A0A5K4F6K4_SCHMA Loading...

RNA-binding protein

AlphaFold DB , UniProt , Accession A0A5K4F6K4, Species SCHMA (Schistosoma mansoni, Blood fluke), Gene n/a, Length 82 aa.

Structure Viewer
Loading PAE data...
(Predicted Aligned Error values between residue pairs)
Error loading PAE data: please refresh the page.

Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M46Very low52.4Low235 Ų235160.7 Ų160.7100%1.15880%0.8SS**  0107.20-69.5167.1-179.900107.4N3M1-N3 PolarHBondContact O-N 3.47Å
2V49.8Very low51.9Low141 Ų141154.1 Ų154.186%0.85580%0.803SS**  trans-82.1114.7-170.1-177.40000109.4R4V2-R4 PolarHBondContact O-N 3.07Å; V2-R4 VanDerWaalsContact O-N 3.09Å
3N53.5Low51Low137 Ų137147.8 Ų147.873%0.73380%0.798SS**  trans-57.7112.2-177.9-75.8-16.1000110.9M1 W5 G6M1-N3 PolarHBondContact O-N 3.47Å; N3-W5 PolarHBondContact O-N 3.26Å; N3-G6 PolarHBondContact O-N 3.28Å
4R59.3Low50.1Low209 Ų209144.9 Ų144.979%0.78981%0.805SS**G310 helixtrans-63.9-2179.7-154.1-176.3-70.6-153.50.9113.7V2V2-R4 PolarHBondContact O-N 3.07Å; V2-R4 VanDerWaalsContact O-N 3.09Å
5W55.1Low49.2Very low244 Ų244140.8 Ų140.892%0.92481%0.808SS**G310 helixtrans-88.7-10.9-176.4-69.472.4000114.1N3N3-W5 PolarHBondContact O-N 3.26Å
6G55.2Low48.5Very low65 Ų65137.1 Ų137.167%0.6781%0.811SS**G310 helixtrans-84.3-2.9179.800000115.8N3N3-G6 PolarHBondContact O-N 3.28Å
7R55.4Low48Very low196 Ų196133.8 Ų133.874%0.7481%0.811SS**G310 helixtrans-94-2.7-168.1-98-171.4-73.9-145.2-3116.2
8N51.5Low47.5Very low155 Ų155130.9 Ų130.983%0.82981%0.814SS**G310 helixtrans-116.819.4-178-79.9-17000113.6P10N8-P10 WeakPolarHBondContact O-CD 3.45Å
9A51.1Low47.3Very low86 Ų86129.1 Ų129.171%0.71181%0.806SS**  trans-71.4109.5168.700000108.2Y11A9-Y11 PolarHBondContact O-N 3.01Å; A9-Y11 VanDerWaalsContact O-N 3.12Å
10P54.8Low47.5Very low84 Ų84126.8 Ų126.855%0.54581%0.809SS.*  trans-71.3111.5171.622.2-10.1000106.9N8N8-P10 WeakPolarHBondContact O-CD 3.45Å
11Y44.8Very low47.4Very low216 Ų216129.9 Ų129.985%0.84781%0.806SS**  trans23.6121.4140.247.3-94.1000117.7A9A9-Y11 PolarHBondContact O-N 3.01Å; A9-Y11 VanDerWaalsContact O-N 3.12Å
12G46.6Very low47.9Very low81 Ų81128.3 Ų128.384%0.83580%0.798SS**  trans103.393.8161.200000112.8
13G40.3Very low47.9Very low72 Ų72125.2 Ų125.274%0.74280%0.795SS**  10896.375.500000106.7
14A38.3Very low47.8Very low108 Ų108124.8 Ų124.889%0.89380%0.803SS**  48.797.291.900000113.3
15G36.3Very low47.1Very low83 Ų83117.5 Ų117.586%0.85679%0.793SS**  trans85.7143.2146.700000118.4
16G38.5Very low46.6Very low82 Ų82113.6 Ų113.685%0.84580%0.795SS**  trans90113.9168.900000112.5
