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Apelin receptor early endogenous ligand

Peptide hormone that functions as endogenous ligand for the G protein-coupled apelin receptor (APLNR/APJ), that plays a role in the regulation of normal cardiovascular function and fluid homeostasis1,2,3. Functions as a balanced agonist activating both G(i) protein pathway and beta-arrestin pathway of APLNR4. Downstream G proteins activation, apelin can inhibit cAMP production and activate key intracellular effectors such as ERKs5. On the other hand, APLNR activation induces beta-arrestin recruitment to the membrane leading to desensitization and internalization of the receptor6. Required for mesendodermal differentiation, blood vessels formation and heart morphogenesis during early development and for adult cardiovascular homeostasis7,8. Acts as a motogen by promoting mesendodermal cell migration during gastrulation by binding and activating APLNR. Acts as an early embryonic regulator of cellular movement with a role in migration and development of cardiac progenitor cells. May act as a chemoattractant for the activation of angioblast migration toward the embryonic midline, i.e. the position of the future vessel formation, during vasculogenesis. Positively regulates sinus venosus (SV)-derived endothelial cells migration into the developing heart to promote coronary blood vessel sprouting. Plays a role in placental vascular development; promotes placental trophoblast invasion and spiral artery remodeling in the uterus. Involved in the regulation of maternal cardiovascular homeostasis to prevent gestational hypertension and for potent cardioprotective functions during heart failure. Mediates myocardial contractility in an ERK1/2-dependent manner (By similarity).

AlphaFold DB , UniProt , Accession P0DMC3, Species HUMAN (Homo sapiens, Human), Gene APELA, Length 54 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M62Low87.9Confident197 Ų197132.7 Ų132.797%0.9761%0.614SS**  0-40.50-62.2-50.2-16100114.8
2R80.5Confident88.4Confident192 Ų192129.1 Ų129.173%0.72560%0.601SS**Hα-helixtrans-71.4-34.9-179.5-54.5-146.4105.4156.99.2114.4Q4 Q5 F6R2-Q4 VanDerWaalsContact C-N 3.25Å; R2-Q4 PolarHBondContact O-N 3.03Å; R2-Q5 WeakPolarHBondContact O-CB 3.43Å; R2-Q5 PolarHBondContact O-N 3.27Å; R2-F6 HydrophobicContact CB-CE2 4.39Å; R2-F6 VanDerWaalsContact O-CD2 3.26Å; R2-F6 WeakPolarHBondContact O-CD2 3.42Å; R2-F6 PolarHBondContact O-N 2.85Å
3F85.5Confident88.9Confident149 Ų149128.8 Ų128.865%0.65460%0.597SS**Hα-helixtrans-57.9-38179.9-170.2-108.8000112.9Q5 F6 L7F3-Q5 VanDerWaalsContact C-N 3.29Å; F3-Q5 PolarHBondContact O-N 3.27Å; F3-F6 PolarHBondContact O-N 3.36Å; F3-L7 HydrophobicContact CD1-CD1 3.81Å; F3-L7 HydrophobicContact CD1-CG 4.08Å; F3-L7 HydrophobicContact CE1-CD1 3.55Å; F3-L7 HydrophobicContact CE1-CD2 4.06Å; F3-L7 HydrophobicContact CE1-CG 3.82Å; F3-L7 HydrophobicContact CZ-CD1 4.39Å; F3-L7 HydrophobicContact CZ-CD2 4.07Å; F3-L7 HydrophobicContact CZ-CG 4.23Å; F3-L7 WeakPolarHBondContact O-CG 3.46Å; F3-L7 PolarHBondContact O-N 3.24Å
