContact CE1-CD1 3.43Å
49G89.8Confident82.9Confident35 Ų3584.2 Ų84.236%0.36149%0.493SS..EExtended strand (participates in β ladder)trans-75.4-178169.900000112.8E64G49-E64 PolarHBondContact N-O 2.92Å
50K90.4Very high84.6Confident173 Ų17385.1 Ų85.175%0.75249%0.492SS*.EExtended strand (participates in β ladder)trans-63.8141.7176.670.3-164.9-174.5-161.50111.1V52 R63K50-V52 HydrophobicContact CG-CG2 4.08Å; K50-R63 WeakPolarHBondContact O-CB 3.29Å
51C91.1Very high86.1Confident41 Ų4177.4 Ų77.428%0.27746%0.456SS..EExtended strand (participates in β ladder)trans-80123.7171.3-1730000109.5R63 C76 I78C51-R63 HydrophobicContact CB-CB 4.39Å; C51-C76 WeakPolarHBondContact CA-SG 2.83Å; C51-C76 HydrophobicContact CB-CB 3.86Å; C51-C76 WeakPolarHBondContact CB-SG 2.93Å; C51-C76 WeakPolarHBondContact SG-CB 3.38Å; C51-C76 CovalentContact SG-SG 2Å; C51-C76 PolarHBondContact SG-SG 2.93Å; C51-I78 HydrophobicContact CB-CD1 4.39Å; C51-I78 HydrophobicContact CB-CG1 4.02Å; C51-I78 WeakPolarHBondContact O-CD1 2.94Å; C51-I78 WeakPolarHBondContact SG-CG1 2.98Å
52V92.5Very high87.2Confident76 Ų7679.3 Ų79.346%0.46146%0.464SS..EExtended strand (participates in β ladder)trans-109.2127.5179.1-1780000108.5K50 G61 L62K50-V52 HydrophobicContact CG-CG2 4.08Å; V52-G61 CarbonylContact O-C 3.56Å; V52-G61 WeakPolarHBondContact O-CA 3.42Å; V52-L62 PolarHBondContact N-O 2.89Å; V52-L62 PolarHBondContact O-N 2.96Å
53P92Very high88Confident38 Ų3878.9 Ų78.925%0.24745%0.452CS..EExtended strand (participates in β ladder)trans-65.7140.3-179.823.5-26.5000110.5G56 I78P53-G56 VanDerWaalsContact CG-O 3.25Å; P53-G56 WeakPolarHBondContact CG-O 3.49Å; P53-I78 HydrophobicContact CB-CD1 3.78Å; P53-I78 HydrophobicContact CG-CD1 3.89Å; P53-I78 VanDerWaalsContact N-CD1 3.34Å
54D89.6Confident88.9Confident110 Ų11080.4 Ų80.459%0.58845%0.447SS*.SBendtrans-69.3-39.7170.4176.8-105.1000110.5D60D54-D60 PolarHBondContact N-O 2.9Å
55Q84.9Confident89.5Confident151 Ų15176.1 Ų76.171%0.70641%0.411SS*.SBendtrans-140.1135.1-178.6-76.717086.200111.1
56G85.4Confident89.7Confident74 Ų7474.2 Ų74.276%0.76341%0.405SS*.SBendtrans70.3-153.5179.900000113.1P53P53-G56 VanDerWaalsContact CG-O 3.25Å; P53-G56 WeakPolarHBondContact CG-O 3.49Å
57D85.4Confident89.8Confident147 Ų14774 Ų7479%0.78641%0.405SS*.SBendtrans-100.3-14.1-178.5-164-110.4000112.6
