A0A096NT42_PAPAN Loading...

Photoreceptor disc component

AlphaFold DB , UniProt , Accession A0A096NT42, Species PAPAN (Papio anubis, Olive baboon), Gene PRCD, Length 54 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M60.9Low87.1Confident193 Ų193106.7 Ų106.795%0.95159%0.587SS**  02.60-57.8-59.3174.500113.8T4M1-T4 PolarHBondContact O-OG1 3.4Å
2C75.3Confident87.3Confident104 Ų104101.2 Ų101.270%0.70357%0.565SS**Hα-helixtrans-92.8-31.6177.9-510000112.1T4 L5 F6C2-T4 VanDerWaalsContact C-N 3.33Å; C2-T4 PolarHBondContact O-N 3.25Å; C2-L5 PolarHBondContact O-N 2.81Å; C2-F6 PolarHBondContact O-N 2.94Å; C2-F6 WeakPolarHBondContact O-CB 3.27Å
3T88.7Confident87.4Confident105 Ų105102.5 Ų102.564%0.64457%0.567SS**Hα-helixtrans-62-39.1176.346.60000112.1F6 L7T3-F6 PolarHBondContact O-N 3.39Å; T3-L7 WeakPolarHBondContact O-CB 3.48Å; T3-L7 VanDerWaalsContact O-CG 3.23Å; T3-L7 WeakPolarHBondContact O-CG 3.36Å; T3-L7 PolarHBondContact O-N 3.24Å
4T90.9Very high87.4Confident73 Ų73102.8 Ų102.845%0.44857%0.566SS.*Hα-helixtrans-62.5-46.7173.627.40000111.8M1 C2 F6 L7 L8M1-T4 PolarHBondContact O-OG1 3.4Å; C2-T4 VanDerWaalsContact C-N 3.33Å; C2-T4 PolarHBondContact O-N 3.25Å; T4-F6 PolarHBondContact O-N 2.91Å; T4-L7 PolarHBondContact O-N 2.93Å; T4-L8 WeakPolarHBondContact O-CB 3.08Å; T4-L8 PolarHBondContact O-N 3.05Å; T4-L8 WeakPolarHBondContact O-CG 3.21Å
5L91.5Very high87.2Confident112 Ų112106.9 Ų106.959%0.58657%0.57SS**Hα-helixtrans-65.5-38.3177.2-64.7177.4000112.4C2 L8 S9C2-L5 PolarHBondContact O-N 2.81Å; L5-L8 PolarHBondContact O-N 2.9Å; L5-S9 VanDerWaalsContact O-CB 3.31Å; L5-S9 WeakPolarHBondContact O-CB 3.41Å; L5-S9 PolarHBondContact O-N 3.08Å; L5-S9 PolarHBondContact O-OG 2.98Å
6F89.9Confident86.6Confident146 Ų146112.2 Ų112.264%0.6458%0.579SS**Hα-helixtrans-65-44.7175.6-177.7-101000112.2C2 T3 T4 S9 T10C2-F6 PolarHBondContact O-N 2.94Å; C2-F6 WeakPolarHBondContact O-CB 3.27Å; T3-F6 PolarHBondContact O-N 3.39Å; T4-F6 PolarHBondContact O-N 2.91Å; F6-S9 PolarHBondContact O-N 2.79Å; F6-T10 PolarHBondContact O-OG1 3.37Å; F6-T10 WeakPolarHBondContact O-CB 3.43Å; F6-T10 PolarHBondContact O-N 2.98Å
7L94.6Very high85.7Confident114 Ų114116.3 Ų116.360%0.59759%0.586SS**Hα-helixtrans-62.9-45.4175.2-76.5168.4000111.5T3 T4 S9 T10 L11T3-L7 WeakPolarHBondContact O-CB 3.48Å; T3-L7 VanDerWaalsContact O-CG 3.23Å; T3-L7 WeakPolarHBondContact O-CG 3.36Å; T3-L7 PolarHBondContact O-N 3.24Å; T4-L7 PolarHBondContact O-N 2.93Å; L7-S9 PolarHBondContact O-N 3.4Å; L7-T10 PolarHBondContact O-N 3.29Å; L7-L11 WeakPolarHBondContact O-CB 3.5Å; L7-L11 PolarHBondContact O-N 3.02Å