4Q88.4Confident89.2Confident136 Ų136123.3 Ų123.364%0.63657%0.573SS**Hα-helixtrans-63.1-34.7176.9-171.5175.6-14.500112.5R2 L7 F8R2-Q4 VanDerWaalsContact C-N 3.25Å; R2-Q4 PolarHBondContact O-N 3.03Å; Q4-L7 PolarHBondContact O-N 3.48Å; Q4-F8 WeakPolarHBondContact O-CB 3.5Å; Q4-F8 PolarHBondContact O-N 2.96Å
5Q88.9Confident89.3Confident122 Ų122122.1 Ų122.157%0.5757%0.57SS**Hα-helixtrans-67.3-41.2175.5-63.1176.7-38.900111.2R2 F3 F8 A9R2-Q5 WeakPolarHBondContact O-CB 3.43Å; R2-Q5 PolarHBondContact O-N 3.27Å; F3-Q5 VanDerWaalsContact C-N 3.29Å; F3-Q5 PolarHBondContact O-N 3.27Å; Q5-F8 PolarHBondContact O-N 3.24Å; Q5-A9 WeakPolarHBondContact O-CB 3.38Å; Q5-A9 PolarHBondContact O-N 2.93Å
6F91.7Very high89.3Confident146 Ų146118.1 Ų118.164%0.6456%0.559SS**Hα-helixtrans-63.4-44.6175.2-72.3-70.4000112R2 F3 F8 A9 F10R2-F6 HydrophobicContact CB-CE2 4.39Å; R2-F6 VanDerWaalsContact O-CD2 3.26Å; R2-F6 WeakPolarHBondContact O-CD2 3.42Å; R2-F6 PolarHBondContact O-N 2.85Å; F3-F6 PolarHBondContact O-N 3.36Å; F6-F8 VanDerWaalsContact C-N 3.34Å; F6-F8 PolarHBondContact O-N 3.49Å; F6-A9 PolarHBondContact O-N 2.97Å; F6-F10 WeakPolarHBondContact O-CB 3.26Å; F6-F10 PolarHBondContact O-N 3.47Å
7L93.2Very high89.3Confident73 Ų73115.8 Ų115.838%0.38255%0.551SS.*Hα-helixtrans-59.5-46.6175-70.2-179.3000111F3 Q4 A9 F10 F11F3-L7 HydrophobicContact CD1-CD1 3.81Å; F3-L7 HydrophobicContact CD1-CG 4.08Å; F3-L7 HydrophobicContact CE1-CD1 3.55Å; F3-L7 HydrophobicContact CE1-CD2 4.06Å; F3-L7 HydrophobicContact CE1-CG 3.82Å; F3-L7 HydrophobicContact CZ-CD1 4.39Å; F3-L7 HydrophobicContact CZ-CD2 4.07Å; F3-L7 HydrophobicContact CZ-CG 4.23Å; F3-L7 WeakPolarHBondContact O-CG 3.46Å; F3-L7 PolarHBondContact O-N 3.24Å; Q4-L7 PolarHBondContact O-N 3.48Å; L7-A9 PolarHBondContact O-N 3.47Å; L7-F10 WeakPolarHBondContact O-CB 3.11Å; L7-F10 PolarHBondContact O-N 3.35Å; L7-F11 WeakPolarHBondContact O-CD2 3.4Å; L7-F11 PolarHBondContact O-N 2.96Å
8F93.6Very high89.2Confident141 Ų141114.9 Ų114.962%0.61855%0.549SS*.Hα-helixtrans-62-45.9179.6-166.7-97.2000112Q4 Q5 F6 F10 F11 I12Q4-F8 WeakPolarHBondContact O-CB 3.5Å; Q4-F8 PolarHBondContact O-N 2.96Å; Q5-F8 PolarHBondContact O-N 3.24Å; F6-F8 VanDerWaalsContact C-N 3.34Å; F6-F8 PolarHBondContact O-N 3.49Å; F8-F10 VanDerWaalsContact C-N 3.32Å; F8-F10 PolarHBondContact O-N 3.41Å; F8-F11 PolarHBondContact O-N 3.42Å; F8-I12 HydrophobicContact CD1-CG1 4.04Å; F8-I12 HydrophobicContact CE1-CD1 4.08Å; F8-I12 HydrophobicContact CE1-CG1 3.78Å; F8-I12 HydrophobicContact CZ-CD1 4.12Å; F8-I12 HydrophobicContact CZ-CG1 4.26Å; F8-I12 WeakPolarHBondContact O-CG1 3.33Å; F8-I12 PolarHBondContact O-N 2.9Å