58C87.8Confident89.6Confident41 Ų4175.3 Ų75.328%0.27741%0.408SS..SBendtrans-151.9162.7-174.472.50000111.3I78 C80C58-I78 HydrophobicContact CB-CG2 4.14Å; C58-C80 HydrophobicContact CB-CB 3.77Å; C58-C80 WeakPolarHBondContact CB-SG 3.48Å; C58-C80 WeakPolarHBondContact SG-CA 3.45Å; C58-C80 WeakPolarHBondContact SG-CB 3.44Å; C58-C80 CovalentContact SG-SG 2.03Å; C58-C80 PolarHBondContact SG-SG 2.74Å
59G88.2Confident89.4Confident16 Ų1678.1 Ų78.117%0.16543%0.43CS..EExtended strand (participates in β ladder)trans114.2-144-177.800000112.5R77 I78 C80G59-R77 CarbonylContact O-C 3.51Å; G59-R77 WeakPolarHBondContact O-CA 3.36Å; G59-I78 PolarHBondContact N-O 2.77Å; G59-I78 PolarHBondContact O-N 2.03Å; G59-C80 PolarHBondContact N-SG 2.8Å; G59-C80 VanDerWaalsContact N-SG 3.43Å
60D92.3Very high89.1Confident90 Ų9084.2 Ų84.248%0.48144%0.442SS..EExtended strand (participates in β ladder)trans-73.7146.1-180-155.9-98.8000111D54 H75D54-D60 PolarHBondContact N-O 2.9Å; D60-H75 IonicContact OD1-CD2 3.64Å
61G92.9Very high89.1Confident0 Ų079.6 Ų79.60%043%0.428CS..EExtended strand (participates in β ladder)trans-161.2179.5-174.800000112.6V52 H75 C76V52-G61 CarbonylContact O-C 3.56Å; V52-G61 WeakPolarHBondContact O-CA 3.42Å; G61-H75 CarbonylContact O-C 3.54Å; G61-H75 WeakPolarHBondContact O-CA 3Å; G61-C76 CarbonylContact C-O 3.58Å; G61-C76 VanDerWaalsContact C-SG 3.52Å; G61-C76 PolarHBondContact N-O 3.42Å; G61-C76 PolarHBondContact O-N 3.19Å; G61-C76 VanDerWaalsContact O-O 3.1Å
62L93Very high88.9Confident69 Ų6982 Ų8236%0.36144%0.438SS..EExtended strand (participates in β ladder)trans-121.5141.2176.9-68.3167.7000109.7V52 I74V52-L62 PolarHBondContact N-O 2.89Å; V52-L62 PolarHBondContact O-N 2.96Å; L62-I74 WeakPolarHBondContact CA-O 3Å
63R92.4Very high88.7Confident81 Ų8185.7 Ų85.731%0.30645%0.448SS..EExtended strand (participates in β ladder)trans-124.9148.2168.666.3-179.3-179.4170.56.2109.8Y48 K50 C51 K73 I74 C76Y48-R63 VanDerWaalsContact CD1-CZ 3.42Å; K50-R63 WeakPolarHBondContact O-CB 3.29Å; C51-R63 HydrophobicContact CB-CB 4.39Å; R63-K73 WeakPolarHBondContact O-CA 2.98Å; R63-I74 HydrophobicContact CG-CD1 4.11Å; R63-I74 HydrophobicContact CG-CG1 3.57Å; R63-I74 PolarHBondContact N-O 3.43Å; R63-I74 PolarHBondContact O-N 2Å; R63-C76 HydrophobicContact CB-CB 4.38Å; R63-C76 HydrophobicContact CG-CB 3.97Å; R63-C76 PolarHBondContact N-SG 2.92Å; R63-C76 VanDerWaalsContact N-SG 3.41Å