8L93.9Very high85Confident110 Ų110117.8 Ų117.858%0.57658%0.583SS**Hα-helixtrans-62.5-41.8176.8-72.1172.1000111.8T4 L5 L11 A12T4-L8 WeakPolarHBondContact O-CB 3.08Å; T4-L8 PolarHBondContact O-N 3.05Å; T4-L8 WeakPolarHBondContact O-CG 3.21Å; L5-L8 PolarHBondContact O-N 2.9Å; L8-L11 PolarHBondContact O-N 2.85Å; L8-A12 VanDerWaalsContact O-CB 3.28Å; L8-A12 WeakPolarHBondContact O-CB 3.23Å; L8-A12 PolarHBondContact O-N 2.73Å
9S87.5Confident84.2Confident66 Ų66118.2 Ų118.246%0.46258%0.581SS.*Hα-helixtrans-64-43.4177.3-59.60000111.6L5 F6 L7 A12 M13L5-S9 VanDerWaalsContact O-CB 3.31Å; L5-S9 WeakPolarHBondContact O-CB 3.41Å; L5-S9 PolarHBondContact O-N 3.08Å; L5-S9 PolarHBondContact O-OG 2.98Å; F6-S9 PolarHBondContact O-N 2.79Å; L7-S9 PolarHBondContact O-N 3.4Å; S9-A12 PolarHBondContact O-N 2.74Å; S9-M13 WeakPolarHBondContact O-CG 3.31Å; S9-M13 PolarHBondContact O-N 3.43Å
10T91.4Very high83Confident61 Ų61115.4 Ų115.437%0.37458%0.578SS.*Hα-helixtrans-63.9-44.2176.7-54.70000111.4F6 L7 M13 L14F6-T10 PolarHBondContact O-OG1 3.37Å; F6-T10 WeakPolarHBondContact O-CB 3.43Å; F6-T10 PolarHBondContact O-N 2.98Å; L7-T10 PolarHBondContact O-N 3.29Å; T10-M13 PolarHBondContact O-N 2.91Å; T10-L14 WeakPolarHBondContact O-CB 3.3Å; T10-L14 PolarHBondContact O-N 3.38Å
11L93.1Very high81.8Confident90 Ų90115.2 Ų115.247%0.47158%0.579SS.*Hα-helixtrans-65.4-41.2178.6-168.364.3000111.6L7 L8 L14 W15L7-L11 WeakPolarHBondContact O-CB 3.5Å; L7-L11 PolarHBondContact O-N 3.02Å; L8-L11 PolarHBondContact O-N 2.85Å; L11-L14 PolarHBondContact O-N 2.94Å; L11-W15 WeakPolarHBondContact O-CB 3.25Å; L11-W15 PolarHBondContact O-N 3.47Å
12A90.2Very high81.6Confident40 Ų40113.8 Ų113.833%0.33156%0.563SS.*Hα-helixtrans-63.6-41.5175.500000112.5L8 S9 W15 R16L8-A12 VanDerWaalsContact O-CB 3.28Å; L8-A12 WeakPolarHBondContact O-CB 3.23Å; L8-A12 PolarHBondContact O-N 2.73Å; S9-A12 PolarHBondContact O-N 2.74Å; A12-W15 PolarHBondContact O-N 3.18Å; A12-R16 WeakPolarHBondContact O-CG 3.2Å; A12-R16 PolarHBondContact O-N 3.43Å
13M88.3Confident80.6Confident119 Ų119114.2 Ų114.259%0.58656%0.562SS**Hα-helixtrans-62.6-42.9173.7-76.8-172.7-72.300111.6S9 T10 R16 R17S9-M13 WeakPolarHBondContact O-CG 3.31Å; S9-M13 PolarHBondContact O-N 3.43Å; T10-M13 PolarHBondContact O-N 2.91Å; M13-R16 PolarHBondContact O-N 3.33Å; M13-R17 PolarHBondContact O-N 3.19Å; M13-R17 WeakPolarHBondContact O-CB 3.25Å
14L87.2Confident78.8Confident106 Ų106117 Ų11756%0.55557%0.568SS**Hα-helixtrans-66.5-40.4179.8-161.769.3000111.5T10 L11 R17 R18T10-L14 WeakPolarHBondContact O-CB 3.3Å; T10-L14 PolarHBondContact O-N 3.38Å; L11-L14 PolarHBondContact O-N 2.94Å; L14-R17 PolarHBondContact O-N 2.93Å; L14-R18 VanDerWaalsContact O-CB 3.3Å; L14-R18 WeakPolarHBondContact O-CB 3.28Å; L14-R18 PolarHBondContact O-N 3.49Å
