LPW_SALTY Loading...

trp operon leader peptide AlphaSync

This protein is involved in control of the biosynthesis of tryptophan.

AlphaFold DB , UniProt , Accession P03054, Species SALTY (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)), Gene trpL, Length 14 aa.

						>LPW_SALTY|P03054|trpL
MAATFALHGWWRTS
					

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(Predicted Aligned Error values between residue pairs)

Download Structure AlphaSync Parameters PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	66.9	Low	75.9	Confident	180 Å²	180	120.2 Å²	120.2	89%	0.887	64%	0.637	S	S	*	*				0	-44.5	0	-168.2	153.1	-127.4	0	0	112.7	A3 T4 F5	M1-A3 PolarHBondContact O-N 2.89Å; M1-T4 PolarHBondContact O-N 3.12Å; M1-F5 HydrophobicContact CE-CZ 3.98Å; M1-F5 HydrophobicContact CG-CD2 3.75Å; M1-F5 HydrophobicContact CG-CE2 3.26Å; M1-F5 HydrophobicContact CG-CZ 4.3Å; M1-F5 WeakPolarHBondContact O-CD2 3.47Å; M1-F5 PolarHBondContact O-N 3.1Å; M1-F5 HydrophobicContact SD-CE2 3.94Å; M1-F5 HydrophobicContact CE-CE2 3.83Å
2	A	72.3	Confident	75.8	Confident	81 Å²	81	128.4 Å²	128.4	67%	0.669	65%	0.652	S	S	*	*	H	α-helix	trans	-58.9	-44	176.3	0	0	0	0	0	114.7	T4 F5 A6	A2-T4 PolarHBondContact O-N 2.94Å; A2-T4 VanDerWaalsContact C-N 3.34Å; A2-F5 PolarHBondContact O-N 3.12Å; A2-A6 WeakPolarHBondContact O-CB 3.41Å; A2-A6 PolarHBondContact O-N 3.18Å
3	A	72	Confident	75.6	Confident	78 Å²	78	127.5 Å²	127.5	65%	0.645	66%	0.657	S	S	*	*	H	α-helix	trans	-60.6	-39.7	-178	0	0	0	0	0	113.2	M1 L7	M1-A3 PolarHBondContact O-N 2.89Å; A3-L7 WeakPolarHBondContact O-CB 3.43Å; A3-L7 PolarHBondContact O-N 3.05Å
4	T	75.8	Confident	74.2	Confident	85 Å²	85	127.5 Å²	127.5	52%	0.521	67%	0.674	S	S	.	*	H	α-helix	trans	-67.7	-42.3	178.3	-43.9	0	0	0	0	111.9	M1 A2 L7 H8	M1-T4 PolarHBondContact O-N 3.12Å; A2-T4 PolarHBondContact O-N 2.94Å; A2-T4 VanDerWaalsContact C-N 3.34Å; T4-L7 PolarHBondContact O-N 2.61Å; T4-H8 PolarHBondContact O-N 2.8Å
5	F	75.3	Confident	74.2	Confident	136 Å²	136	127.5 Å²	127.5	60%	0.596	67%	0.674	S	S	*	*	H	α-helix	trans	-67	-41.1	176.5	-72.7	-60.8	0	0	0	112.2	M1 A2 G9	M1-F5 HydrophobicContact CE-CZ 3.98Å; M1-F5 HydrophobicContact CG-CD2 3.75Å; M1-F5 HydrophobicContact CG-CE2 3.26Å; M1-F5 HydrophobicContact CG-CZ 4.3Å; M1-F5 WeakPolarHBondContact O-CD2 3.47Å; M1-F5 PolarHBondContact O-N 3.1Å; M1-F5 HydrophobicContact SD-CE2 3.94Å; M1-F5 HydrophobicContact CE-CE2 3.83Å; A2-F5 PolarHBondContact O-N 3.12Å; F5-G9 WeakPolarHBondContact O-CA 3.5Å; F5-G9 PolarHBondContact O-N 3.06Å
6	A	77.9	Confident	74.2	Confident	64 Å²	64	127.5 Å²	127.5	53%	0.529	67%	0.674	S	S	.	*	H	α-helix	trans	-63.3	-42.4	174.9	0	0	0	0	0	111.3	A2 W10	A2-A6 WeakPolarHBondContact O-CB 3.41Å; A2-A6 PolarHBondContact O-N 3.18Å; A6-W10 WeakPolarHBondContact O-CB 3.06Å; A6-W10 PolarHBondContact O-N 3.41Å
