A0A096LP37_HUMAN Loading...

Protocadherin beta 2

AlphaFold DB , UniProt , Accession A0A096LP37, Species HUMAN (Homo sapiens, Human), Gene PCDHB2, Length 36 aa.

						>A0A096LP37_HUMAN|A0A096LP37|PCDHB2
MEAGEGKERVPKQRQSRWHNITTAGAEQSPGSRGAA
					

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(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	39.7	Very low	55.8	Low	247 Å²	247	135.6 Å²	135.6	100%	1.217	74%	0.738	S	S	*	*				0	116.5	0	-161.9	161.3	179.2	0	0	106.2	A3	M1-A3 PolarHBondContact O-N 2.82Å
2	E	43.8	Very low	56.3	Low	188 Å²	188	139 Å²	139	88%	0.879	74%	0.741	S	S	*	*			trans	-56.9	129.5	-175	-166.2	177.1	101.7	0	0	110	G4	E2-G4 PolarHBondContact O-N 3.45Å
3	A	51.9	Low	56.5	Low	102 Å²	102	140.8 Å²	140.8	84%	0.843	74%	0.742	S	S	*	*			trans	-72.8	76.9	173.5	0	0	0	0	0	108.2	M1 E5	M1-A3 PolarHBondContact O-N 2.82Å; A3-E5 VanDerWaalsContact O-N 3.17Å; A3-E5 PolarHBondContact O-N 2.85Å
4	G	54.3	Low	56.8	Low	58 Å²	58	141.9 Å²	141.9	60%	0.598	73%	0.731	S	S	*	*			trans	-56.3	119.4	175.7	0	0	0	0	0	109.5	E2 G6	E2-G4 PolarHBondContact O-N 3.45Å; G4-G6 PolarHBondContact O-N 2.78Å
5	E	52.8	Low	57.1	Low	151 Å²	151	139.1 Å²	139.1	71%	0.706	71%	0.713	S	S	*	*			trans	-17.5	109.5	173.2	-71	-177.6	96	0	0	114.1	A3 K7	A3-E5 VanDerWaalsContact O-N 3.17Å; A3-E5 PolarHBondContact O-N 2.85Å; E5-K7 PolarHBondContact O-N 3.19Å; E5-K7 IonicContact OE2-NZ 2.86Å; E5-K7 PolarHBondContact OE2-NZ 3.17Å
6	G	58.8	Low	57.3	Low	82 Å²	82	134.4 Å²	134.4	85%	0.845	70%	0.697	S	S	*	*			trans	-66.4	71.2	160.6	0	0	0	0	0	110.3	G4 E8	G4-G6 PolarHBondContact O-N 2.78Å; G6-E8 PolarHBondContact O-N 2.89Å
7	K	62.8	Low	57.4	Low	146 Å²	146	136.9 Å²	136.9	64%	0.635	70%	0.695	S	S	*	*			trans	-68.2	85.3	157.3	29.4	-175.6	161.6	-70.9	0	105.6	E5 R9	E5-K7 PolarHBondContact O-N 3.19Å; E5-K7 IonicContact OE2-NZ 2.86Å; E5-K7 PolarHBondContact OE2-NZ 3.17Å; K7-R9 PolarHBondContact O-N 2.7Å
8	E	59.4	Low	57.5	Low	160 Å²	160	139 Å²	139	75%	0.748	69%	0.693	S	S	*	*			trans	-41.8	108.5	167.3	-176.5	178.8	103.3	0	0	106.1	G6 V10	G6-E8 PolarHBondContact O-N 2.89Å; E8-V10 PolarHBondContact O-N 2.88Å
9	R	63.2	Low	57.7	Low	239 Å²	239	138.1 Å²	138.1	90%	0.902	69%	0.686	S	S	*	*			trans	-69.2	77.6	175.6	-72	175.3	140.2	-173	-4	105.6	K7 P11	K7-R9 PolarHBondContact O-N 2.7Å; R9-P11 WeakPolarHBondContact O-CD 3.33Å
10	V	63.2	Low	57.8	Low	52 Å²	52	136.5 Å²	136.5	32%	0.315	68%	0.681	S	S	.	*			trans	-48.6	117.7	166	178.3	0	0	0	0	103.9	E8 K12 R14 Q15	E8-V10 PolarHBondContact O-N 2.88Å; V10-K12 PolarHBondContact O-N 2.86Å; V10-R14 HydrophobicContact CG1-CB 4.49Å; V10-Q15 HydrophobicContact CG1-CG 4.12Å
