Q99N61_RAT Loading...

Neuroglobin-2

AlphaFold DB , UniProt , Accession Q99N61, Species RAT (Rattus norvegicus, Rat), Gene NGB-2, Length 38 aa.

						>Q99N61_RAT|Q99N61|NGB-2
MLAVTNVEDLSSLEGVPGHLGQEASGSGSEAQLLLDSR
					

Structure Viewer

Loading PAE data...

(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	38.3	Very low	54.1	Low	241 Å²	241	129 Å²	129	100%	1.187	73%	0.731	S	S	*	*				0	96.7	0	-172.9	162.2	160.1	0	0	106.6
2	L	44.2	Very low	54.5	Low	164 Å²	164	126.2 Å²	126.2	86%	0.859	73%	0.725	S	S	*	*			trans	-99.9	99.8	-178.4	-93.5	136.4	0	0	0	107.7	V4	L2-V4 HydrophobicContact CD2-CG2 4.34Å; L2-V4 HydrophobicContact CB-CG2 4.42Å; L2-V4 PolarHBondContact O-N 3.01Å
3	A	52.4	Low	55	Low	89 Å²	89	121.8 Å²	121.8	74%	0.736	70%	0.697	S	S	*	*			trans	-80.1	93.8	163	0	0	0	0	0	106.8	T5	A3-T5 PolarHBondContact O-N 2.73Å
4	V	48.8	Very low	55.2	Low	114 Å²	114	125.1 Å²	125.1	69%	0.691	70%	0.703	S	S	*	*			trans	-84.2	90.1	167.9	-177.2	0	0	0	0	106.3	L2 N6	L2-V4 HydrophobicContact CD2-CG2 4.34Å; L2-V4 HydrophobicContact CB-CG2 4.42Å; L2-V4 PolarHBondContact O-N 3.01Å; V4-N6 VanDerWaalsContact C-N 3.33Å; V4-N6 PolarHBondContact O-N 3.15Å
5	T	53.3	Low	55.6	Low	118 Å²	118	121.3 Å²	121.3	72%	0.724	70%	0.703	S	S	*	*			trans	-81.9	88.6	165.8	47.7	0	0	0	0	107.3	A3 V7	A3-T5 PolarHBondContact O-N 2.73Å; T5-V7 PolarHBondContact O-N 2.85Å
6	N	58.1	Low	56.2	Low	113 Å²	113	118.4 Å²	118.4	60%	0.604	69%	0.688	S	S	*	*			trans	-72.9	81	168.3	-154.9	25.2	0	0	0	107.4	V4 E8	V4-N6 VanDerWaalsContact C-N 3.33Å; V4-N6 PolarHBondContact O-N 3.15Å; N6-E8 PolarHBondContact ND2-OE2 3.06Å; N6-E8 PolarHBondContact O-N 2.77Å; N6-E8 VanDerWaalsContact O-N 3.16Å
7	V	60.4	Low	56	Low	126 Å²	126	119.2 Å²	119.2	76%	0.764	70%	0.698	S	S	*	*			trans	-84.9	79	167.8	-174.4	0	0	0	0	105.4	T5 D9	T5-V7 PolarHBondContact O-N 2.85Å; V7-D9 PolarHBondContact O-N 3.31Å
8	E	63.1	Low	56.4	Low	126 Å²	126	115.6 Å²	115.6	59%	0.589	69%	0.69	S	S	*	*			trans	-61.5	123.6	168.7	-70.2	170.9	120.2	0	0	106.7	N6 L10	N6-E8 PolarHBondContact ND2-OE2 3.06Å; N6-E8 PolarHBondContact O-N 2.77Å; N6-E8 VanDerWaalsContact O-N 3.16Å; E8-L10 VanDerWaalsContact C-N 3.27Å; E8-L10 WeakPolarHBondContact O-CG 3.3Å; E8-L10 PolarHBondContact O-N 3.06Å
9	D	61.2	Low	56.7	Low	111 Å²	111	112.8 Å²	112.8	59%	0.594	67%	0.669	S	S	*	*			trans	-63.6	87	-179.6	-177.7	30.5	0	0	0	109.7	V7 S11 S12	V7-D9 PolarHBondContact O-N 3.31Å; D9-S11 WeakPolarHBondContact OD1-CB 3.41Å; D9-S11 PolarHBondContact O-N 3.25Å; D9-S12 PolarHBondContact O-N 2.64Å