15W85Confident77.4Confident165 Ų165117.9 Ų117.963%0.62558%0.575SS**Hα-helixtrans-61.1-50.8172.5-83.915.6000111.6L11 A12 R17 R18 F19L11-W15 WeakPolarHBondContact O-CB 3.25Å; L11-W15 PolarHBondContact O-N 3.47Å; A12-W15 PolarHBondContact O-N 3.18Å; W15-R17 VanDerWaalsContact C-N 3.3Å; W15-R17 PolarHBondContact O-N 3.44Å; W15-R18 PolarHBondContact O-N 2.89Å; W15-F19 VanDerWaalsContact O-CD2 3.25Å; W15-F19 PolarHBondContact O-N 2.81Å; W15-F19 WeakPolarHBondContact O-CD2 3.36Å; W15-F19 WeakPolarHBondContact O-CB 3.39Å; W15-F19 HydrophobicContact CB-CD2 4.36Å
16R77.1Confident75.5Confident191 Ų191120.7 Ų120.772%0.72159%0.585SS**Hα-helixtrans-57-43.8177.1-73.8177.9-174.2168.12.1111.7A12 M13 A20A12-R16 WeakPolarHBondContact O-CG 3.2Å; A12-R16 PolarHBondContact O-N 3.43Å; M13-R16 PolarHBondContact O-N 3.33Å; R16-A20 WeakPolarHBondContact O-CB 3.49Å; R16-A20 PolarHBondContact O-N 2.9Å
17R71.8Confident73.8Confident182 Ų182117.7 Ų117.769%0.68758%0.58SS**Hα-helixtrans-65.8-42.9177.2-168.3175.1-174.5-169.22.4112.2M13 L14 W15 N21M13-R17 PolarHBondContact O-N 3.19Å; M13-R17 WeakPolarHBondContact O-CB 3.25Å; L14-R17 PolarHBondContact O-N 2.93Å; W15-R17 VanDerWaalsContact C-N 3.3Å; W15-R17 PolarHBondContact O-N 3.44Å; R17-N21 VanDerWaalsContact O-CB 3.23Å; R17-N21 WeakPolarHBondContact O-CB 3.23Å; R17-N21 PolarHBondContact O-N 3.49Å
18R72.3Confident71.6Confident143 Ų143116.8 Ų116.854%0.5458%0.584SS.*Hα-helixtrans-67-39.3178.2-108.6-74.1-135.6-169.31.5112.7L14 W15 R22L14-R18 VanDerWaalsContact O-CB 3.3Å; L14-R18 WeakPolarHBondContact O-CB 3.28Å; L14-R18 PolarHBondContact O-N 3.49Å; W15-R18 PolarHBondContact O-N 2.89Å; R18-R22 PolarHBondContact O-N 3.49Å; R18-R22 WeakPolarHBondContact O-CG 3.43Å; R18-R22 VanDerWaalsContact O-CB 3.25Å; R18-R22 VanDerWaalsContact NH1-NE 3.19Å; R18-R22 WeakPolarHBondContact O-CB 3.45Å
19F69.8Low69.5Low125 Ų125119.2 Ų119.255%0.54860%0.597SS.*Hα-helixtrans-78-41.3178.5-81.9-78.7000111.1W15 R22 V23W15-F19 VanDerWaalsContact O-CD2 3.25Å; W15-F19 PolarHBondContact O-N 2.81Å; W15-F19 WeakPolarHBondContact O-CD2 3.36Å; W15-F19 WeakPolarHBondContact O-CB 3.39Å; W15-F19 HydrophobicContact CB-CD2 4.36Å; F19-R22 CarbonylContact O-C 3.48Å; F19-R22 WeakPolarHBondContact O-CA 3.32Å; F19-R22 PolarHBondContact O-N 3.45Å; F19-V23 VanDerWaalsContact O-CB 3.27Å; F19-V23 WeakPolarHBondContact O-CB 3.5Å; F19-V23 WeakPolarHBondContact O-CG2 3.19Å; F19-V23 PolarHBondContact O-N 3.26Å