17G38.8Very low46.6Very low80 Ų80114.9 Ų114.983%0.82580%0.8SS**  cis100.595.345.300000108.1
18G39.4Very low46.5Very low83 Ų83110.9 Ų110.986%0.85680%0.802SS**  trans44.5110.3156.100000119.7
19S44.1Very low47.1Very low96 Ų96106.4 Ų106.467%0.67179%0.787SS**  trans-157.789.2143.9-164.70000110Y21S19-Y21 WeakPolarHBondContact OG-CE1 2.86Å
20G51.9Low47.5Very low83 Ų83108.6 Ų108.686%0.85679%0.786SS**  trans-121.736-179.400000112.7
21Y45.9Very low47.9Very low192 Ų192112.8 Ų112.875%0.75380%0.796SS**  trans-103.991.6-179.861.1-89.4000111.9S19S19-Y21 WeakPolarHBondContact OG-CE1 2.86Å
22M54.7Low48.8Very low202 Ų202112.9 Ų112.9100%0.99580%0.797SS**  trans-144.672142.8-80.3-157.6-17700107.3
23G51.2Low49.6Very low76 Ų76117.4 Ų117.478%0.78480%0.798SS**  trans-134.988.2-18000000110.6G25G23-G25 PolarHBondContact O-N 3.18Å
24S50.1Low51.1Low128 Ų128117.1 Ų117.190%0.89580%0.795SS**  trans-75.6107.9160.3150.50000107.6
25G46.3Very low52.4Low56 Ų56114.9 Ų114.958%0.57778%0.783SS**SBendtrans83.7101.5167.600000115G23 A27G23-G25 PolarHBondContact O-N 3.18Å; G25-A27 PolarHBondContact O-N 3.22Å
26V43.8Very low54.1Low161 Ų161116.9 Ų116.998%0.97678%0.781SS**  trans2284.3150.2-81.20000117.1
27A54Low55.7Low93 Ų93116.2 Ų116.277%0.76976%0.76SS**  trans-149.984.915400000108.3G25 A29G25-A27 PolarHBondContact O-N 3.22Å; A27-A29 PolarHBondContact O-N 3.38Å
28S54.4Low57.4Low111 Ų111117.3 Ų117.378%0.77675%0.752SS**  trans-73.6103.9166.348.10000107.9
29A64.8Low59.2Low62 Ų62120.7 Ų120.751%0.51275%0.751SS.*  trans-93.3104.4165.100000107.5A27 F31A27-A29 PolarHBondContact O-N 3.38Å; A29-F31 HydrophobicContact CB-CD2 4.29Å; A29-F31 PolarHBondContact O-N 2.97Å; A29-F31 WeakPolarHBondContact O-CD2 3.45Å; A29-F31 VanDerWaalsContact O-CD2 3.24Å; A29-F31 HydrophobicContact CB-CZ 3.82Å; A29-F31 HydrophobicContact CB-CE2 3.61Å
30D58.2Low60.8Low132 Ų132120.8 Ų120.871%0.70674%0.744SS**  trans-72.7113.9169.8-66.7-51.8000108.5
31F64.2Low61.8Low171 Ų171127 Ų12775%0.7574%0.741SS**  trans-95.7110.1174.7-66.4-82.6000109.6A29 M33A29-F31 HydrophobicContact CB-CD2 4.29Å; A29-F31 PolarHBondContact O-N 2.97Å; A29-F31 WeakPolarHBondContact O-CD2 3.45Å; A29-F31 VanDerWaalsContact O-CD2 3.24Å; A29-F31 HydrophobicContact CB-CZ 3.82Å; A29-F31 HydrophobicContact CB-CE2 3.61Å; F31-M33 PolarHBondContact O-N 3.03Å
32Y63Low63.4Low219 Ų219128.8 Ų128.886%0.85975%0.747SS**  trans-81.2106.2165.5-66.4-84.3000109.1G34Y32-G34 PolarHBondContact O-N 3.48Å
33M63.8Low64.7Low176 Ų176124.7 Ų124.787%0.86774%0.735SS**  trans-78.9102.4169.9-70.9-70.6-173.400108.7F31F31-M33 PolarHBondContact O-N 3.03Å
