G4M1H4_SCHMA Loading...

YpzI family protein

AlphaFold DB , UniProt , Accession G4M1H4, Species SCHMA (Schistosoma mansoni, Blood fluke), Gene n/a, Length 50 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M46.6Very low54.4Low247 Ų247157.5 Ų157.5100%1.21785%0.847SS**  095.30-163177.3-81.100105.3
2E56.7Low54.5Low200 Ų200160 Ų16094%0.93584%0.837SS**  trans-85.9119.7179.4-70.5176.2171.600107.6
3G49.9Very low54.2Low69 Ų69158.1 Ų158.171%0.71182%0.824SS**  trans-82.2136.8-179.400000110.8I5G3-I5 PolarHBondContact O-N 3.25Å
4L63.9Low54.3Low168 Ų168149.9 Ų149.988%0.8880%0.798SS**  trans-69.6114.3171.8-70.2164.9000108.7I6L4-I6 PolarHBondContact O-N 3.39Å
5I62.8Low54.2Low160 Ų160148 Ų14882%0.82178%0.782SS**  trans-80106.6169.7-58.7175.5000106.5G3 E7G3-I5 PolarHBondContact O-N 3.25Å; I5-E7 PolarHBondContact O-N 3.34Å
6I57.5Low53.9Low143 Ų143146.1 Ų146.173%0.73377%0.772SS**  trans-87.5100.3171.6-56176.1000106.4L4 Q8L4-I6 PolarHBondContact O-N 3.39Å; I6-Q8 PolarHBondContact O-N 3.08Å; I6-Q8 VanDerWaalsContact O-N 3.15Å
7E54.7Low53.7Low169 Ų169144.8 Ų144.879%0.7976%0.761SS**  trans-62113.1166.7-86.6-177.9158.500108.6I5 S9I5-E7 PolarHBondContact O-N 3.34Å; E7-S9 PolarHBondContact O-N 3.15Å; E7-S9 VanDerWaalsContact O-N 3.08Å
8Q51.6Low53.7Low183 Ų183142.8 Ų142.886%0.85575%0.75SS**  trans-76.191.8170.4-67-175.3-6.600107.7I6 S10I6-Q8 PolarHBondContact O-N 3.08Å; I6-Q8 VanDerWaalsContact O-N 3.15Å; Q8-S10 PolarHBondContact O-N 2.96Å
9S47.3Very low53.7Low113 Ų113141.5 Ų141.579%0.7974%0.743SS**  trans-63.798.7168.310.70000108.7E7 E11E7-S9 PolarHBondContact O-N 3.15Å; E7-S9 VanDerWaalsContact O-N 3.08Å; S9-E11 PolarHBondContact O-N 2.93Å
10S53.3Low53.6Low117 Ų117140.2 Ų140.282%0.81873%0.733SS**  trans-76.568.5174.7163.60000110Q8Q8-S10 PolarHBondContact O-N 2.96Å
11E53.6Low53.6Low164 Ų164140.6 Ų140.677%0.76673%0.731SS**  trans-118.757.1166.8-147.9169.7-152.200109.9S9 M13S9-E11 PolarHBondContact O-N 2.93Å; E11-M13 HydrophobicContact CG-CG 4.19Å; E11-M13 PolarHBondContact O-N 3.01Å
12Y55.7Low53.9Low187 Ų187132.8 Ų132.873%0.73370%0.697SS**  trans-81.565.9175.5-131.9-94.3000109.8E15Y12-E15 HydrophobicContact CD1-CG 4.48Å; Y12-E15 HydrophobicContact CE1-CG 4.16Å; Y12-E15 WeakPolarHBondContact CE1-OE1 3.47Å
13M51.1Low53.7Low135 Ų135128.5 Ų128.567%0.66568%0.677SS**  trans-94.46-178.6-75.5-82.3-119.600113.6E11E11-M13 HydrophobicContact CG-CG 4.19Å; E11-M13 PolarHBondContact O-N 3.01Å
14G54.9Low53.6Low44 Ų44131.4 Ų131.445%0.45467%0.672SS.*SBendtrans-79.7-42.3-17400000114.9
15E53.6Low53.1Low121 Ų121126.3 Ų126.357%0.56566%0.66SS**Hα-helixtrans-76.7-32.9-165.9-65-175.817200113.5Y12 Q17 L19Y12-E15 HydrophobicContact CD1-CG 4.48Å; Y12-E15 HydrophobicContact CE1-CG 4.16Å; Y12-E15 WeakPolarHBondContact CE1-OE1 3.47Å; E15-Q17 PolarHBondContact O-N 3.39Å; E15-L19 PolarHBondContact O-N 3.25Å
