A0A096LNX2_HUMAN Loading...

Protocadherin beta 2

AlphaFold DB , UniProt , Accession A0A096LNX2, Species HUMAN (Homo sapiens, Human), Gene PCDHB2, Length 50 aa.

						>A0A096LNX2_HUMAN|A0A096LNX2|PCDHB2
MEAGEGKERVPKQRKYHSWNYFLNRTCPGLGCRNQQSPKLHNQSQFPLSS
					

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(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	42.5	Very low	52.4	Low	242 Å²	242	156.3 Å²	156.3	100%	1.192	85%	0.853	S	S	*	*				0	121.6	0	-72.6	170.8	176.9	0	0	105
2	E	45.4	Very low	53.3	Low	188 Å²	188	158.8 Å²	158.8	88%	0.879	85%	0.85	S	S	*	*			cis	-137.4	145.4	33	-63.2	-170.6	129.6	0	0	111.3	G4	E2-G4 PolarHBondContact O-N 3.03Å
3	A	45.4	Very low	54.2	Low	98 Å²	98	160.7 Å²	160.7	81%	0.81	85%	0.85	S	S	*	*	P	Polyproline II helix	trans	-74.9	121.4	172.3	0	0	0	0	0	108.1	E5	A3-E5 PolarHBondContact O-N 3.17Å; A3-E5 VanDerWaalsContact O-N 3.15Å
4	G	50.7	Low	54.8	Low	78 Å²	78	166.4 Å²	166.4	80%	0.804	85%	0.854	S	S	*	*	P	Polyproline II helix	trans	-51.3	119.1	179.2	0	0	0	0	0	111.4	E2 G6	E2-G4 PolarHBondContact O-N 3.03Å; G4-G6 PolarHBondContact O-N 3.1Å
5	E	46.4	Very low	55.3	Low	195 Å²	195	167.1 Å²	167.1	91%	0.911	85%	0.849	S	S	*	*	P	Polyproline II helix	trans	-51	120.7	-177.9	-91.1	172.6	84.5	0	0	111.5	A3	A3-E5 PolarHBondContact O-N 3.17Å; A3-E5 VanDerWaalsContact O-N 3.15Å
6	G	50.8	Low	55.8	Low	67 Å²	67	170.2 Å²	170.2	69%	0.691	85%	0.849	S	S	*	*	P	Polyproline II helix	trans	-59.5	136	-175.8	0	0	0	0	0	112.9	G4 E8	G4-G6 PolarHBondContact O-N 3.1Å; G6-E8 VanDerWaalsContact C-N 3.3Å; G6-E8 PolarHBondContact O-N 2.99Å
7	K	58.1	Low	56.1	Low	215 Å²	215	168.3 Å²	168.3	94%	0.935	84%	0.836	S	S	*	*			trans	-64.7	93.2	156.1	-68.7	-174	178.9	-177.3	0	108.4
8	E	54.2	Low	56.3	Low	169 Å²	169	162.5 Å²	162.5	79%	0.79	82%	0.815	S	S	*	*			trans	-134.9	86.9	172.4	-153.6	162.5	167.5	0	0	112.5	G6	G6-E8 VanDerWaalsContact C-N 3.3Å; G6-E8 PolarHBondContact O-N 2.99Å
9	R	60.2	Low	56.2	Low	221 Å²	221	167.1 Å²	167.1	83%	0.834	82%	0.822	S	S	*	*			trans	38.8	97.9	139.3	-60.7	175.8	178.8	170.9	0.2	115	P11	R9-P11 WeakPolarHBondContact O-CD 3.36Å
10	V	63.9	Low	56.2	Low	134 Å²	134	166.2 Å²	166.2	81%	0.812	82%	0.82	S	S	*	*			trans	-44.7	111.5	155.8	-177.1	0	0	0	0	108.1	K12	V10-K12 VanDerWaalsContact C-N 3.26Å; V10-K12 PolarHBondContact O-N 2.78Å