34G72.4Confident66Low65 Ų65131.2 Ų131.267%0.6774%0.738SS**PPolyproline II helixtrans-60150.7162.500000110.4Y32Y32-G34 PolarHBondContact O-N 3.48Å
35G65.4Low67.4Low62 Ų62132 Ų13264%0.63973%0.732SS**PPolyproline II helixtrans-59.8138.1175.900000110.7T37G35-T37 PolarHBondContact O-N 3.47Å
36P71.8Confident68.9Low125 Ų125133 Ų13381%0.81273%0.727SS**PPolyproline II helixtrans-65.7120.1-176.826.8-33.7000110
37T72.3Confident70.6Confident68 Ų68129 Ų12942%0.41771%0.71SS.*PPolyproline II helixtrans-87.5157.3170.172.40000109.9G35 N39 D40G35-T37 PolarHBondContact O-N 3.47Å; T37-N39 VanDerWaalsContact O-N 3.09Å; T37-N39 PolarHBondContact OG1-N 3.06Å; T37-N39 PolarHBondContact O-N 3.35Å; T37-D40 PolarHBondContact OG1-OD2 3.32Å; T37-D40 PolarHBondContact OG1-N 2.96Å; T37-D40 PolarHBondContact O-N 3.15Å; T37-D40 WeakPolarHBondContact O-CB 3.12Å; T37-D40 PolarHBondContact N-OD2 2.99Å; T37-D40 WeakPolarHBondContact CB-OD2 3.18Å; T37-D40 WeakPolarHBondContact CA-OD2 3.36Å
38P73.7Confident71.6Confident102 Ų102130.5 Ų130.566%0.66271%0.712SS**G310 helixtrans-56.7-23.7172.7-26.135.5000113.9D40 R41P38-D40 VanDerWaalsContact C-N 3.3Å; P38-R41 WeakPolarHBondContact O-CG 3.36Å
39N78.4Confident72.5Confident155 Ų155131 Ų13183%0.82971%0.711SS**G310 helixtrans-76.2-15.5176.1-67-22.4000113T37 R41T37-N39 VanDerWaalsContact O-N 3.09Å; T37-N39 PolarHBondContact OG1-N 3.06Å; T37-N39 PolarHBondContact O-N 3.35Å; N39-R41 PolarHBondContact O-N 2.77Å
40D76.7Confident72.8Confident97 Ų97132.4 Ų132.452%0.51972%0.722SS.*G310 helixtrans-83.43.8177.3-59.3-47.8000112.8T37 P38 R42T37-D40 PolarHBondContact OG1-OD2 3.32Å; T37-D40 PolarHBondContact OG1-N 2.96Å; T37-D40 PolarHBondContact O-N 3.15Å; T37-D40 WeakPolarHBondContact O-CB 3.12Å; T37-D40 PolarHBondContact N-OD2 2.99Å; T37-D40 WeakPolarHBondContact CB-OD2 3.18Å; T37-D40 WeakPolarHBondContact CA-OD2 3.36Å; P38-D40 VanDerWaalsContact C-N 3.3Å; D40-R42 PolarHBondContact O-N 2.88Å
41R73.7Confident73.5Confident213 Ų213134.8 Ų134.880%0.80473%0.726SS**  trans-66.4101.8175-73.8-178.8177177.91.6109.9P38 N39P38-R41 WeakPolarHBondContact O-CG 3.36Å; N39-R41 PolarHBondContact O-N 2.77Å
42R79.3Confident73.6Confident230 Ų230131 Ų13187%0.86872%0.718SS**  trans-72.4142.5169.4-65.1-177.3178-138.2-1.9109.9D40D40-R42 PolarHBondContact O-N 2.88Å
43P81.7Confident73.6Confident116 Ų116128.1 Ų128.175%0.75371%0.711SS**  trans-57.3147.9170.525.7-33.3000109.5N45P43-N45 PolarHBondContact O-N 3.32Å