16N49.1Very low52.6Low117 Ų117125.3 Ų125.363%0.62665%0.651SS**Hα-helixtrans-72.7-25.4-178.7-81-25.2000113.5Q20N16-Q20 WeakPolarHBondContact O-CG 3.43Å; N16-Q20 PolarHBondContact O-N 3.49Å
17Q51.1Low52.2Low124 Ų124126.7 Ų126.758%0.57965%0.648SS**Hα-helixtrans-73.5-40.2177.9-69.2-175.7100111.6E15 L19 Q20 E21E15-Q17 PolarHBondContact O-N 3.39Å; Q17-L19 VanDerWaalsContact C-N 3.31Å; Q17-L19 PolarHBondContact O-N 3.35Å; Q17-Q20 PolarHBondContact O-N 3.45Å; Q17-Q20 VanDerWaalsContact O-N 3.11Å; Q17-E21 PolarHBondContact O-N 3.21Å; Q17-E21 VanDerWaalsContact O-N 3.07Å
18I53.9Low52.2Low109 Ų109127.9 Ų127.956%0.55965%0.65SS**Hα-helixtrans-62.3-41.3179.3-61.4172.7000110.5Q20 E21 V22I18-Q20 VanDerWaalsContact C-N 3.28Å; I18-Q20 PolarHBondContact O-N 3.45Å; I18-E21 PolarHBondContact O-N 3.41Å; I18-V22 PolarHBondContact O-N 3.38Å; I18-V22 WeakPolarHBondContact O-CG2 3.4Å
19L52.1Low52.3Low119 Ų119124 Ų12462%0.62364%0.635SS**Hα-helixtrans-64-33.7177.5-69.6176.8000112.4E15 Q17 Q23E15-L19 PolarHBondContact O-N 3.25Å; Q17-L19 VanDerWaalsContact C-N 3.31Å; Q17-L19 PolarHBondContact O-N 3.35Å; L19-Q23 WeakPolarHBondContact O-CB 3.41Å; L19-Q23 PolarHBondContact O-N 3.13Å
20Q53.2Low52.7Low114 Ų114123.8 Ų123.853%0.53363%0.625SS.*Hα-helixtrans-72.6-42.2177.7-70.4179.417.600112.2N16 Q17 I18 V22 Q23 H24N16-Q20 WeakPolarHBondContact O-CG 3.43Å; N16-Q20 PolarHBondContact O-N 3.49Å; Q17-Q20 PolarHBondContact O-N 3.45Å; Q17-Q20 VanDerWaalsContact O-N 3.11Å; I18-Q20 VanDerWaalsContact C-N 3.28Å; I18-Q20 PolarHBondContact O-N 3.45Å; Q20-V22 PolarHBondContact O-N 3.11Å; Q20-Q23 PolarHBondContact O-N 2.99Å; Q20-Q23 VanDerWaalsContact O-N 3.14Å; Q20-H24 PolarHBondContact O-CD2 3.46Å; Q20-H24 PolarHBondContact O-N 3.14Å
21E52.9Low52.9Low149 Ų149124.4 Ų124.470%0.69661%0.614SS**Hα-helixtrans-62.8-43179.3-73.9-172.2171.600112.2Q17 I18 Q23 H24 G25Q17-E21 PolarHBondContact O-N 3.21Å; Q17-E21 VanDerWaalsContact O-N 3.07Å; I18-E21 PolarHBondContact O-N 3.41Å; E21-Q23 PolarHBondContact O-N 3.05Å; E21-H24 PolarHBondContact O-N 3.07Å; E21-G25 PolarHBondContact O-N 3.33Å
22V53Low53.1Low84 Ų84119.2 Ų119.251%0.50959%0.594SS.*Hα-helixtrans-64.1-34.2176.2178.70000110.8I18 Q20I18-V22 PolarHBondContact O-N 3.38Å; I18-V22 WeakPolarHBondContact O-CG2 3.4Å; Q20-V22 PolarHBondContact O-N 3.11Å
23Q51.7Low53Low109 Ų109115.1 Ų115.151%0.50958%0.581SS.*Hα-helixtrans-76.3-28.6-179.8-142.8176.122.300113.4L19 Q20 E21 R27L19-Q23 WeakPolarHBondContact O-CB 3.41Å; L19-Q23 PolarHBondContact O-N 3.13Å; Q20-Q23 PolarHBondContact O-N 2.99Å; Q20-Q23 VanDerWaalsContact O-N 3.14Å; E21-Q23 PolarHBondContact O-N 3.05Å; Q23-R27 WeakPolarHBondContact O-CD 3.09Å; Q23-R27 WeakPolarHBondContact O-CG 2.95Å