20A61.4Low67.9Low62 Ų62121.4 Ų121.451%0.51261%0.608SS.*Hα-helixtrans-62.4-43.3172.900000112R16 R22 V23 Q24R16-A20 WeakPolarHBondContact O-CB 3.49Å; R16-A20 PolarHBondContact O-N 2.9Å; A20-R22 PolarHBondContact O-N 2.8Å; A20-V23 PolarHBondContact O-N 3.35Å; A20-Q24 PolarHBondContact O-N 2.94Å
21N56.5Low65.9Low113 Ų113125.7 Ų125.760%0.60463%0.628SS**Hα-helixtrans-64.1-21.1171.3-97.716.6000113.7R17R17-N21 VanDerWaalsContact O-CB 3.23Å; R17-N21 WeakPolarHBondContact O-CB 3.23Å; R17-N21 PolarHBondContact O-N 3.49Å
22R57.2Low63.9Low162 Ų162125.9 Ų125.961%0.61165%0.652SS**Hα-helixtrans-97.1-23.5179.4-81.2-171.8165.5-178.4-4.6113.7R18 F19 A20R18-R22 PolarHBondContact O-N 3.49Å; R18-R22 WeakPolarHBondContact O-CG 3.43Å; R18-R22 VanDerWaalsContact O-CB 3.25Å; R18-R22 VanDerWaalsContact NH1-NE 3.19Å; R18-R22 WeakPolarHBondContact O-CB 3.45Å; F19-R22 CarbonylContact O-C 3.48Å; F19-R22 WeakPolarHBondContact O-CA 3.32Å; F19-R22 PolarHBondContact O-N 3.45Å; A20-R22 PolarHBondContact O-N 2.8Å
23V54.1Low61.9Low114 Ų114127.8 Ų127.869%0.69167%0.668SS**Hα-helixtrans-97-20-179175.60000111.1F19 A20F19-V23 VanDerWaalsContact O-CB 3.27Å; F19-V23 WeakPolarHBondContact O-CB 3.5Å; F19-V23 WeakPolarHBondContact O-CG2 3.19Å; F19-V23 PolarHBondContact O-N 3.26Å; A20-V23 PolarHBondContact O-N 3.35Å
24Q50.5Low59.8Low162 Ų162126.8 Ų126.876%0.75768%0.678SS**  trans-131.284.7166.9-77.9-101.333.600110.7A20A20-Q24 PolarHBondContact O-N 2.94Å
25P61.8Low58.1Low93 Ų93133.3 Ų133.360%0.60470%0.696SS**  trans-112.7103.9153.930.5-15.6000109.6
26E51.7Low56.3Low170 Ų170129.5 Ų129.579%0.79471%0.707SS**  trans-159.9153.9152-108.6-91.4114.700107.4
27P54.4Low54.7Low83 Ų83124.9 Ų124.954%0.53970%0.704SS.*  -121.7110.5-107.235.9-19000108.9D29P27-D29 VanDerWaalsContact C-N 3.3Å; P27-D29 PolarHBondContact O-N 2.88Å; P27-D29 VanDerWaalsContact O-N 3.08Å
28S49Very low53.6Low96 Ų96121.5 Ų121.567%0.67171%0.708SS**  trans-85.383.8170.9179.70000108.1V30S28-V30 PolarHBondContact O-N 2.89Å; S28-V30 WeakPolarHBondContact OG-CG2 3.32Å; S28-V30 PolarHBondContact OG-O 3.41Å
29D50Low52.4Low161 Ų161121.1 Ų121.186%0.86172%0.722SS**  trans-62.650.2156.2-101.2-76000110.5P27P27-D29 VanDerWaalsContact C-N 3.3Å; P27-D29 PolarHBondContact O-N 2.88Å; P27-D29 VanDerWaalsContact O-N 3.08Å
30V53.9Low51.2Low112 Ų112123.1 Ų123.168%0.67974%0.738SS**SBendtrans-149.9117.8171.4-1160000107.8S28S28-V30 PolarHBondContact O-N 2.89Å; S28-V30 WeakPolarHBondContact OG-CG2 3.32Å; S28-V30 PolarHBondContact OG-O 3.41Å
31D48.6Very low50.5Low150 Ų150124.7 Ų124.780%0.80275%0.751SS**  trans75.970178-84.2-16.5000119.5A33D31-A33 PolarHBondContact O-N 3.39Å
32G50.9Low49.7Very low95 Ų95125.7 Ų125.798%0.97976%0.756SS**  trans-65.556.4148.500000113.8