11	P	58.6	Low	56.3	Low	112 Å²	112	166 Å²	166	73%	0.727	81%	0.812	S	S	*	*			trans	-71.7	99.3	164.5	11.5	2	0	0	0	104.1	R9 Q13	R9-P11 WeakPolarHBondContact O-CD 3.36Å; P11-Q13 VanDerWaalsContact C-N 3.32Å; P11-Q13 PolarHBondContact O-N 3.08Å
12	K	63.8	Low	56.8	Low	187 Å²	187	160.2 Å²	160.2	81%	0.813	78%	0.78	S	S	*	*			trans	-41.7	106.6	161.8	-101.3	176.5	176.8	172.7	0	105	V10 R14	V10-K12 VanDerWaalsContact C-N 3.26Å; V10-K12 PolarHBondContact O-N 2.78Å; K12-R14 VanDerWaalsContact C-N 3.35Å; K12-R14 PolarHBondContact O-N 3.4Å
13	Q	64.3	Low	57.2	Low	183 Å²	183	158.4 Å²	158.4	86%	0.855	78%	0.775	S	S	*	*			trans	-51	108.2	179.3	-76.7	-179.7	-34.6	0	0	105.6	P11 K15	P11-Q13 VanDerWaalsContact C-N 3.32Å; P11-Q13 PolarHBondContact O-N 3.08Å; Q13-K15 VanDerWaalsContact C-N 3.28Å; Q13-K15 PolarHBondContact O-N 2.87Å
14	R	62.5	Low	57.8	Low	241 Å²	241	160.3 Å²	160.3	91%	0.909	77%	0.772	S	S	*	*			trans	-60.8	103.7	175.4	-77.3	178.9	175.4	176.4	-1.8	103.3	K12 Y16	K12-R14 VanDerWaalsContact C-N 3.35Å; K12-R14 PolarHBondContact O-N 3.4Å; R14-Y16 PolarHBondContact O-N 2.78Å
15	K	62.7	Low	57.9	Low	177 Å²	177	164.7 Å²	164.7	77%	0.77	76%	0.764	S	S	*	*			trans	-55.3	99	171.5	-75.1	-178.3	177.5	-178.8	0	105	Q13 H17	Q13-K15 VanDerWaalsContact C-N 3.28Å; Q13-K15 PolarHBondContact O-N 2.87Å; K15-H17 PolarHBondContact O-N 2.9Å; K15-H17 PolarHBondContact O-ND1 2.86Å
16	Y	63.3	Low	58.6	Low	216 Å²	216	161 Å²	161	85%	0.847	76%	0.755	S	S	*	*			trans	-65.6	91.3	173.7	-156.5	-94.1	0	0	0	104.3	R14 S18	R14-Y16 PolarHBondContact O-N 2.78Å; Y16-S18 PolarHBondContact O-N 2.92Å
17	H	61	Low	58.9	Low	138 Å²	138	162.8 Å²	162.8	64%	0.639	76%	0.756	S	S	*	*			trans	-69.5	95	171.2	-76.1	56.2	0	0	0	103.5	K15 W19	K15-H17 PolarHBondContact O-N 2.9Å; K15-H17 PolarHBondContact O-ND1 2.86Å; H17-W19 PolarHBondContact O-N 2.87Å
18	S	58.8	Low	58.9	Low	64 Å²	64	159 Å²	159	45%	0.448	75%	0.753	S	S	.	*			trans	-53.4	130.7	170.3	65.2	0	0	0	0	106.3	Y16 N20 Y21	Y16-S18 PolarHBondContact O-N 2.92Å; S18-N20 PolarHBondContact O-N 2.77Å; S18-Y21 PolarHBondContact O-N 2.99Å
19	W	56.1	Low	59	Low	250 Å²	250	153.7 Å²	153.7	95%	0.947	74%	0.744	S	S	*	*	T	Hydrogen-bonded Turn	trans	-60.9	10.7	173.8	-98.5	19.5	0	0	0	113.7	H17	H17-W19 PolarHBondContact O-N 2.87Å
