G4VJH4_SCHMA Loading...

Smp_202580 AlphaSync

AlphaFold DB , UniProt , Accession G4VJH4, Species SCHMA (Schistosoma mansoni, Blood fluke), Gene n/a, Length 35 aa.

						>G4VJH4_SCHMA|G4VJH4
MYKRHLSEPSNDAKYDSYNKCRWYQQDIVQIVHNW
					

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(Predicted Aligned Error values between residue pairs)

Download Structure AlphaSync Parameters PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	49	Very low	59.5	Low	237 Å²	237	161.9 Å²	161.9	100%	1.167	79%	0.792	S	S	*	*				0	111.3	0	-81.6	-175.1	173.6	0	0	108.4	K3	M1-K3 PolarHBondContact O-N 3.41Å; M1-K3 VanDerWaalsContact O-N 3.11Å
2	Y	47.1	Very low	59.9	Low	245 Å²	245	158.4 Å²	158.4	96%	0.961	78%	0.779	S	S	*	*			trans	-67.7	107.2	170.2	-77.9	-88.3	0	0	0	108.1	R4	Y2-R4 PolarHBondContact O-N 3.07Å; Y2-R4 VanDerWaalsContact O-N 3.08Å
3	K	60	Low	60.3	Low	184 Å²	184	150.5 Å²	150.5	80%	0.8	75%	0.754	S	S	*	*			trans	-70.6	102.7	168.7	-71.5	-172.4	179.3	-178.3	0	106.7	M1 H5	M1-K3 PolarHBondContact O-N 3.41Å; M1-K3 VanDerWaalsContact O-N 3.11Å; K3-H5 VanDerWaalsContact C-N 3.33Å; K3-H5 PolarHBondContact O-N 3.46Å
4	R	66.9	Low	60.5	Low	217 Å²	217	151 Å²	151	82%	0.819	75%	0.749	S	S	*	*			trans	-62.4	100.8	164.1	177.4	163.6	37.7	177.6	-7.6	105.8	Y2 L6	Y2-R4 PolarHBondContact O-N 3.07Å; Y2-R4 VanDerWaalsContact O-N 3.08Å; R4-L6 PolarHBondContact O-N 2.93Å
5	H	59	Low	61.2	Low	171 Å²	171	149.5 Å²	149.5	79%	0.792	73%	0.733	S	S	*	*			trans	-57.2	99.2	167	-77.7	-91.5	0	0	0	105.8	K3 S7	K3-H5 VanDerWaalsContact C-N 3.33Å; K3-H5 PolarHBondContact O-N 3.46Å; H5-S7 PolarHBondContact O-N 3.19Å
6	L	61.7	Low	62.2	Low	153 Å²	153	145 Å²	145	80%	0.801	71%	0.713	S	S	*	*			trans	-64.2	96.9	160.9	-69	167.2	0	0	0	103.2	R4 E8	R4-L6 PolarHBondContact O-N 2.93Å; L6-E8 PolarHBondContact O-N 3.29Å
7	S	63.1	Low	63.2	Low	104 Å²	104	140.5 Å²	140.5	73%	0.727	70%	0.699	S	S	*	*			trans	-46.9	120.3	167.4	-47.8	0	0	0	0	105.8	H5	H5-S7 PolarHBondContact O-N 3.19Å
8	E	63.4	Low	64.1	Low	171 Å²	171	141.9 Å²	141.9	80%	0.799	70%	0.697	S	S	*	*			trans	-45.1	139.7	170.7	-63.2	178.2	133.7	0	0	107.2	L6 S10	L6-E8 PolarHBondContact O-N 3.29Å; E8-S10 VanDerWaalsContact C-N 3.34Å; E8-S10 PolarHBondContact O-N 2.96Å
9	P	62.9	Low	65	Low	116 Å²	116	138.1 Å²	138.1	75%	0.753	68%	0.68	S	S	*	*			trans	-52.4	108.3	177.8	21.7	-30.8	0	0	0	106.5	N11	P9-N11 PolarHBondContact O-N 3.25Å