44Y78.6Confident73.2Confident214 Ų214130.1 Ų130.184%0.83971%0.71SS**  trans-62.2102.4177-175.8-110.4000109.3V46Y44-V46 WeakPolarHBondContact OH-CG2 3.35Å; Y44-V46 HydrophobicContact CG-CG2 4.48Å; Y44-V46 HydrophobicContact CE2-CG2 3.77Å; Y44-V46 HydrophobicContact CD2-CG2 4.43Å; Y44-V46 HydrophobicContact CE1-CG2 3.11Å; Y44-V46 HydrophobicContact CD1-CG2 3.86Å
45N79Confident72.3Confident145 Ų145129.4 Ų129.478%0.77570%0.703SS**  trans-120.393.4176.5-173.119.4000107.7P43 A47P43-N45 PolarHBondContact O-N 3.32Å; N45-A47 PolarHBondContact O-N 3.43Å
46V77.1Confident71.7Confident77 Ų77128.6 Ų128.647%0.46769%0.694SS.*PPolyproline II helixtrans-69.7122.2175.3-173.90000107.2Y44Y44-V46 WeakPolarHBondContact OH-CG2 3.35Å; Y44-V46 HydrophobicContact CG-CG2 4.48Å; Y44-V46 HydrophobicContact CE2-CG2 3.77Å; Y44-V46 HydrophobicContact CD2-CG2 4.43Å; Y44-V46 HydrophobicContact CE1-CG2 3.11Å; Y44-V46 HydrophobicContact CD1-CG2 3.86Å
47A79.7Confident70.8Confident75 Ų75129.9 Ų129.962%0.6268%0.684SS**PPolyproline II helixtrans-53.2128.6169.800000108.2N45 V49N45-A47 PolarHBondContact O-N 3.43Å; A47-V49 PolarHBondContact O-N 3.09Å
48P76Confident69.9Low125 Ų125135.3 Ų135.381%0.81270%0.697SS**PPolyproline II helixtrans-57.1118.2-178.522.7-32.1000108.4A50P48-A50 PolarHBondContact O-N 2.97Å
49V71.9Confident68.9Low123 Ų123137.3 Ų137.375%0.74570%0.698SS**  trans-66.9111.4172.7179.50000106A47 K51A47-V49 PolarHBondContact O-N 3.09Å; V49-K51 PolarHBondContact O-N 3.38Å
50A72Confident67.7Low90 Ų90135.3 Ų135.374%0.74469%0.687SS**  trans-56.2111.8168.600000107P48 P52P48-A50 PolarHBondContact O-N 2.97Å; A50-P52 WeakPolarHBondContact O-CD 3.43Å; A50-P52 VanDerWaalsContact O-N 3.13Å
51K72.3Confident66.4Low183 Ų183135.9 Ų135.980%0.79669%0.69SS**  trans-56.6120.7172.7-78.5166.9175.1169.40106.6V49 F53V49-K51 PolarHBondContact O-N 3.38Å; K51-F53 PolarHBondContact O-N 2.93Å; K51-F53 VanDerWaalsContact O-N 3.15Å
52P67.6Low65.3Low91 Ų91133.1 Ų133.159%0.59168%0.68SS**  trans-61.3124.9174.224.7-31.1000107.3A50 Y54A50-P52 WeakPolarHBondContact O-CD 3.43Å; A50-P52 VanDerWaalsContact O-N 3.13Å; P52-Y54 HydrophobicContact CB-CD2 3.66Å; P52-Y54 HydrophobicContact CB-CE2 3.51Å; P52-Y54 HydrophobicContact CG-CD2 3.72Å; P52-Y54 HydrophobicContact CG-CE2 3.61Å; P52-Y54 PolarHBondContact O-N 3.48Å
53F62.5Low64Low159 Ų159127.2 Ų127.270%0.69767%0.666SS**  trans-67.178.3175.2-77.3-91.3000109.6K51 G55 Y57K51-F53 PolarHBondContact O-N 2.93Å; K51-F53 VanDerWaalsContact O-N 3.15Å; F53-G55 PolarHBondContact O-N 2.97Å; F53-Y57 WeakPolarHBondContact CG-OH 3.15Å; F53-Y57 HydrophobicContact CB-CE2 3.89Å; F53-Y57 WeakPolarHBondContact CB-OH 3.4Å