9A93.9Very high89Confident59 Ų59114.6 Ų114.649%0.48855%0.551SS.*Hα-helixtrans-60.1-42.1175.300000112Q5 F6 L7 I12 F13Q5-A9 WeakPolarHBondContact O-CB 3.38Å; Q5-A9 PolarHBondContact O-N 2.93Å; F6-A9 PolarHBondContact O-N 2.97Å; L7-A9 PolarHBondContact O-N 3.47Å; A9-I12 PolarHBondContact O-N 2.98Å; A9-F13 WeakPolarHBondContact O-CB 3.33Å; A9-F13 PolarHBondContact O-N 3.19Å
10F94.7Very high88.6Confident121 Ų121113.3 Ų113.353%0.53155%0.546SS..Hα-helixtrans-61.6-46175-179.5-98.7000111.7F6 L7 F8 I12 F13 I14F6-F10 WeakPolarHBondContact O-CB 3.26Å; F6-F10 PolarHBondContact O-N 3.47Å; L7-F10 WeakPolarHBondContact O-CB 3.11Å; L7-F10 PolarHBondContact O-N 3.35Å; F8-F10 VanDerWaalsContact C-N 3.32Å; F8-F10 PolarHBondContact O-N 3.41Å; F10-I12 PolarHBondContact O-N 3.4Å; F10-F13 WeakPolarHBondContact O-CB 3.29Å; F10-F13 PolarHBondContact O-N 3Å; F10-I14 HydrophobicContact CD1-CG1 4.15Å; F10-I14 HydrophobicContact CD2-CG1 4.45Å; F10-I14 HydrophobicContact CE1-CD1 4.38Å; F10-I14 HydrophobicContact CE1-CG1 3.76Å; F10-I14 HydrophobicContact CE2-CD1 4.12Å; F10-I14 HydrophobicContact CE2-CG1 4.09Å; F10-I14 HydrophobicContact CG-CG1 4.48Å; F10-I14 HydrophobicContact CZ-CD1 3.86Å; F10-I14 HydrophobicContact CZ-CG1 3.73Å; F10-I14 VanDerWaalsContact O-CG1 3.31Å; F10-I14 WeakPolarHBondContact O-CG1 3.48Å; F10-I14 PolarHBondContact O-N 2.93Å
11F94.5Very high88.1Confident124 Ų124111.4 Ų111.454%0.54454%0.544SS..Hα-helixtrans-59.6-46.6176.3-85.4-69000112.1L7 F8 F13 I14 M15L7-F11 WeakPolarHBondContact O-CD2 3.4Å; L7-F11 PolarHBondContact O-N 2.96Å; F8-F11 PolarHBondContact O-N 3.42Å; F11-F13 VanDerWaalsContact C-N 3.31Å; F11-F13 PolarHBondContact O-N 3.31Å; F11-I14 PolarHBondContact O-N 3.39Å; F11-M15 WeakPolarHBondContact O-CB 3.25Å; F11-M15 VanDerWaalsContact O-CG 3.29Å; F11-M15 WeakPolarHBondContact O-CG 3.5Å; F11-M15 PolarHBondContact O-N 2.99Å
12I94.3Very high88.6Confident89 Ų89103.8 Ų103.846%0.45652%0.516SS..Hα-helixtrans-61.1-40.9177.4-65.3-65.2000111.3F8 A9 F10 M15 S16F8-I12 HydrophobicContact CD1-CG1 4.04Å; F8-I12 HydrophobicContact CE1-CD1 4.08Å; F8-I12 HydrophobicContact CE1-CG1 3.78Å; F8-I12 HydrophobicContact CZ-CD1 4.12Å; F8-I12 HydrophobicContact CZ-CG1 4.26Å; F8-I12 WeakPolarHBondContact O-CG1 3.33Å; F8-I12 PolarHBondContact O-N 2.9Å; A9-I12 PolarHBondContact O-N 2.98Å; F10-I12 PolarHBondContact O-N 3.4Å; I12-M15 PolarHBondContact O-N 2.79Å; I12-S16 WeakPolarHBondContact O-CB 3.43Å; I12-S16 PolarHBondContact O-N 3.49Å; I12-S16 PolarHBondContact O-OG 2.95Å
13F94.8Very high87.9Confident125 Ų12599.2 Ų99.255%0.54850%0.503SS..Hα-helixtrans-63-48.1177.4-178.1-104.3000112A9 F10 F11 M15 S16 L17A9-F13 WeakPolarHBondContact O-CB 3.33Å; A9-F13 PolarHBondContact O-N 3.19Å; F10-F13 WeakPolarHBondContact O-CB 3.29Å; F10-F13 PolarHBondContact O-N 3Å; F11-F13 VanDerWaalsContact C-N 3.31Å; F11-F13 PolarHBondContact O-N 3.31Å; F13-M15 PolarHBondContact O-N 3.39Å; F13-S16 WeakPolarHBondContact O-CB 3.49Å; F13-S16 PolarHBondContact O-N 3.48Å; F13-L17 HydrophobicContact CD1-CD1 3.82Å; F13-L17 HydrophobicContact CE1-CD1 3.33Å; F13-L17 HydrophobicContact CE1-CG 4.2Å; F13-L17 HydrophobicContact CZ-CD1 3.73Å; F13-L17 HydrophobicContact CZ-CG 4.26Å; F13-L17 WeakPolarHBondContact O-CG 3.41Å; F13-L17 PolarHBondContact O-N 3.41Å