10	S	60.2	Low	66	Low	66 Å²	66	136.2 Å²	136.2	46%	0.462	67%	0.667	S	S	.	*			trans	-50.4	139.2	-177.5	-46.3	0	0	0	0	105.9	E8 D12 A13	E8-S10 VanDerWaalsContact C-N 3.34Å; E8-S10 PolarHBondContact O-N 2.96Å; S10-D12 CarbonylContact O-C 3.57Å; S10-D12 PolarHBondContact O-N 3.31Å; S10-A13 WeakPolarHBondContact O-CB 3.46Å; S10-A13 PolarHBondContact O-N 2.99Å
11	N	61.1	Low	67	Low	117 Å²	117	133.7 Å²	133.7	63%	0.626	66%	0.663	S	S	*	*	H	α-helix	trans	-44.9	-32.3	176.9	-119	-3.6	0	0	0	111	P9 A13 K14 Y15	P9-N11 PolarHBondContact O-N 3.25Å; N11-A13 VanDerWaalsContact C-N 3.34Å; N11-A13 PolarHBondContact O-N 2.99Å; N11-K14 WeakPolarHBondContact O-CB 3.28Å; N11-K14 PolarHBondContact O-N 3.4Å; N11-K14 VanDerWaalsContact O-N 3.12Å; N11-Y15 HydrophobicContact CB-CD2 4.46Å; N11-Y15 HydrophobicContact CB-CE2 4.12Å; N11-Y15 WeakPolarHBondContact O-CD2 3.22Å; N11-Y15 PolarHBondContact O-N 3.11Å
12	D	64.4	Low	68.9	Low	120 Å²	120	129.5 Å²	129.5	64%	0.642	63%	0.634	S	S	*	*	H	α-helix	trans	-49.2	-37.7	170.4	-57.4	-28.6	0	0	0	115.9	S10 K14 Y15 D16	S10-D12 CarbonylContact O-C 3.57Å; S10-D12 PolarHBondContact O-N 3.31Å; D12-K14 VanDerWaalsContact C-N 3.35Å; D12-K14 PolarHBondContact O-N 3.48Å; D12-Y15 CarbonylContact O-C 3.57Å; D12-Y15 PolarHBondContact O-N 3.18Å; D12-D16 WeakPolarHBondContact O-CB 3.33Å; D12-D16 PolarHBondContact O-N 2.98Å
13	A	65.4	Low	70.9	Confident	55 Å²	55	125.5 Å²	125.5	46%	0.455	62%	0.617	S	S	.	*	H	α-helix	trans	-69.4	-32.4	178.7	0	0	0	0	0	112.4	S10 N11 D16	S10-A13 WeakPolarHBondContact O-CB 3.46Å; S10-A13 PolarHBondContact O-N 2.99Å; N11-A13 VanDerWaalsContact C-N 3.34Å; N11-A13 PolarHBondContact O-N 2.99Å; A13-D16 PolarHBondContact O-N 3.45Å
14	K	62.9	Low	72.3	Confident	158 Å²	158	123.5 Å²	123.5	69%	0.687	61%	0.606	S	S	*	*	H	α-helix	trans	-69	-41.7	173	-171.7	177.9	178.5	-179.2	0	110.2	N11 D12 S17	N11-K14 WeakPolarHBondContact O-CB 3.28Å; N11-K14 PolarHBondContact O-N 3.4Å; N11-K14 VanDerWaalsContact O-N 3.12Å; D12-K14 VanDerWaalsContact C-N 3.35Å; D12-K14 PolarHBondContact O-N 3.48Å; K14-S17 PolarHBondContact O-OG 3.18Å
15	Y	70.6	Confident	73.3	Confident	129 Å²	129	119.7 Å²	119.7	51%	0.506	60%	0.597	S	S	.	*	H	α-helix	trans	-70.2	-29.1	175.9	-65.9	-69.7	0	0	0	113.1	N11 D12 Y18 N19	N11-Y15 HydrophobicContact CB-CD2 4.46Å; N11-Y15 HydrophobicContact CB-CE2 4.12Å; N11-Y15 WeakPolarHBondContact O-CD2 3.22Å; N11-Y15 PolarHBondContact O-N 3.11Å; D12-Y15 CarbonylContact O-C 3.57Å; D12-Y15 PolarHBondContact O-N 3.18Å; Y15-Y18 PolarHBondContact O-N 2.67Å; Y15-N19 VanDerWaalsContact O-CB 3.24Å; Y15-N19 WeakPolarHBondContact O-CB 3.45Å; Y15-N19 PolarHBondContact O-N 3.29Å; Y15-N19 PolarHBondContact O-ND2 3.13Å