64E91.5Very high88.6Confident105 Ų10585.2 Ų85.249%0.49144%0.444SS..EExtended strand (participates in β ladder)trans-75.7138.2171.6-65.9175.8102.600109.2Y48 G49 T71 D72 K73Y48-E64 CarbonylContact C-O 3.58Å; Y48-E64 WeakPolarHBondContact CA-O 3.37Å; G49-E64 PolarHBondContact N-O 2.92Å; E64-T71 HydrophobicContact CB-CG2 4.21Å; E64-T71 HydrophobicContact CG-CG2 4.46Å; E64-D72 CarbonylContact C-O 3.45Å; E64-D72 WeakPolarHBondContact CA-O 3.41Å; E64-K73 HydrophobicContact CG-CG 4.4Å
65A89.8Confident88.6Confident8 Ų886.7 Ų86.77%0.06645%0.447CS..EExtended strand (participates in β ladder)trans-125103.5175.200000106.1T46 Y48 D72 I74T46-A65 HydrophobicContact CG2-CB 3.72Å; Y48-A65 HydrophobicContact CD1-CB 3.93Å; Y48-A65 HydrophobicContact CE1-CB 3.96Å; A65-D72 PolarHBondContact N-O 2.85Å; A65-D72 PolarHBondContact O-N 2.73Å; A65-I74 HydrophobicContact CB-CD1 3.98Å; A65-I74 HydrophobicContact CB-CG1 4.06Å; A65-I74 HydrophobicContact CB-CG2 4.21Å
66T89.4Confident88.9Confident43 Ų4380.4 Ų80.426%0.26442%0.419SS..EExtended strand (participates in β ladder)trans-99.1122.2177.9-57.90000109Q47 R70 T71Q47-T66 PolarHBondContact N-O 3.07Å; Q47-T66 PolarHBondContact O-N 3.41Å; T66-R70 CarbonylContact C-O 3.52Å; T66-R70 VanDerWaalsContact CA-O 3.29Å; T66-R70 WeakPolarHBondContact CA-O 3.25Å; T66-T71 WeakPolarHBondContact CG2-OG1 3.38Å; T66-T71 WeakPolarHBondContact OG1-CG2 3.42Å; T66-T71 PolarHBondContact OG1-OG1 3.47Å
67C87.8Confident89Confident11 Ų1186.8 Ų86.87%0.07442%0.42CS..EExtended strand (participates in β ladder)trans-126.4125.3169.7174.30000110C41 D69 R70C41-C67 HydrophobicContact CB-CB 3.5Å; C41-C67 VanDerWaalsContact CB-CB 3.5Å; C41-C67 WeakPolarHBondContact CB-SG 3.48Å; C41-C67 WeakPolarHBondContact SG-CB 3.46Å; C41-C67 CovalentContact SG-SG 1.99Å; C41-C67 PolarHBondContact SG-SG 3.06Å; C67-D69 PolarHBondContact O-N 2.99Å; C67-R70 PolarHBondContact N-O 2.85Å; C67-R70 PolarHBondContact O-N 2.61Å
68K84.9Confident89.3Confident173 Ų17381.4 Ų81.475%0.75239%0.391SS*.THydrogen-bonded Turntrans54.6-103.1-176.5-62.3171.9-177.7171.60109.9E45E45-K68 IonicContact OE1-NZ 3.94Å
69D86Confident89.2Confident159 Ų15985 Ų8585%0.8541%0.413SS*.THydrogen-bonded Turntrans-114.32.3-179.1-162.3-115.8000112.9C67C67-D69 PolarHBondContact O-N 2.99Å
70R84Confident89.1Confident162 Ų16286.7 Ų86.761%0.61142%0.422SS*.EExtended strand (participates in β ladder)trans-104.2128.2179.1-68.3-171.2178.9163.54.5110.6E40 T66 C67E40-R70 IonicContact OE2-NH1 3.24Å; E40-R70 PolarHBondContact OE2-NH1 2.82Å; T66-R70 CarbonylContact C-O 3.52Å; T66-R70 VanDerWaalsContact CA-O 3.29Å; T66-R70 WeakPolarHBondContact CA-O 3.25Å; C67-R70 PolarHBondContact N-O 2.85Å; C67-R70 PolarHBondContact O-N 2.61Å