33A47.7Very low49.6Very low80 Ų80124 Ų12466%0.66177%0.767SS**  trans-147.546.9178.800000115D31D31-A33 PolarHBondContact O-N 3.39Å
34A45.8Very low49.8Very low97 Ų97126.8 Ų126.880%0.80277%0.772SS**  trans-158.151.2156.300000111.7G36A34-G36 PolarHBondContact O-N 3.4Å
35R50.4Low49.5Very low244 Ų244124.3 Ų124.392%0.92177%0.773SS**SBendtrans-62.7127.7158.8172.2157.5145.4-179.3-9.4107.4S37R35-S37 PolarHBondContact O-N 3.21Å
36G47.3Very low49.3Very low84 Ų84126 Ų12687%0.86679%0.786SS**SBendtrans-41.2105-177.600000114.4A34A34-G36 PolarHBondContact O-N 3.4Å
37S43.7Very low48.9Very low94 Ų94121 Ų12166%0.65778%0.781SS**  trans-153.993.6161.7-168.30000108.9R35 V39R35-S37 PolarHBondContact O-N 3.21Å; S37-V39 PolarHBondContact O-N 2.89Å
38S49Very low48.9Very low111 Ų111127.5 Ų127.578%0.77680%0.795SS**SBendtrans4549.7136.472.10000119.3
39V45.9Very low48.5Very low136 Ų136131.5 Ų131.582%0.82480%0.803SS**  trans-149.682.8160.7175.20000108S37S37-V39 PolarHBondContact O-N 2.89Å
40D45.4Very low48.6Very low166 Ų166131.9 Ų131.989%0.88880%0.797SS**  trans-139.274.7155.9-160.6-92.1000106.6
41A47.5Very low48.1Very low95 Ų95134.5 Ų134.579%0.78580%0.802SS**  trans-148.178.6162.400000105.6
42D39.5Very low48.1Very low134 Ų134133.3 Ų133.372%0.71780%0.802SS**  164.6117.7123.2-162.6-150.7000110.8Q44D42-Q44 PolarHBondContact O-N 2.89Å
43P53.7Low48.1Very low127 Ų127136.1 Ų136.183%0.82579%0.794SS**  trans-9479.717736.1-28.3000110
44Q58.8Low47.9Very low172 Ų172145.5 Ų145.580%0.80482%0.82SS**  trans-155.7103.5171.1-148.8174.5-109.400115.1D42D42-Q44 PolarHBondContact O-N 2.89Å
45S45.1Very low48Very low110 Ų110147.9 Ų147.977%0.76982%0.821SS**  trans158.584.6157.1162.30000107.2
46S57.7Low47.9Very low128 Ų128142.8 Ų142.890%0.89582%0.815SS**  37.177.757.2-161.30000113.9
47G43.2Very low47.9Very low66 Ų66146.1 Ų146.168%0.6881%0.813SS**  trans-165.7104.5171.400000111.9
48R53.2Low48.2Very low219 Ų219149.2 Ų149.283%0.82682%0.822SS**  trans-68.8135.6174.1-79166.2158.8160.7-5.4111.9
49E41.7Very low48.1Very low181 Ų181151.6 Ų151.685%0.84683%0.825SS**  trans-166.199.7148.751.8-162.6128.300106.1
50K52.2Low48.3Very low168 Ų168152.6 Ų152.673%0.7383%0.825SS**  43.3105.568.8-47.5-163.1-171.9-139.30112.3
51E42.7Very low48.5Very low167 Ų167151.6 Ų151.678%0.7882%0.82SS**  trans-38.2158.8167.1-78.8172.569.700114.2
52P49.5Very low48.6Very low125 Ų125156 Ų15681%0.81282%0.823SS**  -138.4134.5101.432.8-17.9000114.7
53L49.5Very low49.3Very low155 Ų155157.8 Ų157.881%0.81283%0.832SS**  trans-23125.1150.8-146.892.3000114.6
54K44.8Very low48.9Very low276 Ų276160.6 Ų160.6100%1.283%0.832SS**  trans-154.90150.3-136.5173.4-173.6173.50112

Retrieved 54 of 54 residues in 46.2 ms (Link to these results)