16	D	78.1	Confident	74.8	Confident	77 Å²	77	116 Å²	116	41%	0.412	58%	0.58	S	S	.	*	H	α-helix	trans	-61.3	-45.6	176.9	-178.1	62.1	0	0	0	111.6	D12 A13 N19 K20	D12-D16 WeakPolarHBondContact O-CB 3.33Å; D12-D16 PolarHBondContact O-N 2.98Å; A13-D16 PolarHBondContact O-N 3.45Å; D16-N19 PolarHBondContact O-N 3.42Å; D16-K20 WeakPolarHBondContact O-CB 3.21Å; D16-K20 VanDerWaalsContact O-CG 3.26Å; D16-K20 WeakPolarHBondContact O-CG 3.26Å; D16-K20 PolarHBondContact O-N 3.04Å; D16-K20 IonicContact OD1-NZ 3.73Å; D16-K20 WeakPolarHBondContact OD2-CE 3.41Å; D16-K20 IonicContact OD2-NZ 2.67Å; D16-K20 PolarHBondContact OD2-NZ 3.35Å
17	S	77.8	Confident	76.2	Confident	69 Å²	69	112.6 Å²	112.6	48%	0.483	56%	0.563	S	S	.	*	H	α-helix	trans	-63.6	-43.5	176.5	69.9	0	0	0	0	112.8	K14 K20 C21	K14-S17 PolarHBondContact O-OG 3.18Å; S17-K20 PolarHBondContact O-N 3.11Å; S17-C21 PolarHBondContact O-N 2.99Å; S17-C21 VanDerWaalsContact O-N 3.13Å; S17-C21 PolarHBondContact O-SG 3.44Å
18	Y	80.3	Confident	77.5	Confident	165 Å²	165	112.6 Å²	112.6	65%	0.647	55%	0.553	S	S	*	*	H	α-helix	trans	-66.8	-42.4	179.1	-174.2	-95.1	0	0	0	111.7	Y15 C21 R22	Y15-Y18 PolarHBondContact O-N 2.67Å; Y18-C21 PolarHBondContact O-N 3.37Å; Y18-R22 PolarHBondContact O-N 3.12Å; Y18-R22 VanDerWaalsContact O-N 3.12Å
19	N	80.6	Confident	78.7	Confident	70 Å²	70	107.9 Å²	107.9	37%	0.374	54%	0.536	S	S	.	.	H	α-helix	trans	-63.8	-43.1	176.5	-74.3	-23	0	0	0	111	Y15 D16 C21 R22 W23	Y15-N19 VanDerWaalsContact O-CB 3.24Å; Y15-N19 WeakPolarHBondContact O-CB 3.45Å; Y15-N19 PolarHBondContact O-N 3.29Å; Y15-N19 PolarHBondContact O-ND2 3.13Å; D16-N19 PolarHBondContact O-N 3.42Å; N19-C21 PolarHBondContact O-N 3.3Å; N19-R22 WeakPolarHBondContact O-CB 3.28Å; N19-R22 PolarHBondContact O-N 3.17Å; N19-R22 VanDerWaalsContact O-N 3.17Å; N19-W23 PolarHBondContact O-N 3.4Å
20	K	85.4	Confident	80	Confident	99 Å²	99	108.6 Å²	108.6	43%	0.43	53%	0.53	S	S	.	.	