7	L	81.1	Confident	74.2	Confident	128 Å²	128	127.5 Å²	127.5	67%	0.67	67%	0.674	S	S	*	*	H	α-helix	trans	-64.9	-49.3	-179.8	-153.2	89.6	0	0	0	112.2	A3 T4 W11	A3-L7 WeakPolarHBondContact O-CB 3.43Å; A3-L7 PolarHBondContact O-N 3.05Å; T4-L7 PolarHBondContact O-N 2.61Å; L7-W11 WeakPolarHBondContact O-CB 3.4Å; L7-W11 PolarHBondContact O-N 2.93Å
8	H	81.6	Confident	74.2	Confident	132 Å²	132	127.5 Å²	127.5	61%	0.611	67%	0.674	S	S	*	*	H	α-helix	trans	-70.8	-37.4	178.2	-73.9	167.8	0	0	0	112.7	T4 R12	T4-H8 PolarHBondContact O-N 2.8Å; H8-R12 WeakPolarHBondContact O-CB 3.35Å; H8-R12 PolarHBondContact O-N 2.9Å; H8-R12 VanDerWaalsContact O-N 3.12Å
9	G	75.9	Confident	74.2	Confident	33 Å²	33	127.5 Å²	127.5	34%	0.34	67%	0.674	S	S	.	*	H	α-helix	trans	-65.8	-44.2	176	0	0	0	0	0	111.4	F5 R12 T13	F5-G9 WeakPolarHBondContact O-CA 3.5Å; F5-G9 PolarHBondContact O-N 3.06Å; G9-R12 PolarHBondContact O-N 3.43Å; G9-R12 VanDerWaalsContact O-N 3.1Å; G9-R12 WeakPolarHBondContact O-CB 3.4Å; G9-T13 PolarHBondContact O-N 3.49Å; G9-T13 VanDerWaalsContact O-N 3.12Å; G9-T13 PolarHBondContact O-OG1 2.81Å
10	W	78.4	Confident	74.2	Confident	181 Å²	181	127.5 Å²	127.5	69%	0.686	67%	0.674	S	S	*	*	H	α-helix	trans	-63.6	-43.8	176.3	-171	-95.1	0	0	0	111.9	A6 R12 T13 S14	A6-W10 WeakPolarHBondContact O-CB 3.06Å; A6-W10 PolarHBondContact O-N 3.41Å; W10-R12 PolarHBondContact O-N 3.28Å; W10-T13 CarbonylContact O-C 3.57Å; W10-T13 PolarHBondContact O-N 3.35Å; W10-S14 WeakPolarHBondContact CZ2-OG 3.12Å; W10-S14 PolarHBondContact O-N 3.47Å
11	W	77.7	Confident	74.2	Confident	224 Å²	224	127.5 Å²	127.5	85%	0.848	67%	0.674	S	S	*	*	H	α-helix	trans	-62.8	-22.3	174.6	-165.2	-89.3	0	0	0	113.6	L7	L7-W11 WeakPolarHBondContact O-CB 3.4Å; L7-W11 PolarHBondContact O-N 2.93Å
12	R	74.9	Confident	74.8	Confident	219 Å²	219	123.5 Å²	123.5	83%	0.826	66%	0.658	S	S	*	*	H	α-helix	trans	-85	-16.4	173.2	-104	-80.9	-176.3	-141.7	-0.2	113.4	H8 G9 W10	H8-R12 WeakPolarHBondContact O-CB 3.35Å; H8-R12 PolarHBondContact O-N 2.9Å; H8-R12 VanDerWaalsContact O-N 3.12Å; G9-R12 PolarHBondContact O-N 3.43Å; G9-R12 VanDerWaalsContact O-N 3.1Å; G9-R12 WeakPolarHBondContact O-CB 3.4Å; W10-R12 PolarHBondContact O-N 3.28Å
13	T	72.4	Confident	75	Confident	117 Å²	117	127 Å²	127	72%	0.718	66%	0.657	S	S	*	*	H	α-helix	trans	-127.5	-0.2	-168.2	-19.6	0	0	0	0	115.1	G9 W10	G9-T13 PolarHBondContact O-N 3.49Å; G9-T13 VanDerWaalsContact O-N 3.12Å; G9-T13 PolarHBondContact O-OG1 2.81Å; W10-T13 CarbonylContact O-C 3.57Å; W10-T13 PolarHBondContact O-N 3.35Å
14	S	56.7	Low	75.3	Confident	127 Å²	127	131.5 Å²	131.5	89%	0.888	66%	0.658	S	S	*	*			trans	-101.6	0	153.4	-81	0	0	0	0	109.3	W10	W10-S14 WeakPolarHBondContact CZ2-OG 3.12Å; W10-S14 PolarHBondContact O-N 3.47Å

Retrieved 14 of 14 residues in 10.7 ms (Link to these results)

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