14I92.8Very high86.8Confident52 Ų52100.6 Ų100.627%0.26750%0.504SS..Hα-helixtrans-62.8-43.8177.9-64.4-66.3000110.9F10 F11 S16 L17 L18F10-I14 HydrophobicContact CD1-CG1 4.15Å; F10-I14 HydrophobicContact CD2-CG1 4.45Å; F10-I14 HydrophobicContact CE1-CD1 4.38Å; F10-I14 HydrophobicContact CE1-CG1 3.76Å; F10-I14 HydrophobicContact CE2-CD1 4.12Å; F10-I14 HydrophobicContact CE2-CG1 4.09Å; F10-I14 HydrophobicContact CG-CG1 4.48Å; F10-I14 HydrophobicContact CZ-CD1 3.86Å; F10-I14 HydrophobicContact CZ-CG1 3.73Å; F10-I14 VanDerWaalsContact O-CG1 3.31Å; F10-I14 WeakPolarHBondContact O-CG1 3.48Å; F10-I14 PolarHBondContact O-N 2.93Å; F11-I14 PolarHBondContact O-N 3.39Å; I14-S16 VanDerWaalsContact C-N 3.31Å; I14-S16 PolarHBondContact O-N 2.92Å; I14-L17 PolarHBondContact O-N 3.25Å; I14-L18 HydrophobicContact CG2-CD1 3.72Å; I14-L18 WeakPolarHBondContact O-CD1 3.27Å; I14-L18 PolarHBondContact O-N 3.24Å
15M90.8Very high85.4Confident105 Ų10597.5 Ų97.552%0.51750%0.496SS..Hα-helixtrans-61-40.1176.7-70.8-55.8105.500112.2F11 I12 F13 L18 L19F11-M15 WeakPolarHBondContact O-CB 3.25Å; F11-M15 VanDerWaalsContact O-CG 3.29Å; F11-M15 WeakPolarHBondContact O-CG 3.5Å; F11-M15 PolarHBondContact O-N 2.99Å; I12-M15 PolarHBondContact O-N 2.79Å; F13-M15 PolarHBondContact O-N 3.39Å; M15-L18 HydrophobicContact CE-CD2 4.42Å; M15-L18 PolarHBondContact O-N 3.26Å; M15-L19 WeakPolarHBondContact O-CB 3.3Å; M15-L19 PolarHBondContact O-N 2.98Å
16S90Very high84.1Confident58 Ų5895.8 Ų95.841%0.40649%0.493SS..Hα-helixtrans-64.2-43.2176.6-58.20000111.7I12 F13 I14 L19 I20I12-S16 WeakPolarHBondContact O-CB 3.43Å; I12-S16 PolarHBondContact O-N 3.49Å; I12-S16 PolarHBondContact O-OG 2.95Å; F13-S16 WeakPolarHBondContact O-CB 3.49Å; F13-S16 PolarHBondContact O-N 3.48Å; I14-S16 VanDerWaalsContact C-N 3.31Å; I14-S16 PolarHBondContact O-N 2.92Å; S16-L19 PolarHBondContact O-N 2.91Å; S16-I20 WeakPolarHBondContact O-CD1 3.31Å; S16-I20 VanDerWaalsContact O-CG1 3.25Å; S16-I20 WeakPolarHBondContact O-CG1 3.48Å; S16-I20 PolarHBondContact O-N 3.34Å
17L89.2Confident82.6Confident79 Ų7992.6 Ų92.641%0.41448%0.483SS..Hα-helixtrans-63-43.6175.3-74.3176.3000112.3F13 I14 L19 I20 S21F13-L17 HydrophobicContact CD1-CD1 3.82Å; F13-L17 HydrophobicContact CE1-CD1 3.33Å; F13-L17 HydrophobicContact CE1-CG 4.2Å; F13-L17 HydrophobicContact CZ-CD1 3.73Å; F13-L17 HydrophobicContact CZ-CG 4.26Å; F13-L17 WeakPolarHBondContact O-CG 3.41Å; F13-L17 PolarHBondContact O-N 3.41Å; I14-L17 PolarHBondContact O-N 3.25Å; L17-L19 VanDerWaalsContact C-N 3.31Å; L17-L19 PolarHBondContact O-N 3.43Å; L17-I20 PolarHBondContact O-N 2.88Å; L17-S21 WeakPolarHBondContact O-CB 3.49Å; L17-S21 PolarHBondContact O-N 3.33Å; L17-S21 PolarHBondContact O-OG 2.99Å