H	α-helix	trans	-56.5	-48.8	175.2	-79.1	170	177.1	168	0	112.1	D16 S17 R22 W23 Y24	D16-K20 WeakPolarHBondContact O-CB 3.21Å; D16-K20 VanDerWaalsContact O-CG 3.26Å; D16-K20 WeakPolarHBondContact O-CG 3.26Å; D16-K20 PolarHBondContact O-N 3.04Å; D16-K20 IonicContact OD1-NZ 3.73Å; D16-K20 WeakPolarHBondContact OD2-CE 3.41Å; D16-K20 IonicContact OD2-NZ 2.67Å; D16-K20 PolarHBondContact OD2-NZ 3.35Å; S17-K20 PolarHBondContact O-N 3.11Å; K20-R22 VanDerWaalsContact C-N 3.29Å; K20-R22 PolarHBondContact O-N 3.45Å; K20-W23 PolarHBondContact O-N 3.2Å; K20-Y24 HydrophobicContact CB-CD2 4.44Å; K20-Y24 HydrophobicContact CB-CE2 4.06Å; K20-Y24 WeakPolarHBondContact O-CD2 3.01Å; K20-Y24 PolarHBondContact O-N 2.98Å
21	C	87.4	Confident	81.4	Confident	85 Å²	85	110 Å²	110	57%	0.574	53%	0.531	S	S	*	.	H	α-helix	trans	-57.8	-42	176.6	-69.6	0	0	0	0	112.4	S17 Y18 N19 Y24 Q25	S17-C21 PolarHBondContact O-N 2.99Å; S17-C21 VanDerWaalsContact O-N 3.13Å; S17-C21 PolarHBondContact O-SG 3.44Å; Y18-C21 PolarHBondContact O-N 3.37Å; N19-C21 PolarHBondContact O-N 3.3Å; C21-Y24 PolarHBondContact O-N 2.97Å; C21-Q25 WeakPolarHBondContact O-CB 3.49Å; C21-Q25 PolarHBondContact O-N 2.94Å
22	R	89.1	Confident	82.9	Confident	149 Å²	149	109 Å²	109	56%	0.562	53%	0.529	S	S	*	.	H	α-helix	trans	-62.2	-44.2	176.8	-177.8	-177.8	174	176.4	0.1	112.1	Y18 N19 K20 Q25 Q26	Y18-R22 PolarHBondContact O-N 3.12Å; Y18-R22 VanDerWaalsContact O-N 3.12Å; N19-R22 WeakPolarHBondContact O-CB 3.28Å; N19-R22 PolarHBondContact O-N 3.17Å; N19-R22 VanDerWaalsContact O-N 3.17Å; K20-R22 VanDerWaalsContact C-N 3.29Å; K20-R22 PolarHBondContact O-N 3.45Å; R22-Q25 PolarHBondContact O-N 3.5Å; R22-Q26 WeakPolarHBondContact O-CG 3.44Å; R22-Q26 PolarHBondContact O-N 3.36Å
23	W	88	Confident	84.1	Confident	161 Å²	161	110.6 Å²	110.6	61%	0.61	53%	0.532	S	S	*	.	H	α-helix	trans	-60.9	-49.1	176.5	-72.2	115.4	0	0	0	111.4	N19 K20 Q25 Q26 D27	N19-W23 PolarHBondContact O-N 3.4Å; K20-W23 PolarHBondContact O-N 3.2Å; W23-Q25 VanDerWaalsContact C-N 3.29Å; W23-Q25 PolarHBondContact O-N 3.43Å; W23-Q26 PolarHBondContact O-N 3.42Å; W23-Q26 VanDerWaalsContact O-N 3.11Å; W23-D27 PolarHBondContact O-N 3.29Å
24	Y	89.2	Confident	84.9	Confident	142 Å²	142	114.4 Å²	114.4	56%	0.557	55%	0.545	S	S	*	.	H	α-helix	trans	-60.1	-37.8	177.8	-67.5	-53.3	0	0	0	112.9	K20 C21 Q26 D27 I28	K20-Y24 HydrophobicContact CB-CD2 4.44Å; K20-Y24 HydrophobicContact CB-CE2 4.06Å; K20-Y24 WeakPolarHBondContact O-CD2 3.01Å; K20-Y24 PolarHBondContact O-N 2.98Å; C21-Y24 PolarHBondContact O-N 2.97Å; Y24-Q26 VanDerWaalsContact C-N 3.34Å; Y24-Q26 PolarHBondContact O-N 2.91Å; Y24-D27 PolarHBondContact O-N 3.47Å; Y24-I28 WeakPolarHBondContact O-CD1 3.38Å; Y24-I28 VanDerWaalsContact O-CG1 3.22Å; Y24-I28 WeakPolarHBondContact O-CG1 3.49Å; Y24-I28 PolarHBondContact O-N 3.25Å