10	L	59	Low	56.9	Low	129 Å²	129	115.4 Å²	115.4	68%	0.675	68%	0.679	S	S	*	*	G	3₁₀ helix	trans	-62	-14.7	-178	-60.6	179.6	0	0	0	112.4	E8 S12 L13	E8-L10 VanDerWaalsContact C-N 3.27Å; E8-L10 WeakPolarHBondContact O-CG 3.3Å; E8-L10 PolarHBondContact O-N 3.06Å; L10-S12 VanDerWaalsContact C-N 3.27Å; L10-S12 PolarHBondContact O-N 3.05Å; L10-L13 HydrophobicContact CD2-CD1 3.88Å; L10-L13 PolarHBondContact O-N 3.45Å
11	S	56.2	Low	57	Low	88 Å²	88	112.8 Å²	112.8	62%	0.615	68%	0.677	S	S	*	*	G	3₁₀ helix	trans	-64.8	-28.8	173	-62.6	0	0	0	0	112.7	D9 L13	D9-S11 WeakPolarHBondContact OD1-CB 3.41Å; D9-S11 PolarHBondContact O-N 3.25Å; S11-L13 VanDerWaalsContact C-N 3.29Å; S11-L13 PolarHBondContact O-N 3.38Å
12	S	59.4	Low	57.9	Low	95 Å²	95	108.8 Å²	108.8	66%	0.664	66%	0.655	S	S	*	*	G	3₁₀ helix	trans	-78.7	-13.1	176.1	-175.2	0	0	0	0	113.6	D9 L10	D9-S12 PolarHBondContact O-N 2.64Å; L10-S12 VanDerWaalsContact C-N 3.27Å; L10-S12 PolarHBondContact O-N 3.05Å
13	L	60.5	Low	58.4	Low	69 Å²	69	109.4 Å²	109.4	36%	0.361	65%	0.653	S	S	.	*	T	Hydrogen-bonded Turn	trans	-88.9	-17.3	179	-78.2	149.5	0	0	0	111.7	L10 S11 G15 V16 H19	L10-L13 HydrophobicContact CD2-CD1 3.88Å; L10-L13 PolarHBondContact O-N 3.45Å; S11-L13 VanDerWaalsContact C-N 3.29Å; S11-L13 PolarHBondContact O-N 3.38Å; L13-G15 PolarHBondContact O-N 3.22Å; L13-V16 PolarHBondContact O-N 3.49Å; L13-H19 VanDerWaalsContact O-NE2 3.17Å; L13-H19 PolarHBondContact O-NE2 3.02Å; L13-H19 PolarHBondContact O-CD2 3.44Å; L13-H19 HydrophobicContact CB-CB 4.36Å; L13-H19 HydrophobicContact CD2-CB 3.99Å
14	E	57.7	Low	58.8	Low	168 Å²	168	110.3 Å²	110.3	79%	0.785	66%	0.661	S	S	*	*	T	Hydrogen-bonded Turn	trans	-57.5	106.9	-179	-161.2	-179	168	0	0	110.8
15	G	61.6	Low	59.1	Low	68 Å²	68	109.5 Å²	109.5	70%	0.701	66%	0.661	S	S	*	*	T	Hydrogen-bonded Turn	trans	105.8	2.7	179.9	0	0	0	0	0	116	L13 P17	L13-G15 PolarHBondContact O-N 3.22Å; G15-P17 VanDerWaalsContact O-CD 3.3Å; G15-P17 WeakPolarHBondContact O-CD 3.43Å
16	V	64.3	Low	59.3	Low	76 Å²	76	108 Å²	108	46%	0.461	67%	0.668	S	S	.	*			trans	-87.1	108	172.8	-177.4	0	0	0	0	110.6	L13 G18 H19	L13-V16 PolarHBondContact O-N 3.49Å; V16-G18 PolarHBondContact O-N 2.96Å; V16-H19 PolarHBondContact O-CD2 2.86Å; V16-H19 PolarHBondContact O-N 3.17Å
17	P	54	Low	59.7	Low	131 Å²	131	107.6 Å²	107.6	85%	0.851	67%	0.674	S	S	*	*	T	Hydrogen-bonded Turn	trans	-59.3	118.9	179.9	-19.4	32.6	0	0	0	110.3	G15	G15-P17 VanDerWaalsContact O-CD 3.3Å; G15-P17 WeakPolarHBondContact O-CD 3.43Å
18	G	62.4	Low	59.3	Low	55 Å²	55	104.2 Å²	104.2	57%	0.567	67%	0.665	S	S	*	*	T	Hydrogen-bonded Turn	trans	117.5	-13	-177.1	0	0	0	0	0	115.3	V16 Q22	V16-G18 PolarHBondContact O-N 2.96Å; G18-Q22 PolarHBondContact O-NE2 3.26Å