20	N	56	Low	59	Low	148 Å²	148	151.1 Å²	151.1	79%	0.791	75%	0.746	S	S	*	*	T	Hydrogen-bonded Turn	trans	-97.5	13.7	169.1	-79.1	-24.7	0	0	0	112.7	S18 F22	S18-N20 PolarHBondContact O-N 2.77Å; N20-F22 PolarHBondContact O-N 2.71Å
21	Y	56.9	Low	58.8	Low	164 Å²	164	147.8 Å²	147.8	64%	0.643	74%	0.739	S	S	*	*	S	Bend	trans	-71.8	78.1	165.7	-165.4	-97.2	0	0	0	109.6	S18	S18-Y21 PolarHBondContact O-N 2.99Å
22	F	53.9	Low	58.8	Low	120 Å²	120	147.5 Å²	147.5	53%	0.526	74%	0.738	S	S	.	*			trans	58.7	63.7	158.3	-65.2	-88.5	0	0	0	115.2	N20 N24 R25	N20-F22 PolarHBondContact O-N 2.71Å; F22-N24 PolarHBondContact O-N 2.92Å; F22-R25 HydrophobicContact CG-CG 4.09Å; F22-R25 HydrophobicContact CE1-CG 4.4Å; F22-R25 HydrophobicContact CB-CG 4.1Å; F22-R25 HydrophobicContact CD1-CG 3.67Å
23	L	54.5	Low	58.5	Low	149 Å²	149	149 Å²	149	78%	0.78	74%	0.739	S	S	*	*	T	Hydrogen-bonded Turn	trans	-49.4	110.8	141.7	-114.6	92.1	0	0	0	106.8
24	N	57	Low	58.3	Low	138 Å²	138	147.2 Å²	147.2	74%	0.738	73%	0.734	S	S	*	*	T	Hydrogen-bonded Turn	trans	65.3	63.2	169.9	-53.1	-60.6	0	0	0	114.9	F22 T26	F22-N24 PolarHBondContact O-N 2.92Å; N24-T26 PolarHBondContact O-N 2.79Å
25	R	53.6	Low	58.2	Low	171 Å²	171	144.6 Å²	144.6	65%	0.645	73%	0.733	S	S	*	*			trans	-55.7	102.1	138.2	-88	-179.9	175.4	-169	-3.2	106.2	F22	F22-R25 HydrophobicContact CG-CG 4.09Å; F22-R25 HydrophobicContact CE1-CG 4.4Å; F22-R25 HydrophobicContact CB-CG 4.1Å; F22-R25 HydrophobicContact CD1-CG 3.67Å
26	T	61.5	Low	57.9	Low	118 Å²	118	144.3 Å²	144.3	72%	0.724	73%	0.734	S	S	*	*			trans	5.5	118.2	160.8	1.3	0	0	0	0	113.6	N24 P28	N24-T26 PolarHBondContact O-N 2.79Å; T26-P28 WeakPolarHBondContact O-CD 2.86Å
27	C	57.2	Low	58	Low	103 Å²	103	138.9 Å²	138.9	70%	0.696	73%	0.727	S	S	*	*			trans	-56.2	107.2	158.5	-63.4	0	0	0	0	106.6	G29	C27-G29 PolarHBondContact O-N 3.23Å
28	P	57.2	Low	57.7	Low	136 Å²	136	137.9 Å²	137.9	88%	0.883	73%	0.734	S	S	*	*	S	Bend	trans	-80.7	87.6	178.2	21.5	-5.8	0	0	0	105.2	T26	T26-P28 WeakPolarHBondContact O-CD 2.86Å
29	G	57	Low	57.7	Low	57 Å²	57	144.4 Å²	144.4	59%	0.588	75%	0.754	S	S	*	*	S	Bend	trans	132	88.9	-166.2	0	0	0	0	0	108.1	C27 G31	C27-G29 PolarHBondContact O-N 3.23Å; G29-G31 PolarHBondContact O-N 2.82Å
30	L	59.2	Low	57.8	Low	168 Å²	168	140.8 Å²	140.8	88%	0.88	75%	0.752	S	S	*	*			trans	-54.5	85.3	171.9	-80.3	155.2	0	0	0	110.2