24H49.6Very low53.3Low131 Ų131116.2 Ų116.261%0.60658%0.582SS**Hα-helixtrans-90-33.8-179.6-72-62.9000113.8Q20 E21Q20-H24 PolarHBondContact O-CD2 3.46Å; Q20-H24 PolarHBondContact O-N 3.14Å; E21-H24 PolarHBondContact O-N 3.07Å
25G52.3Low53.6Low60 Ų60117.6 Ų117.662%0.61958%0.579SS**Hα-helixtrans-70.2-36.5-176.800000114.2E21E21-G25 PolarHBondContact O-N 3.33Å
26Q52.9Low54.5Low139 Ų139121.4 Ų121.465%0.6560%0.597SS**SBendtrans-97.2-14.2-172.1-65.1-174.2-15.700114.5K28 D29Q26-K28 VanDerWaalsContact C-N 3.32Å; Q26-K28 PolarHBondContact O-N 3.26Å; Q26-D29 PolarHBondContact O-N 3.1Å
27R48.8Very low55.5Low173 Ų173122.4 Ų122.465%0.65360%0.603SS**THydrogen-bonded Turntrans-69.3-24.8-176.1-82.2176.799.2150.26.7114.3Q23 D29Q23-R27 WeakPolarHBondContact O-CD 3.09Å; Q23-R27 WeakPolarHBondContact O-CG 2.95Å; R27-D29 PolarHBondContact O-N 3.09Å
28K54.5Low56Low193 Ų193118.9 Ų118.984%0.83960%0.599SS**THydrogen-bonded Turntrans-70.1-23.3-179.8-71.1-171.7178.5-179.60113Q26Q26-K28 VanDerWaalsContact C-N 3.32Å; Q26-K28 PolarHBondContact O-N 3.26Å
29D53.1Low56.2Low102 Ų102119.2 Ų119.255%0.54560%0.601SS.*THydrogen-bonded Turntrans-106-9.3-168.5-90.225.6000114.5Q26 R27 E31 K45Q26-D29 PolarHBondContact O-N 3.1Å; R27-D29 PolarHBondContact O-N 3.09Å; D29-E31 PolarHBondContact O-N 3.23Å; D29-K45 VanDerWaalsContact CG-NZ 3.34Å; D29-K45 IonicContact OD2-NZ 2.78Å; D29-K45 PolarHBondContact OD2-NZ 2.75Å
30L56Low56.3Low109 Ų109117.6 Ų117.657%0.57160%0.597SS**  trans-89.780.2173.1-126.286.7000108.6V32L30-V32 PolarHBondContact O-N 2.89Å; L30-V32 HydrophobicContact CB-CG2 3.94Å; L30-V32 WeakPolarHBondContact O-CG2 3.5Å; L30-V32 HydrophobicContact CD2-CG2 3.77Å; L30-V32 HydrophobicContact CG-CG2 4.1Å; L30-V32 VanDerWaalsContact C-N 3.27Å
31E56.9Low56.3Low129 Ų129121.4 Ų121.460%0.60361%0.606SS**  trans-65.597.3160.1-166.2-177.9176.600106.9D29 H33 S43D29-E31 PolarHBondContact O-N 3.23Å; E31-H33 VanDerWaalsContact CD-CE1 3.44Å; E31-H33 WeakPolarHBondContact CG-NE2 3.21Å; E31-H33 PolarHBondContact O-N 2.91Å; E31-H33 IonicContact OE1-CD2 3.8Å; E31-H33 IonicContact OE1-CE1 3.47Å; E31-H33 PolarHBondContact OE1-CE1 3.23Å; E31-H33 IonicContact OE1-NE2 2.75Å; E31-H33 PolarHBondContact OE1-NE2 3.27Å; E31-H33 IonicContact OE2-CE1 3.79Å; E31-H33 IonicContact OE2-NE2 3.85Å; E31-S43 WeakPolarHBondContact O-CB 3.34Å
32V58.8Low56.6Low55 Ų55118.6 Ų118.633%0.33360%0.601SS.*EExtended strand (participates in β ladder)trans-94.199.5-178.5-148.60000108.3L30 K34 T40 R41L30-V32 PolarHBondContact O-N 2.89Å; L30-V32 HydrophobicContact CB-CG2 3.94Å; L30-V32 WeakPolarHBondContact O-CG2 3.5Å; L30-V32 HydrophobicContact CD2-CG2 3.77Å; L30-V32 HydrophobicContact CG-CG2 4.1Å; L30-V32 VanDerWaalsContact C-N 3.27Å; V32-K34 PolarHBondContact O-N 3.48Å; V32-T40 HydrophobicContact CB-CG2 3.71Å; V32-T40 HydrophobicContact CG1-CG2 3.19Å; V32-R41 WeakPolarHBondContact CG1-O 3.26Å