18L86.9Confident81.1Confident100 Ų10094 Ų9452%0.52449%0.49SS..Hα-helixtrans-62.1-39.4175.4-95.773.8000111.7I14 M15 S21 G22I14-L18 HydrophobicContact CG2-CD1 3.72Å; I14-L18 WeakPolarHBondContact O-CD1 3.27Å; I14-L18 PolarHBondContact O-N 3.24Å; M15-L18 HydrophobicContact CE-CD2 4.42Å; M15-L18 PolarHBondContact O-N 3.26Å; L18-S21 WeakPolarHBondContact CA-OG 3.22Å; L18-S21 PolarHBondContact O-N 3.47Å; L18-S21 PolarHBondContact O-OG 2.83Å; L18-S21 VanDerWaalsContact O-OG 3.05Å; L18-G22 PolarHBondContact O-N 3.05Å
19L84.8Confident79.6Confident110 Ų11091.3 Ų91.358%0.57649%0.485SS*.Hα-helixtrans-67.1-40.5178.1-165.771.5000111.4M15 S16 L17 Q23M15-L19 WeakPolarHBondContact O-CB 3.3Å; M15-L19 PolarHBondContact O-N 2.98Å; S16-L19 PolarHBondContact O-N 2.91Å; L17-L19 VanDerWaalsContact C-N 3.31Å; L17-L19 PolarHBondContact O-N 3.43Å; L19-Q23 VanDerWaalsContact O-CB 3.3Å; L19-Q23 WeakPolarHBondContact O-CB 3.39Å; L19-Q23 VanDerWaalsContact O-CG 3.27Å; L19-Q23 WeakPolarHBondContact O-CG 3.05Å; L19-Q23 PolarHBondContact O-N 3.2Å
20I81.6Confident78.1Confident88 Ų8894.6 Ų94.645%0.45149%0.492SS..Hα-helixtrans-66.7-42.9175.9-65.8162.9000110.7S16 L17 R24S16-I20 WeakPolarHBondContact O-CD1 3.31Å; S16-I20 VanDerWaalsContact O-CG1 3.25Å; S16-I20 WeakPolarHBondContact O-CG1 3.48Å; S16-I20 PolarHBondContact O-N 3.34Å; L17-I20 PolarHBondContact O-N 2.88Å; I20-R24 WeakPolarHBondContact O-CG 3.42Å; I20-R24 PolarHBondContact O-N 2.88Å
21S78.1Confident76.6Confident74 Ų7497.8 Ų97.852%0.51750%0.501SS..Hα-helixtrans-72-32.9-179.369.90000112.5L17 L18 P25L17-S21 WeakPolarHBondContact O-CB 3.49Å; L17-S21 PolarHBondContact O-N 3.33Å; L17-S21 PolarHBondContact O-OG 2.99Å; L18-S21 WeakPolarHBondContact CA-OG 3.22Å; L18-S21 PolarHBondContact O-N 3.47Å; L18-S21 PolarHBondContact O-OG 2.83Å; L18-S21 VanDerWaalsContact O-OG 3.05Å; S21-P25 WeakPolarHBondContact O-CD 3.26Å
22G72.6Confident75.1Confident36 Ų36101.2 Ų101.237%0.37151%0.51SS..Hα-helixtrans-76.6-34.2175.600000113.8L18 P25 V26L18-G22 PolarHBondContact O-N 3.05Å; G22-P25 VanDerWaalsContact O-CD 3.3Å; G22-P25 WeakPolarHBondContact O-CD 3.42Å; G22-P25 WeakPolarHBondContact O-CG 3.42Å; G22-V26 WeakPolarHBondContact O-CG2 3.25Å
23Q66.5Low73.7Confident97 Ų97104.2 Ų104.245%0.45352%0.52SS..Hα-helixtrans-73.6-31.6176.9-77.2-169.681.300113.4L19 V26 N27L19-Q23 VanDerWaalsContact O-CB 3.3Å; L19-Q23 WeakPolarHBondContact O-CB 3.39Å; L19-Q23 VanDerWaalsContact O-CG 3.27Å; L19-Q23 WeakPolarHBondContact O-CG 3.05Å; L19-Q23 PolarHBondContact O-N 3.2Å; Q23-V26 PolarHBondContact O-N 3.47Å; Q23-N27 VanDerWaalsContact O-CB 3.26Å; Q23-N27 WeakPolarHBondContact O-CB 3.38Å; Q23-N27 PolarHBondContact O-N 3.26Å; Q23-N27 PolarHBondContact O-ND2 2.83Å
24R61.8Low72.2Confident178 Ų178103.3 Ų103.367%0.67252%0.52SS*.Hα-helixtrans-59.3-48179.1-80.5-179.9-179.1-162.41.8114.4I20 L28I20-R24 WeakPolarHBondContact O-CG 3.42Å; I20-R24 PolarHBondContact O-N 2.88Å; R24-L28 WeakPolarHBondContact O-CB 3.38Å; R24-L28 WeakPolarHBondContact O-CD1 3.41Å; R24-L28 VanDerWaalsContact O-CG 3.31Å; R24-L28 WeakPolarHBondContact O-CG 3.43Å; R24-L28 PolarHBondContact O-N 3.31Å