71T89.4Confident88.3Confident77 Ų7787.9 Ų87.947%0.47243%0.429SS..EExtended strand (participates in β ladder)trans-112.2114.1170.5-58.60000109.1E64 T66E64-T71 HydrophobicContact CB-CG2 4.21Å; E64-T71 HydrophobicContact CG-CG2 4.46Å; T66-T71 WeakPolarHBondContact CG2-OG1 3.38Å; T66-T71 WeakPolarHBondContact OG1-CG2 3.42Å; T66-T71 PolarHBondContact OG1-OG1 3.47Å
72D87.4Confident87.1Confident91 Ų9198.4 Ų98.449%0.48747%0.469SS..EExtended strand (participates in β ladder)trans-109.9153.9176.8-71.1-77.8000110.4E64 A65E64-D72 CarbonylContact C-O 3.45Å; E64-D72 WeakPolarHBondContact CA-O 3.41Å; A65-D72 PolarHBondContact N-O 2.85Å; A65-D72 PolarHBondContact O-N 2.73Å
73K89.3Confident85.6Confident153 Ų153102.3 Ų102.367%0.66548%0.483SS*.EExtended strand (participates in β ladder)trans-101.9121171.7-68.2-176.2-179.5-177.70109.2R63 E64R63-K73 WeakPolarHBondContact O-CA 2.98Å; E64-K73 HydrophobicContact CG-CG 4.4Å
74I89.4Confident83.9Confident29 Ų29105.3 Ų105.315%0.14950%0.498CS..EExtended strand (participates in β ladder)trans-117150.4179.264.3168.8000110.7Y48 L62 R63 A65Y48-I74 HydrophobicContact CD1-CD1 3.74Å; Y48-I74 HydrophobicContact CE1-CD1 3.43Å; Y48-I74 VanDerWaalsContact CE1-CD1 3.43Å; L62-I74 WeakPolarHBondContact CA-O 3Å; R63-I74 HydrophobicContact CG-CD1 4.11Å; R63-I74 HydrophobicContact CG-CG1 3.57Å; R63-I74 PolarHBondContact N-O 3.43Å; R63-I74 PolarHBondContact O-N 2Å; A65-I74 HydrophobicContact CB-CD1 3.98Å; A65-I74 HydrophobicContact CB-CG1 4.06Å; A65-I74 HydrophobicContact CB-CG2 4.21Å
75H90Very high82.2Confident141 Ų141105.1 Ų105.165%0.65350%0.5SS*.EExtended strand (participates in β ladder)trans-68.7143.5177.6-65.785.1000111.2D60 G61D60-H75 IonicContact OD1-CD2 3.64Å; G61-H75 CarbonylContact O-C 3.54Å; G61-H75 WeakPolarHBondContact O-CA 3Å
76C89.9Confident80.7Confident18 Ų18112.5 Ų112.512%0.12254%0.537CS..EExtended strand (participates in β ladder)trans-146158.7176.856.70000109.5C51 G61 R63C51-C76 WeakPolarHBondContact CA-SG 2.83Å; C51-C76 HydrophobicContact CB-CB 3.86Å; C51-C76 WeakPolarHBondContact CB-SG 2.93Å; C51-C76 WeakPolarHBondContact SG-CB 3.38Å; C51-C76 CovalentContact SG-SG 2Å; C51-C76 PolarHBondContact SG-SG 2.93Å; G61-C76 CarbonylContact C-O 3.58Å; G61-C76 VanDerWaalsContact C-SG 3.52Å; G61-C76 PolarHBondContact N-O 3.42Å; G61-C76 PolarHBondContact O-N 3.19Å; G61-C76 VanDerWaalsContact O-O 3.1Å; R63-C76 HydrophobicContact CB-CB 4.38Å; R63-C76 HydrophobicContact CG-CB 3.97Å; R63-C76 PolarHBondContact N-SG 2.92Å; R63-C76 VanDerWaalsContact N-SG 3.41Å