33H54.6Low56.8Low101 Ų101117.2 Ų117.247%0.46860%0.595SS.*EExtended strand (participates in β ladder)trans-71.8121.8172.3-58.7111.1000109.1E31 R41E31-H33 VanDerWaalsContact CD-CE1 3.44Å; E31-H33 WeakPolarHBondContact CG-NE2 3.21Å; E31-H33 PolarHBondContact O-N 2.91Å; E31-H33 IonicContact OE1-CD2 3.8Å; E31-H33 IonicContact OE1-CE1 3.47Å; E31-H33 PolarHBondContact OE1-CE1 3.23Å; E31-H33 IonicContact OE1-NE2 2.75Å; E31-H33 PolarHBondContact OE1-NE2 3.27Å; E31-H33 IonicContact OE2-CE1 3.79Å; E31-H33 IonicContact OE2-NE2 3.85Å; H33-R41 PolarHBondContact O-N 3Å
34K55.7Low57.2Low158 Ų158121.1 Ų121.169%0.68761%0.61SS**EExtended strand (participates in β ladder)trans-77.5127.9169.8-67.5-177.5-179.5-177.80108V32 T40V32-K34 PolarHBondContact O-N 3.48Å; K34-T40 HydrophobicContact CG-CG2 4.02Å
35N60.9Low57.6Low73 Ų73119.8 Ų119.839%0.3960%0.603SS.*PPolyproline II helixtrans-75173.3168.667.519.6000110.5N37 G38 L39N35-N37 PolarHBondContact O-N 3.35Å; N35-N37 PolarHBondContact OD1-N 3.39Å; N35-N37 VanDerWaalsContact OD1-N 3.14Å; N35-G38 PolarHBondContact OD1-N 3.39Å; N35-G38 PolarHBondContact O-N 3.43Å; N35-L39 PolarHBondContact N-O 3.46Å; N35-L39 VanDerWaalsContact N-O 3.1Å; N35-L39 PolarHBondContact OD1-N 3.14Å; N35-L39 VanDerWaalsContact OD1-N 3.09Å; N35-L39 PolarHBondContact OD1-O 2.92Å
36Q73.4Confident57.6Low202 Ų202125.6 Ų125.694%0.94461%0.614SS**THydrogen-bonded Turntrans-58.8-17.5-178.1-67.2178.2-17.300114G38Q36-G38 VanDerWaalsContact C-N 3.34Å
37N70.5Confident57.9Low138 Ų138128.2 Ų128.274%0.73862%0.619SS**THydrogen-bonded Turntrans-94.19.6177.3-61.2-10.4000112.4N35 L39N35-N37 PolarHBondContact O-N 3.35Å; N35-N37 PolarHBondContact OD1-N 3.39Å; N35-N37 VanDerWaalsContact OD1-N 3.14Å; N37-L39 PolarHBondContact O-N 3.34Å
38G62Low58.2Low49 Ų49124.2 Ų124.251%0.50562%0.617SS.*SBendtrans73.64.6179.100000114.8N35 Q36N35-G38 PolarHBondContact OD1-N 3.39Å; N35-G38 PolarHBondContact O-N 3.43Å; Q36-G38 VanDerWaalsContact C-N 3.34Å
39L56.7Low58.3Low116 Ų116122.5 Ų122.561%0.60762%0.618SS**  trans-86.3127.1178.5-62173.6000109.8N35 N37 R41N35-L39 PolarHBondContact N-O 3.46Å; N35-L39 VanDerWaalsContact N-O 3.1Å; N35-L39 PolarHBondContact OD1-N 3.14Å; N35-L39 VanDerWaalsContact OD1-N 3.09Å; N35-L39 PolarHBondContact OD1-O 2.92Å; N37-L39 PolarHBondContact O-N 3.34Å; L39-R41 PolarHBondContact O-N 2.93Å
40T55Low58.4Low86 Ų86130 Ų13053%0.52865%0.646SS.*EExtended strand (participates in β ladder)trans-72.6119.4176.416.90000109.9V32 K34V32-T40 HydrophobicContact CB-CG2 3.71Å; V32-T40 HydrophobicContact CG1-CG2 3.19Å; K34-T40 HydrophobicContact CG-CG2 4.02Å