25P59.6Low70.7Confident71 Ų71110.8 Ų110.846%0.46155%0.545SS..Hα-helixtrans-71.4-36.4178.326.2-33000112.2S21 G22 T29S21-P25 WeakPolarHBondContact O-CD 3.26Å; G22-P25 VanDerWaalsContact O-CD 3.3Å; G22-P25 WeakPolarHBondContact O-CD 3.42Å; G22-P25 WeakPolarHBondContact O-CG 3.42Å; P25-T29 WeakPolarHBondContact O-CB 3.3Å; P25-T29 WeakPolarHBondContact O-CG2 2.83Å; P25-T29 PolarHBondContact O-N 3.23Å; P25-T29 PolarHBondContact O-OG1 3.41Å
26V59.9Low69.3Low85 Ų85114.1 Ų114.152%0.51556%0.557SS.*Hα-helixtrans-68.6-45.7179.5179.40000110.7G22 Q23 L28 T29 M30G22-V26 WeakPolarHBondContact O-CG2 3.25Å; Q23-V26 PolarHBondContact O-N 3.47Å; V26-L28 PolarHBondContact O-N 2.68Å; V26-T29 PolarHBondContact O-OG1 3.02Å; V26-M30 WeakPolarHBondContact O-CB 3.24Å; V26-M30 PolarHBondContact O-N 2.87Å
27N61.1Low68Low80 Ų80119 Ų11943%0.42857%0.572SS.*Hα-helixtrans-69.4-31.1179.9-73.8-31.4000113.1Q23 R31Q23-N27 VanDerWaalsContact O-CB 3.26Å; Q23-N27 WeakPolarHBondContact O-CB 3.38Å; Q23-N27 PolarHBondContact O-N 3.26Å; Q23-N27 PolarHBondContact O-ND2 2.83Å; N27-R31 WeakPolarHBondContact O-CA 3.08Å; N27-R31 WeakPolarHBondContact O-CB 3.48Å; N27-R31 VanDerWaalsContact O-CG 3.24Å; N27-R31 WeakPolarHBondContact O-CG 3.47Å; N27-R31 PolarHBondContact O-N 2.83Å
28L62.6Low66.7Low103 Ų103121 Ų12154%0.53958%0.584SS.*Hα-helixtrans-76.3-42.9176.6-73.6170.6000112.5R24 V26 R32R24-L28 WeakPolarHBondContact O-CB 3.38Å; R24-L28 WeakPolarHBondContact O-CD1 3.41Å; R24-L28 VanDerWaalsContact O-CG 3.31Å; R24-L28 WeakPolarHBondContact O-CG 3.43Å; R24-L28 PolarHBondContact O-N 3.31Å; V26-L28 PolarHBondContact O-N 2.68Å; L28-R32 WeakPolarHBondContact O-CB 3.31Å; L28-R32 VanDerWaalsContact O-CG 3.3Å; L28-R32 WeakPolarHBondContact O-CG 3.43Å; L28-R32 PolarHBondContact O-N 3.33Å
29T61.4Low65.4Low84 Ų84118 Ų11852%0.51557%0.571SS.*Hα-helixtrans-69.4-39.4176.250.90000111.5P25 V26 R32 K33P25-T29 WeakPolarHBondContact O-CB 3.3Å; P25-T29 WeakPolarHBondContact O-CG2 2.83Å; P25-T29 PolarHBondContact O-N 3.23Å; P25-T29 PolarHBondContact O-OG1 3.41Å; V26-T29 PolarHBondContact O-OG1 3.02Å; T29-R32 PolarHBondContact O-N 3.25Å; T29-K33 PolarHBondContact O-N 3.41Å
30M62.4Low64.3Low128 Ų128119.6 Ų119.663%0.63158%0.579SS**Hα-helixtrans-70.8-38174.5-151.8-172.4-162.900111.5V26 R32 K33 L34V26-M30 WeakPolarHBondContact O-CB 3.24Å; V26-M30 PolarHBondContact O-N 2.87Å; M30-R32 PolarHBondContact O-N 3.46Å; M30-K33 PolarHBondContact O-N 2.77Å; M30-L34 VanDerWaalsContact O-CB 3.25Å; M30-L34 WeakPolarHBondContact O-CB 3.44Å; M30-L34 PolarHBondContact O-N 3.48Å
31R62.9Low63.2Low188 Ų188124.5 Ų124.571%0.70960%0.6SS**Hα-helixtrans-61-42169.4-89.8-170.8-175.6-134.13.1112N27 L34 R35N27-R31 WeakPolarHBondContact O-CA 3.08Å; N27-R31 WeakPolarHBondContact O-CB 3.48Å; N27-R31 VanDerWaalsContact O-CG 3.24Å; N27-R31 WeakPolarHBondContact O-CG 3.47Å; N27-R31 PolarHBondContact O-N 2.83Å; R31-L34 PolarHBondContact O-N 3.22Å; R31-R35 WeakPolarHBondContact O-CB 3.3Å; R31-R35 PolarHBondContact O-N 2.9Å