25	Q	89.6	Confident	86	Confident	136 Å²	136	120 Å²	120	64%	0.636	56%	0.562	S	S	*	*	H	α-helix	trans	-63.5	-40.3	176.9	-174.2	177.2	-0.6	0	0	111.9	C21 R22 W23 V29	C21-Q25 WeakPolarHBondContact O-CB 3.49Å; C21-Q25 PolarHBondContact O-N 2.94Å; R22-Q25 PolarHBondContact O-N 3.5Å; W23-Q25 VanDerWaalsContact C-N 3.29Å; W23-Q25 PolarHBondContact O-N 3.43Å; Q25-V29 VanDerWaalsContact O-CG2 3.28Å; Q25-V29 WeakPolarHBondContact O-CG2 3.24Å; Q25-V29 PolarHBondContact O-N 3.12Å; Q25-V29 VanDerWaalsContact O-N 3.11Å
26	Q	89.1	Confident	86.7	Confident	93 Å²	93	119.5 Å²	119.5	44%	0.435	56%	0.564	S	S	.	*	H	α-helix	trans	-66.1	-43.9	176.9	-70	179.6	-42.4	0	0	111.5	R22 W23 Y24 I28 V29 Q30	R22-Q26 WeakPolarHBondContact O-CG 3.44Å; R22-Q26 PolarHBondContact O-N 3.36Å; W23-Q26 PolarHBondContact O-N 3.42Å; W23-Q26 VanDerWaalsContact O-N 3.11Å; Y24-Q26 VanDerWaalsContact C-N 3.34Å; Y24-Q26 PolarHBondContact O-N 2.91Å; Q26-I28 VanDerWaalsContact C-N 3.35Å; Q26-I28 PolarHBondContact O-N 2.85Å; Q26-V29 PolarHBondContact O-N 3.49Å; Q26-Q30 PolarHBondContact O-N 2.75Å
27	D	90.7	Very high	87.2	Confident	83 Å²	83	121.7 Å²	121.7	44%	0.444	57%	0.572	S	S	.	*	H	α-helix	trans	-60.2	-44.2	177.3	-69	-22	0	0	0	111.5	W23 Y24 Q30 I31	W23-D27 PolarHBondContact O-N 3.29Å; Y24-D27 PolarHBondContact O-N 3.47Å; D27-Q30 PolarHBondContact O-N 2.78Å; D27-I31 WeakPolarHBondContact O-CD1 3.44Å; D27-I31 VanDerWaalsContact O-CG1 3.28Å; D27-I31 WeakPolarHBondContact O-CG1 3.49Å; D27-I31 PolarHBondContact O-N 3.3Å
28	I	90.2	Very high	87.7	Confident	103 Å²	103	124.7 Å²	124.7	53%	0.528	58%	0.577	S	S	.	*	H	α-helix	trans	-62.4	-45.4	177.9	-69	164.7	0	0	0	111.1	Y24 Q26 Q30 I31 V32	Y24-I28 WeakPolarHBondContact O-CD1 3.38Å; Y24-I28 VanDerWaalsContact O-CG1 3.22Å; Y24-I28 WeakPolarHBondContact O-CG1 3.49Å; Y24-I28 PolarHBondContact O-N 3.25Å; Q26-I28 VanDerWaalsContact C-N 3.35Å; Q26-I28 PolarHBondContact O-N 2.85Å; I28-Q30 VanDerWaalsContact C-N 3.29Å; I28-Q30 PolarHBondContact O-N 2.95Å; I28-I31 PolarHBondContact O-N 2.84Å; I28-V32 HydrophobicContact CG2-CG2 4.3Å; I28-V32 WeakPolarHBondContact O-CG2 3Å; I28-V32 PolarHBondContact O-N 3.11Å