54Y55.5Low62.7Low217 Ų217129.7 Ų129.785%0.85166%0.66SS**SBendtrans-87.382.6163.8-74.1-82.5000107.6P52P52-Y54 HydrophobicContact CB-CD2 3.66Å; P52-Y54 HydrophobicContact CB-CE2 3.51Å; P52-Y54 HydrophobicContact CG-CD2 3.72Å; P52-Y54 HydrophobicContact CG-CE2 3.61Å; P52-Y54 PolarHBondContact O-N 3.48Å
55G53Low61.5Low50 Ų50127.4 Ų127.452%0.51565%0.65SS.*SBendtrans158-22.7169.800000117.5F53 Y57F53-G55 PolarHBondContact O-N 2.97Å; G55-Y57 PolarHBondContact O-N 3.09Å
56G52.1Low60.3Low45 Ų45123.4 Ų123.446%0.46463%0.634SS.*THydrogen-bonded Turntrans-84.41.2-163.900000118.3
57Y52.9Low59.2Low152 Ų152125.2 Ų125.260%0.59664%0.641SS**THydrogen-bonded Turntrans-122.7-3.6-167.6-39.8-67.2000115.3F53 G55F53-Y57 WeakPolarHBondContact CG-OH 3.15Å; F53-Y57 HydrophobicContact CB-CE2 3.89Å; F53-Y57 WeakPolarHBondContact CB-OH 3.4Å; G55-Y57 PolarHBondContact O-N 3.09Å
58R53.5Low58Low183 Ų183129.2 Ų129.269%0.69164%0.64SS**THydrogen-bonded Turntrans-96.7-40.9-176.4-69.7-167.5-174.1-175.83.7112.2D60 Y62R58-D60 PolarHBondContact O-N 2.68Å; R58-Y62 HydrophobicContact CB-CD2 4.22Å; R58-Y62 HydrophobicContact CB-CE2 3.83Å; R58-Y62 HydrophobicContact CG-CE2 4.05Å; R58-Y62 WeakPolarHBondContact O-CD2 3.24Å; R58-Y62 WeakPolarHBondContact O-CE2 3.11Å
59E53.1Low57Low144 Ų144132.1 Ų132.167%0.67364%0.635SS**Hα-helixtrans-74.3-32.6-168.3-72.9149.6-160.100114N61 N63E59-N61 PolarHBondContact O-N 2.73Å; E59-N63 PolarHBondContact O-ND2 3.41Å
60D53.1Low56.1Low112 Ų112132.3 Ų132.360%0.59963%0.632SS**Hα-helixtrans-79.8-17.8-179.1-66.9-35.6000114.7R58R58-D60 PolarHBondContact O-N 2.68Å
61N50.1Low55.4Low110 Ų110134.2 Ų134.259%0.58863%0.629SS**Hα-helixtrans-97.6-20.2-176-98.2-38.2000113.8E59E59-N61 PolarHBondContact O-N 2.73Å
62Y51.1Low54.6Low154 Ų154134.5 Ų134.560%0.60463%0.631SS**Hα-helixtrans-93.2-27.4178.5-61.4-59.6000113.2R58R58-Y62 HydrophobicContact CB-CD2 4.22Å; R58-Y62 HydrophobicContact CB-CE2 3.83Å; R58-Y62 HydrophobicContact CG-CE2 4.05Å; R58-Y62 WeakPolarHBondContact O-CD2 3.24Å; R58-Y62 WeakPolarHBondContact O-CE2 3.11Å
63N52.2Low53.8Low107 Ų107141.3 Ų141.357%0.57265%0.645SS**Hα-helixtrans-71.7-29.4177.9-74.2-20.1000113.4E59 R65 S66E59-N63 PolarHBondContact O-ND2 3.41Å; N63-R65 VanDerWaalsContact C-N 3.28Å; N63-R65 PolarHBondContact O-N 3.12Å; N63-S66 PolarHBondContact O-OG 3.44Å
64R53.5Low53Low167 Ų167136.4 Ų136.463%0.6364%0.638SS**Hα-helixtrans-78.5-2.8-180-67.5-166.8-124.4-176.9-3.5115.4R68R64-R68 PolarHBondContact O-NE 3.44Å; R64-R68 PolarHBondContact O-NH2 3.31Å