32R63.2Low62.2Low195 Ų195132.3 Ų132.374%0.73662%0.618SS**Hα-helixtrans-64.1-42.8176.6-76.9179.8-172.4176.72.9111.3L28 T29 M30 K36L28-R32 WeakPolarHBondContact O-CB 3.31Å; L28-R32 VanDerWaalsContact O-CG 3.3Å; L28-R32 WeakPolarHBondContact O-CG 3.43Å; L28-R32 PolarHBondContact O-N 3.33Å; T29-R32 PolarHBondContact O-N 3.25Å; M30-R32 PolarHBondContact O-N 3.46Å; R32-K36 PolarHBondContact O-N 2.97Å; R32-K36 VanDerWaalsContact O-N 3.1Å
33K64.4Low61.6Low152 Ų152141.8 Ų141.866%0.66164%0.643SS**Hα-helixtrans-64.9-44.6174.1-86.2-175.4173.4-178.20112.3T29 M30 R35 K36 H37T29-K33 PolarHBondContact O-N 3.41Å; M30-K33 PolarHBondContact O-N 2.77Å; K33-R35 PolarHBondContact O-N 3.08Å; K33-K36 WeakPolarHBondContact O-CB 3.42Å; K33-K36 PolarHBondContact O-N 3.16Å; K33-K36 VanDerWaalsContact O-N 3.16Å; K33-H37 PolarHBondContact O-CD2 3.49Å; K33-H37 PolarHBondContact O-N 3.1Å
34L63.7Low61.4Low106 Ų106141.3 Ų141.356%0.55565%0.649SS**Hα-helixtrans-64.9-40.3178.9-166.575.8000111.5M30 R31 K36 H37 N38M30-L34 VanDerWaalsContact O-CB 3.25Å; M30-L34 WeakPolarHBondContact O-CB 3.44Å; M30-L34 PolarHBondContact O-N 3.48Å; R31-L34 PolarHBondContact O-N 3.22Å; L34-K36 VanDerWaalsContact C-N 3.28Å; L34-K36 PolarHBondContact O-N 3.41Å; L34-H37 PolarHBondContact O-N 2.92Å; L34-N38 WeakPolarHBondContact O-CB 3.22Å; L34-N38 PolarHBondContact O-N 3.37Å
35R61.7Low61.5Low210 Ų210137.6 Ų137.679%0.79264%0.64SS**Hα-helixtrans-65.2-32174.9-159.6178.7173.6-157.7-3.4111.9R31 K33 C39R31-R35 WeakPolarHBondContact O-CB 3.3Å; R31-R35 PolarHBondContact O-N 2.9Å; K33-R35 PolarHBondContact O-N 3.08Å; R35-C39 PolarHBondContact O-N 2.87Å; R35-C39 VanDerWaalsContact O-N 3.08Å
36K61.5Low61.8Low175 Ų175138 Ų13876%0.76164%0.643SS**Hα-helixtrans-71.8-37.1173.7-166.7177.6-179.4-178.50112.4R32 K33 L34R32-K36 PolarHBondContact O-N 2.97Å; R32-K36 VanDerWaalsContact O-N 3.1Å; K33-K36 WeakPolarHBondContact O-CB 3.42Å; K33-K36 PolarHBondContact O-N 3.16Å; K33-K36 VanDerWaalsContact O-N 3.16Å; L34-K36 VanDerWaalsContact C-N 3.28Å; L34-K36 PolarHBondContact O-N 3.41Å
37H62.7Low61.8Low160 Ų160141.4 Ų141.474%0.74166%0.658SS**Hα-helixtrans-74.1-34.4175.1-85.7-76000113.3K33 L34 C39K33-H37 PolarHBondContact O-CD2 3.49Å; K33-H37 PolarHBondContact O-N 3.1Å; L34-H37 PolarHBondContact O-N 2.92Å; H37-C39 VanDerWaalsContact C-N 3.35Å
38N61.2Low61.7Low121 Ų121146 Ų14665%0.64768%0.676SS**Hα-helixtrans-79.2-15.2175-78-14.9000113.5L34 L40L34-N38 WeakPolarHBondContact O-CB 3.22Å; L34-N38 PolarHBondContact O-N 3.37Å; N38-L40 PolarHBondContact O-N 2.9Å
39C60.1Low61.7Low38 Ų38144.3 Ų144.326%0.25767%0.673SS.*SBendtrans-72.890.7160.2-163.60000107.6R35 H37 Q41 C44R35-C39 PolarHBondContact O-N 2.87Å; R35-C39 VanDerWaalsContact O-N 3.08Å; H37-C39 VanDerWaalsContact C-N 3.35Å; C39-Q41 PolarHBondContact O-N 2.91Å; C39-C44 HydrophobicContact CB-CB 4.12Å; C39-C44 WeakPolarHBondContact CB-SG 3.08Å; C39-C44 WeakPolarHBondContact SG-CB 3.17Å; C39-C44 CovalentContact SG-SG 2.03Å; C39-C44 PolarHBondContact SG-SG 2.03Å