29	V	89.9	Confident	88.2	Confident	72 Å²	72	122.3 Å²	122.3	44%	0.436	57%	0.573	S	S	.	*	H	α-helix	trans	-62.8	-38	178.6	170.3	0	0	0	0	111.5	Q25 Q26 H33	Q25-V29 VanDerWaalsContact O-CG2 3.28Å; Q25-V29 WeakPolarHBondContact O-CG2 3.24Å; Q25-V29 PolarHBondContact O-N 3.12Å; Q25-V29 VanDerWaalsContact O-N 3.11Å; Q26-V29 PolarHBondContact O-N 3.49Å; V29-H33 PolarHBondContact O-N 3.08Å; V29-H33 PolarHBondContact O-ND1 2.71Å
30	Q	88.9	Confident	88.6	Confident	132 Å²	132	125.6 Å²	125.6	62%	0.617	59%	0.586	S	S	*	*	H	α-helix	trans	-67.9	-38.8	176.4	-177.8	175.8	-39	0	0	112	Q26 D27 I28 N34	Q26-Q30 PolarHBondContact O-N 2.75Å; D27-Q30 PolarHBondContact O-N 2.78Å; I28-Q30 VanDerWaalsContact C-N 3.29Å; I28-Q30 PolarHBondContact O-N 2.95Å; Q30-N34 PolarHBondContact O-ND2 3.05Å
31	I	91.2	Very high	88.9	Confident	96 Å²	96	127.3 Å²	127.3	49%	0.492	60%	0.596	S	S	.	*	H	α-helix	trans	-64.7	-51.9	175.5	-68.9	160.6	0	0	0	109.6	D27 I28 H33 N34 W35	D27-I31 WeakPolarHBondContact O-CD1 3.44Å; D27-I31 VanDerWaalsContact O-CG1 3.28Å; D27-I31 WeakPolarHBondContact O-CG1 3.49Å; D27-I31 PolarHBondContact O-N 3.3Å; I28-I31 PolarHBondContact O-N 2.84Å; I31-H33 VanDerWaalsContact C-N 3.31Å; I31-H33 PolarHBondContact O-N 3.26Å; I31-N34 PolarHBondContact O-N 2.97Å; I31-W35 VanDerWaalsContact O-CD1 3.31Å; I31-W35 PolarHBondContact O-N 3.33Å
32	V	92	Very high	89	Confident	96 Å²	96	130.4 Å²	130.4	58%	0.582	60%	0.598	S	S	*	*	H	α-helix	trans	-61.9	-34.1	-175.2	172.2	0	0	0	0	113	I28 N34	I28-V32 HydrophobicContact CG2-CG2 4.3Å; I28-V32 WeakPolarHBondContact O-CG2 3Å; I28-V32 PolarHBondContact O-N 3.11Å; V32-N34 VanDerWaalsContact C-N 3.31Å; V32-N34 PolarHBondContact O-N 2.84Å
33	H	88.9	Confident	88.9	Confident	152 Å²	152	128.9 Å²	128.9	70%	0.704	60%	0.6	S	S	*	*	H	α-helix	trans	-73.2	-18.7	177	-81.2	112.4	0	0	0	114.5	V29 I31	V29-H33 PolarHBondContact O-N 3.08Å; V29-H33 PolarHBondContact O-ND1 2.71Å; I31-H33 VanDerWaalsContact C-N 3.31Å; I31-H33 PolarHBondContact O-N 3.26Å
34	N	82.7	Confident	89	Confident	135 Å²	135	126.3 Å²	126.3	72%	0.722	60%	0.599	S	S	*	*	H	α-helix	trans	-97.8	-4	-179.3	-76.4	-33.9	0	0	0	113.6	Q30 I31 V32	Q30-N34 PolarHBondContact O-ND2 3.05Å; I31-N34 PolarHBondContact O-N 2.97Å; V32-N34 VanDerWaalsContact C-N 3.31Å; V32-N34 PolarHBondContact O-N 2.84Å
35	W	85.9	Confident	89	Confident	275 Å²	275	124.8 Å²	124.8	100%	1.042	60%	0.603	S	S	*	*			trans	-93.4	0	172.2	-86	92.2	0	0	0	110.7	I31	I31-W35 VanDerWaalsContact O-CD1 3.31Å; I31-W35 PolarHBondContact O-N 3.33Å

Retrieved 35 of 35 residues in 12.6 ms (Link to these results)

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