31	G	59.2	Low	58	Low	64 Å²	64	141.1 Å²	141.1	66%	0.66	75%	0.748	S	S	*	*			trans	-111.3	50.3	157.4	0	0	0	0	0	108	G29 R33	G29-G31 PolarHBondContact O-N 2.82Å; G31-R33 PolarHBondContact O-N 2.93Å
32	C	60	Low	58.3	Low	105 Å²	105	139.9 Å²	139.9	71%	0.709	75%	0.753	S	S	*	*			trans	-60.2	94.3	163	-75.6	0	0	0	0	105.9	N34	C32-N34 PolarHBondContact O-N 2.78Å
33	R	57.3	Low	58.7	Low	220 Å²	220	142.7 Å²	142.7	83%	0.83	77%	0.768	S	S	*	*			trans	-51.2	108.3	-179.9	-176.1	173.3	176.1	178.5	-1.9	106.6	G31 Q35	G31-R33 PolarHBondContact O-N 2.93Å; R33-Q35 PolarHBondContact O-N 2.88Å
34	N	59.5	Low	59	Low	144 Å²	144	138.9 Å²	138.9	77%	0.77	75%	0.754	S	S	*	*			trans	-38.7	111.6	172.9	-74.2	-62.1	0	0	0	107.4	C32 Q36	C32-N34 PolarHBondContact O-N 2.78Å; N34-Q36 VanDerWaalsContact C-N 3.27Å; N34-Q36 PolarHBondContact O-N 3.05Å
35	Q	61.2	Low	59.4	Low	187 Å²	187	140.8 Å²	140.8	87%	0.874	76%	0.758	S	S	*	*			trans	-55.6	107.2	163.5	-70.4	-177	14.5	0	0	103.7	R33 S37	R33-Q35 PolarHBondContact O-N 2.88Å; Q35-S37 VanDerWaalsContact C-N 3.27Å; Q35-S37 PolarHBondContact O-N 2.91Å
36	Q	56.3	Low	60.1	Low	171 Å²	171	140.3 Å²	140.3	80%	0.799	76%	0.761	S	S	*	*			trans	-61.7	99.5	-178.9	-73.6	173.9	6.4	0	0	105.5	N34	N34-Q36 VanDerWaalsContact C-N 3.27Å; N34-Q36 PolarHBondContact O-N 3.05Å
37	S	64.4	Low	60.2	Low	101 Å²	101	139.8 Å²	139.8	71%	0.706	76%	0.759	S	S	*	*			trans	-46.6	132.7	156.3	-78.4	0	0	0	0	106.3	Q35 K39	Q35-S37 VanDerWaalsContact C-N 3.27Å; Q35-S37 PolarHBondContact O-N 2.91Å; S37-K39 PolarHBondContact O-N 2.9Å
38	P	55	Low	60.5	Low	118 Å²	118	143.3 Å²	143.3	77%	0.766	77%	0.771	S	S	*	*			trans	-56.3	116.3	175.1	22.4	-29.5	0	0	0	106.7	L40	P38-L40 PolarHBondContact O-N 2.74Å
39	K	58.4	Low	60.8	Low	200 Å²	200	142 Å²	142	87%	0.87	77%	0.765	S	S	*	*			trans	-54.7	105.4	174.1	-77.1	176.3	176.9	174.7	0	106.4	S37 H41	S37-K39 PolarHBondContact O-N 2.9Å; K39-H41 PolarHBondContact O-N 2.77Å
40	L	58.6	Low	60.5	Low	174 Å²	174	148.7 Å²	148.7	91%	0.911	80%	0.802	S	S	*	*			trans	-67.8	75.6	159.8	-83.1	166.4	0	0	0	106.9	P38 N42	P38-L40 PolarHBondContact O-N 2.74Å; L40-N42 VanDerWaalsContact C-N 3.3Å; L40-N42 PolarHBondContact O-N 2.79Å; L40-N42 VanDerWaalsContact O-N 3.08Å