40L61.1Low61.7Low142 Ų142149.1 Ų149.174%0.74368%0.682SS**  trans-32.5109.6164.5-82.5152.3000108.6N38 R42 R43N38-L40 PolarHBondContact O-N 2.9Å; L40-R42 PolarHBondContact O-N 2.66Å; L40-R43 PolarHBondContact O-N 2.93Å
41Q58.9Low61.9Low191 Ų191147.3 Ų147.389%0.89368%0.678SS**THydrogen-bonded Turntrans-47.8-2.6-175-164.2173.41.200115C39C39-Q41 PolarHBondContact O-N 2.91Å
42R57Low62.4Low239 Ų239144 Ų14490%0.90268%0.681SS**THydrogen-bonded Turntrans-95.8-21.6173.4-72.2-166.4-179.7178.41.3116.3L40L40-R42 PolarHBondContact O-N 2.66Å
43R60.4Low62.5Low235 Ų235143.2 Ų143.289%0.88768%0.683SS**THydrogen-bonded Turntrans-104.6-18.4-176.7-90.6-175.6179.6167.50.5115.3L40 M45L40-R43 PolarHBondContact O-N 2.93Å; R43-M45 PolarHBondContact O-N 3.45Å
44C61.8Low62.9Low86 Ų86145.4 Ų145.458%0.58171%0.712SS**  trans-94.934.4178.2-76.70000113.5C39C39-C44 HydrophobicContact CB-CB 4.12Å; C39-C44 WeakPolarHBondContact CB-SG 3.08Å; C39-C44 WeakPolarHBondContact SG-CB 3.17Å; C39-C44 CovalentContact SG-SG 2.03Å; C39-C44 PolarHBondContact SG-SG 2.03Å
45M64Low62.9Low100 Ų100147.4 Ų147.449%0.49372%0.72SS.*  trans-68.4124.1166.2-95.7-92.8156.700108R43 L47R43-M45 PolarHBondContact O-N 3.45Å; M45-L47 PolarHBondContact O-N 3.09Å; M45-L47 VanDerWaalsContact O-N 3.09Å
46P66Low63Low80 Ų80144.1 Ų144.152%0.51972%0.716SS.*  trans-60.1119.6176.714.5-15.9000107.7H48 S49P46-H48 PolarHBondContact O-N 2.74Å; P46-S49 PolarHBondContact O-N 2.87Å; P46-S49 PolarHBondContact O-OG 2.97Å
47L60.2Low63Low157 Ų157142.3 Ų142.382%0.82271%0.714SS**G310 helixtrans-52.7-24.9177.5-91.393.6000111.9M45 S49M45-L47 PolarHBondContact O-N 3.09Å; M45-L47 VanDerWaalsContact O-N 3.09Å; L47-S49 VanDerWaalsContact C-N 3.34Å; L47-S49 PolarHBondContact O-N 3.45Å
48H59.1Low63.1Low175 Ų175141.3 Ų141.381%0.8171%0.712SS**G310 helixtrans-78.2-3.8176.8-75.3-87.8000115.9P46P46-H48 PolarHBondContact O-N 2.74Å
49S62.2Low63.2Low68 Ų68142.6 Ų142.648%0.47672%0.717SS.*G310 helixtrans-94.6-3.1179.362.30000114.7P46 L47P46-S49 PolarHBondContact O-N 2.87Å; P46-S49 PolarHBondContact O-OG 2.97Å; L47-S49 VanDerWaalsContact C-N 3.34Å; L47-S49 PolarHBondContact O-N 3.45Å
50R61.3Low63.4Low186 Ų186149.5 Ų149.570%0.70275%0.747SS**SBendtrans-108.39-176.4-70.5-171.8-178.3159.2-0.6114.6P52R50-P52 WeakPolarHBondContact O-CD 3.43Å
51V67.7Low63.5Low90 Ų90150.1 Ų150.155%0.54575%0.747SS.*  trans-102.5108.8176.2-175.70000108F53V51-F53 PolarHBondContact O-N 3.24Å
52P71.8Confident63.9Low119 Ų119146.9 Ų146.977%0.77374%0.736SS**  trans-67.1114.5159.215.6-4.7000106.3R50R50-P52 WeakPolarHBondContact O-CD 3.43Å
53F65.3Low64.5Low177 Ų177139.3 Ų139.378%0.77672%0.722SS**  trans-64.4139.7162.5-73.4-88.8000107.6V51V51-F53 PolarHBondContact O-N 3.24Å
54P74Confident64.8Low198 Ų198130.5 Ų130.5100%1.28671%0.708SS**  trans-60.30176.527.7-34.8000112.1

Retrieved 54 of 54 residues in 155.1 ms (Link to these results)