77R89.2Confident79.1Confident208 Ų208115 Ų11579%0.78556%0.556SS**EExtended strand (participates in β ladder)trans-122.5118.2-178.1-169.3156.6176.4172.9-3.3110.7G59G59-R77 CarbonylContact O-C 3.51Å; G59-R77 WeakPolarHBondContact O-CA 3.36Å
78I90.5Very high77.5Confident34 Ų34122 Ų12217%0.17459%0.588CS.*EExtended strand (participates in β ladder)trans-84.6121.8177-57.8174.3000107.8C51 P53 C58 G59 C80C51-I78 HydrophobicContact CB-CD1 4.39Å; C51-I78 HydrophobicContact CB-CG1 4.02Å; C51-I78 WeakPolarHBondContact O-CD1 2.94Å; C51-I78 WeakPolarHBondContact SG-CG1 2.98Å; P53-I78 HydrophobicContact CB-CD1 3.78Å; P53-I78 HydrophobicContact CG-CD1 3.89Å; P53-I78 VanDerWaalsContact N-CD1 3.34Å; C58-I78 HydrophobicContact CB-CG2 4.14Å; G59-I78 PolarHBondContact N-O 2.77Å; G59-I78 PolarHBondContact O-N 2.03Å; I78-C80 PolarHBondContact O-N 3.18Å
79P86.2Confident76Confident116 Ų116119.7 Ų119.775%0.75359%0.588SS**PPolyproline II helixtrans-63.6120.8179.726.1-33000110N81P79-N81 PolarHBondContact O-N 3.48Å
80C86.5Confident74.3Confident52 Ų52122.9 Ų122.935%0.35159%0.588SS.*PPolyproline II helixtrans-77121.1172.6-72.90000110.3C58 G59 I78 W82C58-C80 HydrophobicContact CB-CB 3.77Å; C58-C80 WeakPolarHBondContact CB-SG 3.48Å; C58-C80 WeakPolarHBondContact SG-CA 3.45Å; C58-C80 WeakPolarHBondContact SG-CB 3.44Å; C58-C80 CovalentContact SG-SG 2.03Å; C58-C80 PolarHBondContact SG-SG 2.74Å; G59-C80 PolarHBondContact N-SG 2.8Å; G59-C80 VanDerWaalsContact N-SG 3.43Å; I78-C80 PolarHBondContact O-N 3.18Å; C80-W82 VanDerWaalsContact C-N 3.25Å; C80-W82 VanDerWaalsContact O-CD1 3.31Å; C80-W82 PolarHBondContact O-N 3.23Å
81N75.2Confident72.7Confident115 Ų115121.4 Ų121.462%0.61560%0.597SS**  trans-91.256.1171.7-167.976.5000110.5P79 K83 K84P79-N81 PolarHBondContact O-N 3.48Å; N81-K83 VanDerWaalsContact C-N 3.26Å; N81-K83 PolarHBondContact O-N 3.5Å; N81-K84 VanDerWaalsContact ND2-CB 3.25Å; N81-K84 WeakPolarHBondContact ND2-CB 3.26Å
82W67.3Low70.8Confident222 Ų222127.3 Ų127.384%0.84162%0.62SS**SBendtrans-80.7-9.4-179.361.7-74.6000113C80C80-W82 VanDerWaalsContact C-N 3.25Å; C80-W82 VanDerWaalsContact O-CD1 3.31Å; C80-W82 PolarHBondContact O-N 3.23Å
83K60.7Low69.1Low150 Ų150125.8 Ų125.865%0.65263%0.626SS**  trans-14368.6177.7-163.8167.3-176.6-177.80110.4N81 D85N81-K83 VanDerWaalsContact C-N 3.26Å; N81-K83 PolarHBondContact O-N 3.5Å; K83-D85 WeakPolarHBondContact CE-OD2 3.17Å; K83-D85 VanDerWaalsContact CG-OD2 3.26Å; K83-D85 WeakPolarHBondContact CG-OD2 3.25Å