41	H	60.8	Low	60.6	Low	155 Å²	155	147.7 Å²	147.7	72%	0.718	80%	0.798	S	S	*	*			trans	-69.2	96	161	162.7	25.9	0	0	0	106.3	K39	K39-H41 PolarHBondContact O-N 2.77Å
42	N	61.7	Low	60.7	Low	139 Å²	139	152.1 Å²	152.1	74%	0.743	81%	0.806	S	S	*	*			trans	-161.8	59.5	151.4	-100	-57.5	0	0	0	108.6	L40 S44	L40-N42 VanDerWaalsContact C-N 3.3Å; L40-N42 PolarHBondContact O-N 2.79Å; L40-N42 VanDerWaalsContact O-N 3.08Å; N42-S44 PolarHBondContact O-N 2.81Å; N42-S44 VanDerWaalsContact O-N 3.1Å
43	Q	63.1	Low	60.7	Low	178 Å²	178	154.7 Å²	154.7	83%	0.832	81%	0.811	S	S	*	*			trans	-72.9	84.9	153.2	-73.5	-81.5	44.3	0	0	106.5	Q45	Q43-Q45 PolarHBondContact O-N 3.24Å
44	S	61.6	Low	60.9	Low	69 Å²	69	150.9 Å²	150.9	48%	0.483	81%	0.81	S	S	.	*			trans	-88.3	88.3	159.2	-165.3	0	0	0	0	107.5	N42 F46	N42-S44 PolarHBondContact O-N 2.81Å; N42-S44 VanDerWaalsContact O-N 3.1Å; S44-F46 PolarHBondContact O-N 2.95Å; S44-F46 WeakPolarHBondContact OG-CD2 3.17Å; S44-F46 WeakPolarHBondContact OG-CE2 3.45Å; S44-F46 WeakPolarHBondContact OG-CZ 3Å
45	Q	65.1	Low	61	Low	178 Å²	178	151.3 Å²	151.3	83%	0.832	81%	0.812	S	S	*	*			trans	-72.5	81.3	168	-174.3	172.2	-0.6	0	0	107.7	Q43 P47	Q43-Q45 PolarHBondContact O-N 3.24Å; Q45-P47 WeakPolarHBondContact O-CD 3.13Å
46	F	67.3	Low	61	Low	162 Å²	162	148.9 Å²	148.9	71%	0.711	81%	0.808	S	S	*	*			trans	-76.8	122.2	163.5	-71.4	-73.4	0	0	0	107.9	S44 L48	S44-F46 PolarHBondContact O-N 2.95Å; S44-F46 WeakPolarHBondContact OG-CD2 3.17Å; S44-F46 WeakPolarHBondContact OG-CE2 3.45Å; S44-F46 WeakPolarHBondContact OG-CZ 3Å; F46-L48 PolarHBondContact O-N 3.49Å
47	P	64	Low	61.3	Low	106 Å²	106	147.4 Å²	147.4	69%	0.688	81%	0.809	S	S	*	*			trans	-70.5	110.4	163.8	28.7	-28.3	0	0	0	106.9	Q45 S49	Q45-P47 WeakPolarHBondContact O-CD 3.13Å; P47-S49 PolarHBondContact O-N 3.15Å
48	L	64.6	Low	61.1	Low	178 Å²	178	150.9 Å²	150.9	93%	0.932	82%	0.817	S	S	*	*			trans	-63.9	110.6	162.6	-69.2	175.6	0	0	0	106.2	F46	F46-L48 PolarHBondContact O-N 3.49Å
49	S	61.8	Low	61.6	Low	108 Å²	108	153.7 Å²	153.7	76%	0.755	82%	0.821	S	S	*	*			trans	-95.3	147.9	-179.4	26.4	0	0	0	0	109.6	P47	P47-S49 PolarHBondContact O-N 3.15Å
50	S	52.4	Low	61.9	Low	197 Å²	197	149.5 Å²	149.5	100%	1.378	82%	0.817	S	S	*	*			trans	71.4	0	175.3	173.4	0	0	0	0	116.5

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