11	P	63.7	Low	57.9	Low	67 Å²	67	134.6 Å²	134.6	44%	0.435	67%	0.672	S	S	.	*			trans	-57.2	117.4	-176.1	18.6	-28.9	0	0	0	105.9	R9 Q13 R14	R9-P11 WeakPolarHBondContact O-CD 3.33Å; P11-Q13 CarbonylContact O-C 3.59Å; P11-Q13 PolarHBondContact O-N 3.4Å; P11-R14 PolarHBondContact O-N 3.44Å; P11-R14 HydrophobicContact CG-CG 4.03Å
12	K	61.7	Low	58.8	Low	176 Å²	176	127.7 Å²	127.7	77%	0.765	64%	0.643	S	S	*	*	H	α-helix	trans	-43.2	-30.8	-179.2	-107	169.2	169.7	177.6	0	111.9	V10 R14 Q15 S16	V10-K12 PolarHBondContact O-N 2.86Å; K12-R14 PolarHBondContact O-N 3.2Å; K12-Q15 PolarHBondContact O-N 3.33Å; K12-S16 PolarHBondContact O-N 3.23Å; K12-S16 PolarHBondContact O-OG 2.97Å; K12-S16 VanDerWaalsContact O-OG 3.14Å
13	Q	59.9	Low	59.5	Low	163 Å²	163	122.5 Å²	122.5	76%	0.762	63%	0.625	S	S	*	*	H	α-helix	trans	-54.2	-41.7	172.8	-161.9	179.8	12.2	0	0	115	P11 R17	P11-Q13 CarbonylContact O-C 3.59Å; P11-Q13 PolarHBondContact O-N 3.4Å; Q13-R17 PolarHBondContact O-N 3.22Å
14	R	60.5	Low	59.9	Low	156 Å²	156	120.4 Å²	120.4	59%	0.589	61%	0.607	S	S	*	*	H	α-helix	trans	-65.8	-45.7	176	-75.9	178.5	80.5	-160.1	4.1	110.2	V10 P11 K12 R17 W18	V10-R14 HydrophobicContact CG1-CB 4.49Å; P11-R14 PolarHBondContact O-N 3.44Å; P11-R14 HydrophobicContact CG-CG 4.03Å; K12-R14 PolarHBondContact O-N 3.2Å; R14-R17 PolarHBondContact O-N 2.76Å; R14-W18 PolarHBondContact O-N 2.84Å
15	Q	60.6	Low	60	Low	99 Å²	99	119.9 Å²	119.9	46%	0.463	60%	0.602	S	S	.	*	H	α-helix	trans	-61.9	-46.5	178.5	-71.2	-178.6	-6.8	0	0	111.7	V10 K12 R17 W18 H19	V10-Q15 HydrophobicContact CG1-CG 4.12Å; K12-Q15 PolarHBondContact O-N 3.33Å; Q15-R17 VanDerWaalsContact C-N 3.28Å; Q15-R17 PolarHBondContact O-N 3.42Å; Q15-W18 PolarHBondContact O-N 2.73Å; Q15-H19 PolarHBondContact O-N 3.36Å; Q15-H19 VanDerWaalsContact O-N 3.15Å; Q15-H19 PolarHBondContact O-ND1 3.28Å
16	S	60.5	Low	60.3	Low	64 Å²	64	116.1 Å²	116.1	45%	0.448	60%	0.597	S	S	.	*	H	α-helix	trans	-58	-39.1	178.2	-57.1	0	0	0	0	112.7	K12 W18 H19 N20	K12-S16 PolarHBondContact O-N 3.23Å; K12-S16 PolarHBondContact O-OG 2.97Å; K12-S16 VanDerWaalsContact O-OG 3.14Å; S16-W18 PolarHBondContact O-N 3.21Å; S16-H19 PolarHBondContact O-N 3.09Å; S16-N20 PolarHBondContact O-N 3.26Å; S16-N20 PolarHBondContact O-ND2 3.01Å
17	R	59.1	Low	60.2	Low	178 Å²	178	119.9 Å²	119.9	67%	0.672	59%	0.593	S	S	*	*	H	α-helix	trans	-62.7	-40.8	179.1	-168.3	174.7	-176.8	-108.4	3.2	112.5	Q13 R14 Q15 I21	Q13-R17 PolarHBondContact O-N 3.22Å; R14-R17 PolarHBondContact O-N 2.76Å; Q15-R17 VanDerWaalsContact C-N 3.28Å; Q15-R17 PolarHBondContact O-N 3.42Å; R17-I21 HydrophobicContact CG-CD1 4.32Å; R17-I21 WeakPolarHBondContact O-CD1 3.29Å; R17-I21 VanDerWaalsContact O-CG1 3.29Å; R17-I21 WeakPolarHBondContact O-CG1 3.43Å; R17-I21 PolarHBondContact O-N 3.18Å