84K57.2Low67.3Low144 Ų144123.6 Ų123.663%0.62663%0.629SS**  trans-90.892.5153.9-165.1130.9-174.9173.80105.2N81 I86N81-K84 VanDerWaalsContact ND2-CB 3.25Å; N81-K84 WeakPolarHBondContact ND2-CB 3.26Å; K84-I86 PolarHBondContact O-N 2.9Å
85D55.7Low65.2Low101 Ų101133.9 Ų133.954%0.5467%0.667SS.*  trans-49.6107.8165.7-84.4-102.1000106.7K83 S87K83-D85 WeakPolarHBondContact CE-OD2 3.17Å; K83-D85 VanDerWaalsContact CG-OD2 3.26Å; K83-D85 WeakPolarHBondContact CG-OD2 3.25Å; D85-S87 PolarHBondContact O-N 2.85Å
86I58.6Low63.4Low164 Ų164130.6 Ų130.684%0.84167%0.671SS**THydrogen-bonded Turntrans-65.420176.646.3170.8000112.3K84 E88K84-I86 PolarHBondContact O-N 2.9Å; I86-E88 PolarHBondContact O-N 3.17Å
87S55.7Low61Low94 Ų94142.4 Ų142.466%0.65772%0.724SS**THydrogen-bonded Turntrans-77.1-5.6-178.458.70000113.6D85 T89D85-S87 PolarHBondContact O-N 2.85Å; S87-T89 VanDerWaalsContact C-N 3.28Å; S87-T89 PolarHBondContact O-N 2.8Å
88E54.5Low59.6Low159 Ų159139.2 Ų139.274%0.74372%0.721SS**  trans-89.468.3170.9-61.3-166.896.800110.3I86 R90I86-E88 PolarHBondContact O-N 3.17Å; E88-R90 PolarHBondContact O-N 3.35Å
89T54.2Low58Low124 Ų124144.7 Ų144.776%0.76175%0.749SS**  trans-57.486.4146.232.70000107.3S87 T91S87-T89 VanDerWaalsContact C-N 3.28Å; S87-T89 PolarHBondContact O-N 2.8Å; T89-T91 PolarHBondContact O-N 2.92Å
90R48.7Very low56.4Low226 Ų226146.3 Ų146.385%0.85375%0.749SS**  trans-6789.9159.8-101.3-167.1-177.8-171.91.1106.2E88 Q92E88-R90 PolarHBondContact O-N 3.35Å; R90-Q92 VanDerWaalsContact C-N 3.3Å; R90-Q92 PolarHBondContact O-N 2.89Å
91T51.2Low54.7Low131 Ų131151.8 Ų151.880%0.80477%0.773SS**  trans-49103.3151.615.20000106.7T89 G93T89-T91 PolarHBondContact O-N 2.92Å; T91-G93 PolarHBondContact O-N 2.84Å
92Q50.3Low53.4Low201 Ų201154.1 Ų154.194%0.93978%0.782SS**  trans-73.776.2169.9-159.9152.55.800106.9R90R90-Q92 VanDerWaalsContact C-N 3.3Å; R90-Q92 PolarHBondContact O-N 2.89Å
93G50.5Low52.5Low60 Ų60149.6 Ų149.662%0.61978%0.779SS**  trans-111.491.817900000110.6T91T91-G93 PolarHBondContact O-N 2.84Å
94S52Low51.9Low106 Ų106149.6 Ų149.674%0.74179%0.788SS**  trans38.3109.1140.2-49.80000120.6
95R45.9Very low51.5Low246 Ų246150 Ų15093%0.92880%0.8SS**  158118.8129.3-94.1172-90.2179-10.5108.4
96G50.7Low51.1Low72 Ų72154.1 Ų154.174%0.74282%0.822SS**  cis72.958.215.700000112
97H41.2Very low50.4Low266 Ų266153.2 Ų153.2100%1.23182%0.82SS**  1750129.6-131.1-109.5000109.6

Retrieved 97 of 97 residues in 73.9 ms (Link to these results)