65R52.7Low52.5Low167 Ų167129.7 Ų129.763%0.6364%0.636SS**Hα-helixtrans-103.5-22.4-178.7-80.9-173.9-173.2-175.73113.4N63N63-R65 VanDerWaalsContact C-N 3.28Å; N63-R65 PolarHBondContact O-N 3.12Å
66S53.8Low52.4Low61 Ų61137.4 Ų137.443%0.42766%0.655SS.*Hα-helixtrans-71.3-43.1174.431.10000111.4N63 R68 R69N63-S66 PolarHBondContact O-OG 3.44Å; S66-R68 PolarHBondContact O-N 3.25Å; S66-R69 PolarHBondContact O-N 3.18Å
67D54.2Low52.5Low114 Ų114147 Ų14761%0.6168%0.677SS**THydrogen-bonded Turntrans-71.8-17.5-172.4-48.3-23.9000113.6
68R54.6Low52.4Low160 Ų160143.1 Ų143.160%0.60468%0.684SS**THydrogen-bonded Turntrans-93-7.5179-80.8-176.1-78.5176.9-7.6114.2R64 S66R64-R68 PolarHBondContact O-NE 3.44Å; R64-R68 PolarHBondContact O-NH2 3.31Å; S66-R68 PolarHBondContact O-N 3.25Å
69R55.4Low52.6Low186 Ų186142.5 Ų142.570%0.70269%0.689SS**THydrogen-bonded Turntrans-85.7-19.4-177.9-76.7-178.4-179.5-163.9-0.2113.1S66S66-R69 PolarHBondContact O-N 3.18Å
70D54Low52.7Low127 Ų127147.3 Ų147.368%0.67970%0.701SS**SBendtrans-79.7-22.8176.9-69.8-27.1000112.8
71D56.2Low52.4Low129 Ų129150.9 Ų150.969%0.6971%0.711SS**SBendtrans-75.7-25.2178.8-62.6-32.8000113.4
72F55.2Low52.3Low190 Ų190152.7 Ų152.783%0.83376%0.755SS**SBendtrans-97.3-8-173.5-109.1-94.6000114.6
73R51.1Low52.4Low234 Ų234152.6 Ų152.688%0.88376%0.763SS**SBendtrans-147.558.1-179.4-65.4-175.9-171.3167.22112.3
74G45.2Very low52.4Low55 Ų55155 Ų15557%0.56777%0.773SS**  trans-173.5-14.9177.300000121K76G74-K76 PolarHBondContact O-N 3.24Å
75G45.5Very low52.3Low77 Ų77154.3 Ų154.379%0.79478%0.781SS**  trans-80.41.8-159.700000120.4
76K51.4Low52.3Low211 Ų211153.6 Ų153.692%0.91779%0.79SS**  trans-99.242.5178-77.2-138.6-174.4-175.70114.2G74G74-K76 PolarHBondContact O-N 3.24Å
77R53.3Low52.2Low246 Ų246159.4 Ų159.493%0.92881%0.813SS**  trans-129.755.4170.3-65.2-174.2179.4-173.60.5111.2
78G52.1Low52.1Low72 Ų72162.4 Ų162.474%0.74283%0.826SS**  trans-90.1132.3160.500000109.5
79Q56Low51.9Low169 Ų169162.6 Ų162.679%0.7984%0.842SS**  trans-40.8132.3-171.5-168.6-179.21.500115K81Q79-K81 PolarHBondContact O-N 3.26Å
80R57Low51.6Low246 Ų246160.8 Ų160.893%0.92885%0.853SS**  trans-65.4103.2156.2-78.8-175.7169.4-166.2-3.7106.9G82R80-G82 PolarHBondContact O-N 3.39Å
81K46.4Very low51.4Low186 Ų186163.6 Ų163.681%0.80987%0.867SS**  trans-68.6124.2157-87.6-174172-177.40106.7Q79Q79-K81 PolarHBondContact O-N 3.26Å
82G48Very low51Low148 Ų148166.7 Ų166.7100%1.52688%0.883SS**  trans-690162.700000111.5R80R80-G82 PolarHBondContact O-N 3.39Å

Retrieved 82 of 82 residues in 52.8 ms (Link to these results)