18	W	59.3	Low	59.9	Low	174 Å²	174	120.8 Å²	120.8	66%	0.659	60%	0.599	S	S	*	*	H	α-helix	trans	-68.6	-41.6	176.8	-69.5	100.5	0	0	0	112.1	R14 Q15 S16 N20 I21 T22	R14-W18 PolarHBondContact O-N 2.84Å; Q15-W18 PolarHBondContact O-N 2.73Å; S16-W18 PolarHBondContact O-N 3.21Å; W18-N20 VanDerWaalsContact C-N 3.32Å; W18-N20 PolarHBondContact O-N 3.5Å; W18-I21 PolarHBondContact O-N 3.09Å; W18-T22 PolarHBondContact O-N 2.96Å; W18-T22 VanDerWaalsContact O-N 3.09Å; W18-T22 PolarHBondContact O-OG1 3.07Å; W18-T22 VanDerWaalsContact O-OG1 3.09Å
19	H	61.4	Low	59.8	Low	121 Å²	121	117.1 Å²	117.1	56%	0.56	59%	0.591	S	S	*	*	H	α-helix	trans	-62.3	-39.6	177.6	-70.4	80.1	0	0	0	112.1	Q15 S16 T22 T23	Q15-H19 PolarHBondContact O-N 3.36Å; Q15-H19 VanDerWaalsContact O-N 3.15Å; Q15-H19 PolarHBondContact O-ND1 3.28Å; S16-H19 PolarHBondContact O-N 3.09Å; H19-T22 PolarHBondContact O-N 3.03Å; H19-T23 PolarHBondContact O-N 3.15Å; H19-T23 PolarHBondContact O-OG1 3.16Å
20	N	59	Low	59.5	Low	107 Å²	107	112.1 Å²	112.1	57%	0.572	59%	0.589	S	S	*	*	H	α-helix	trans	-68.9	-32.9	178.5	-67.1	-36.9	0	0	0	112.8	S16 W18 A24	S16-N20 PolarHBondContact O-N 3.26Å; S16-N20 PolarHBondContact O-ND2 3.01Å; W18-N20 VanDerWaalsContact C-N 3.32Å; W18-N20 PolarHBondContact O-N 3.5Å; N20-A24 WeakPolarHBondContact O-CB 3.11Å; N20-A24 PolarHBondContact O-N 3.26Å
21	I	60.2	Low	59.4	Low	97 Å²	97	112.6 Å²	112.6	50%	0.497	61%	0.605	S	S	.	*	H	α-helix	trans	-68.5	-42.4	174.7	-66.4	163.7	0	0	0	110.3	R17 W18 T23 G25	R17-I21 HydrophobicContact CG-CD1 4.32Å; R17-I21 WeakPolarHBondContact O-CD1 3.29Å; R17-I21 VanDerWaalsContact O-CG1 3.29Å; R17-I21 WeakPolarHBondContact O-CG1 3.43Å; R17-I21 PolarHBondContact O-N 3.18Å; W18-I21 PolarHBondContact O-N 3.09Å; I21-T23 PolarHBondContact O-N 3.14Å; I21-G25 PolarHBondContact O-N 3.41Å; I21-G25 VanDerWaalsContact O-N 3.16Å
22	T	58.5	Low	59	Low	101 Å²	101	115 Å²	115	62%	0.62	62%	0.623	S	S	*	*	H	α-helix	trans	-63.3	-41.2	178.7	-55.7	0	0	0	0	111.9	W18 H19 A26	W18-T22 PolarHBondContact O-N 2.96Å; W18-T22 VanDerWaalsContact O-N 3.09Å; W18-T22 PolarHBondContact O-OG1 3.07Å; W18-T22 VanDerWaalsContact O-OG1 3.09Å; H19-T22 PolarHBondContact O-N 3.03Å; T22-A26 WeakPolarHBondContact O-CB 3.34Å; T22-A26 PolarHBondContact O-N 3.35Å
23	T	57.8	Low	59	Low	79 Å²	79	118.4 Å²	118.4	49%	0.485	63%	0.631	S	S	.	*	H	α-helix	trans	-74	-44.4	178.6	-54.3	0	0	0	0	112.4	H19 I21 G25 A26 E27	H19-T23 PolarHBondContact O-N 3.15Å; H19-T23 PolarHBondContact O-OG1 3.16Å; I21-T23 PolarHBondContact O-N 3.14Å; T23-G25 PolarHBondContact O-N 3.42Å; T23-A26 PolarHBondContact O-N 3.49Å; T23-E27 PolarHBondContact O-N 3.23Å