41R52.3Low58.5Low193 Ų193131.1 Ų131.173%0.72865%0.649SS**EExtended strand (participates in β ladder)trans-105.7129.1171.5-140.7174.7-176.2-173.30.2108.6V32 H33 L39 S43V32-R41 WeakPolarHBondContact CG1-O 3.26Å; H33-R41 PolarHBondContact O-N 3Å; L39-R41 PolarHBondContact O-N 2.93Å; R41-S43 PolarHBondContact O-N 2.93Å
42P59.5Low58.6Low91 Ų91131.2 Ų131.259%0.59165%0.652SS**EExtended strand (participates in β ladder)trans-60.2126.8174.317.3-23.5000109.1K44P42-K44 PolarHBondContact O-N 2.78Å
43S56.9Low58.6Low55 Ų55135.4 Ų135.439%0.38567%0.669SS.*  trans-56.3119.6168.4162.70000107.7E31 R41 K45E31-S43 WeakPolarHBondContact O-CB 3.34Å; R41-S43 PolarHBondContact O-N 2.93Å; S43-K45 PolarHBondContact O-N 3.19Å; S43-K45 VanDerWaalsContact C-N 3.27Å
44K61.5Low58.8Low191 Ų191137.5 Ų137.583%0.8368%0.681SS**  trans-69.294.2169.5-71.1-174.3177.9-176.30105.8P42 E46P42-K44 PolarHBondContact O-N 2.78Å; K44-E46 VanDerWaalsContact C-N 3.3Å; K44-E46 PolarHBondContact O-N 3.26Å
45K56.6Low59Low103 Ų103136.2 Ų136.245%0.44868%0.681SS.*  trans-59.6103.7159.7-80-173.7177.6-174.90105.5D29 S43 Y47D29-K45 VanDerWaalsContact CG-NZ 3.34Å; D29-K45 IonicContact OD2-NZ 2.78Å; D29-K45 PolarHBondContact OD2-NZ 2.75Å; S43-K45 PolarHBondContact O-N 3.19Å; S43-K45 VanDerWaalsContact C-N 3.27Å; K45-Y47 VanDerWaalsContact C-N 3.29Å; K45-Y47 HydrophobicContact CB-CE2 4.38Å; K45-Y47 VanDerWaalsContact O-CD2 3.26Å; K45-Y47 WeakPolarHBondContact O-CD2 3.49Å; K45-Y47 PolarHBondContact O-N 3.47Å
46E54.3Low58.9Low181 Ų181140.4 Ų140.485%0.84670%0.7SS**  trans-63.6100.1168.1-70.7-177.9-179.300106K44 S48K44-E46 VanDerWaalsContact C-N 3.3Å; K44-E46 PolarHBondContact O-N 3.26Å; E46-S48 PolarHBondContact O-N 2.93Å
47Y58.8Low57.8Low195 Ų195136 Ų13677%0.76568%0.683SS**  trans-65.189.5164.9-65.8-87.7000106K45 N49K45-Y47 VanDerWaalsContact C-N 3.29Å; K45-Y47 HydrophobicContact CB-CE2 4.38Å; K45-Y47 VanDerWaalsContact O-CD2 3.26Å; K45-Y47 WeakPolarHBondContact O-CD2 3.49Å; K45-Y47 PolarHBondContact O-N 3.47Å; Y47-N49 VanDerWaalsContact C-N 3.28Å; Y47-N49 PolarHBondContact O-N 2.91Å
48S54.6Low56.8Low88 Ų88135.8 Ų135.862%0.61568%0.679SS**  trans-65.794.1169.2171.20000107E46 K50E46-S48 PolarHBondContact O-N 2.93Å; S48-K50 PolarHBondContact O-N 2.82Å
49N56.5Low56.4Low158 Ų158143.1 Ų143.185%0.84569%0.693SS**  trans-68.887165.5-71.3-14.1000107.8Y47Y47-N49 VanDerWaalsContact C-N 3.28Å; Y47-N49 PolarHBondContact O-N 2.91Å
50K54.5Low56.4Low260 Ų260145.5 Ų145.5100%1.1370%0.701SS**  trans-107.60157.4-81.2-171.7177.5-176.40107.6S48S48-K50 PolarHBondContact O-N 2.82Å

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