24	A	60.3	Low	58.8	Low	58 Å²	58	114 Å²	114	48%	0.479	63%	0.631	S	S	.	*	H	α-helix	trans	-64.9	-26.2	-179.1	0	0	0	0	0	113.6	N20	N20-A24 WeakPolarHBondContact O-CB 3.11Å; N20-A24 PolarHBondContact O-N 3.26Å
25	G	57.8	Low	58.2	Low	48 Å²	48	111.2 Å²	111.2	50%	0.495	64%	0.641	S	S	.	*	H	α-helix	trans	-85.3	-24.7	172.1	0	0	0	0	0	114.3	I21 T23 Q28	I21-G25 PolarHBondContact O-N 3.41Å; I21-G25 VanDerWaalsContact O-N 3.16Å; T23-G25 PolarHBondContact O-N 3.42Å; G25-Q28 PolarHBondContact O-N 3.07Å
26	A	58.3	Low	57.5	Low	72 Å²	72	115 Å²	115	60%	0.595	69%	0.688	S	S	*	*	H	α-helix	trans	-73.7	-32.8	178.5	0	0	0	0	0	112.4	T22 T23 Q28	T22-A26 WeakPolarHBondContact O-CB 3.34Å; T22-A26 PolarHBondContact O-N 3.35Å; T23-A26 PolarHBondContact O-N 3.49Å; A26-Q28 VanDerWaalsContact C-N 3.26Å; A26-Q28 PolarHBondContact O-N 3.24Å
27	E	56.5	Low	57.3	Low	161 Å²	161	117.5 Å²	117.5	75%	0.752	70%	0.7	S	S	*	*	T	Hydrogen-bonded Turn	trans	-76	-11.9	176.9	-67	-178.5	94.7	0	0	113.4	T23	T23-E27 PolarHBondContact O-N 3.23Å
28	Q	57.7	Low	57.2	Low	164 Å²	164	114.3 Å²	114.3	77%	0.766	70%	0.702	S	S	*	*	T	Hydrogen-bonded Turn	trans	-102.4	13.3	-178.5	-70.8	-165.4	3.4	0	0	114.7	G25 A26 P30	G25-Q28 PolarHBondContact O-N 3.07Å; A26-Q28 VanDerWaalsContact C-N 3.26Å; A26-Q28 PolarHBondContact O-N 3.24Å; Q28-P30 WeakPolarHBondContact O-CD 3.21Å
29	S	56.3	Low	57.1	Low	83 Å²	83	111 Å²	111	58%	0.58	70%	0.704	S	S	*	*			trans	-95.1	101.3	167.8	-169.9	0	0	0	0	110	G31	S29-G31 PolarHBondContact O-N 3Å
30	P	57.3	Low	56.8	Low	134 Å²	134	110.4 Å²	110.4	87%	0.87	71%	0.713	S	S	*	*			trans	-73.8	18.1	170.5	33.6	-36.2	0	0	0	112.2	Q28	Q28-P30 WeakPolarHBondContact O-CD 3.21Å
31	G	60.3	Low	56.7	Low	63 Å²	63	110.6 Å²	110.6	65%	0.649	72%	0.721	S	S	*	*			trans	-107.9	18	-165.7	0	0	0	0	0	116.1	S29	S29-G31 PolarHBondContact O-N 3Å
32	S	56.7	Low	56.5	Low	116 Å²	116	111.5 Å²	111.5	81%	0.811	74%	0.736	S	S	*	*			trans	-114.7	49.7	169.9	-155.6	0	0	0	0	111.8
33	R	61	Low	56.3	Low	248 Å²	248	112.3 Å²	112.3	94%	0.936	75%	0.745	S	S	*	*	S	Bend	trans	-100.6	90.7	156.6	-165.9	177.3	-167.9	148.5	2.3	106.7
34	G	54.7	Low	56.2	Low	72 Å²	72	114.8 Å²	114.8	74%	0.742	77%	0.765	S	S	*	*			trans	120.3	81.6	170.1	0	0	0	0	0	114.5
35	A	48.9	Very low	55.9	Low	97 Å²	97	119.6 Å²	119.6	80%	0.802	79%	0.789	S	S	*	*			trans	-95.6	126.6	132.9	0	0	0	0	0	105.4
36	A	45	Very low	55.7	Low	177 Å²	177	126.1 Å²	126.1	100%	1.463	82%	0.815	S	S	*	*			trans	-54.7	0	-179.8	0	0	0	0	0	113.1

Retrieved 36 of 36 residues in 7.2 ms (Link to these results)

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