19	H	61.7	Low	59	Low	63 Å²	63	103.7 Å²	103.7	29%	0.292	68%	0.675	S	S	.	*	G	3₁₀ helix	trans	-75	-28.5	176.9	74.6	63.7	0	0	0	113.4	L13 V16 G21	L13-H19 VanDerWaalsContact O-NE2 3.17Å; L13-H19 PolarHBondContact O-NE2 3.02Å; L13-H19 PolarHBondContact O-CD2 3.44Å; L13-H19 HydrophobicContact CB-CB 4.36Å; L13-H19 HydrophobicContact CD2-CB 3.99Å; V16-H19 PolarHBondContact O-CD2 2.86Å; V16-H19 PolarHBondContact O-N 3.17Å; H19-G21 VanDerWaalsContact C-N 3.26Å; H19-G21 PolarHBondContact O-N 2.76Å
20	L	61.8	Low	58.8	Low	163 Å²	163	107.2 Å²	107.2	85%	0.853	69%	0.688	S	S	*	*	G	3₁₀ helix	trans	-81	-7.1	-172	-165.7	61.8	0	0	0	112.9
21	G	58	Low	58.4	Low	62 Å²	62	105.6 Å²	105.6	64%	0.639	69%	0.693	S	S	*	*	G	3₁₀ helix	trans	-115.7	3.1	-178.3	0	0	0	0	0	114.7	H19 E23	H19-G21 VanDerWaalsContact C-N 3.26Å; H19-G21 PolarHBondContact O-N 2.76Å; G21-E23 PolarHBondContact O-N 3.29Å
22	Q	58	Low	58.2	Low	156 Å²	156	108.9 Å²	108.9	73%	0.729	70%	0.699	S	S	*	*			trans	-78.8	67.8	169.2	-78.1	172.9	90.6	0	0	108.6	G18 A24	G18-Q22 PolarHBondContact O-NE2 3.26Å; Q22-A24 PolarHBondContact O-N 3.18Å
23	E	55.2	Low	58	Low	177 Å²	177	111.3 Å²	111.3	83%	0.827	70%	0.704	S	S	*	*			trans	-49.9	126.3	153.9	-66.6	-104.9	115	0	0	105.9	G21 S25	G21-E23 PolarHBondContact O-N 3.29Å; E23-S25 PolarHBondContact O-N 2.94Å
24	A	61	Low	57.6	Low	108 Å²	108	115.2 Å²	115.2	89%	0.893	72%	0.724	S	S	*	*			trans	-63.2	72	-175.4	0	0	0	0	0	111.4	Q22 G26	Q22-A24 PolarHBondContact O-N 3.18Å; A24-G26 VanDerWaalsContact C-N 3.34Å; A24-G26 PolarHBondContact O-N 3.2Å
25	S	54	Low	57.7	Low	98 Å²	98	113 Å²	113	69%	0.685	72%	0.717	S	S	*	*			trans	-86.1	89.3	163.2	-161.4	0	0	0	0	105.6	E23 S27	E23-S25 PolarHBondContact O-N 2.94Å; S25-S27 PolarHBondContact O-N 3.3Å
26	G	57.7	Low	57.1	Low	85 Å²	85	116.8 Å²	116.8	88%	0.876	72%	0.721	S	S	*	*			trans	-61.4	82	160.6	0	0	0	0	0	108.7	A24	A24-G26 VanDerWaalsContact C-N 3.34Å; A24-G26 PolarHBondContact O-N 3.2Å
27	S	65.8	Low	56.1	Low	106 Å²	106	119.3 Å²	119.3	74%	0.741	74%	0.742	S	S	*	*			trans	164.9	125.2	163.4	175.7	0	0	0	0	109.7	S25	S25-S27 PolarHBondContact O-N 3.3Å
28	G	52.5	Low	55.9	Low	55 Å²	55	127.7 Å²	127.7	57%	0.567	76%	0.757	S	S	*	*			trans	124.8	80.1	164.2	0	0	0	0	0	112.3
29	S	57.4	Low	55.6	Low	114 Å²	114	131.4 Å²	131.4	80%	0.797	77%	0.767	S	S	*	*				71.5	69	90.9	-60.3	0	0	0	0	112.6
30	E	56.7	Low	55.3	Low	185 Å²	185	134.9 Å²	134.9	86%	0.864	79%	0.792	S	S	*	*			trans	-165.7	-16	165.2	-110	145.7	-179.1	0	0	116.6	Q32	E30-Q32 PolarHBondContact O-N 3.16Å; E30-Q32 VanDerWaalsContact O-N 3.15Å
31	A	51.4	Low	54.9	Low	96 Å²	96	133.4 Å²	133.4	79%	0.793	79%	0.788	S	S	*	*			trans	-84.9	31.1	171.7	0	0	0	0	0	113.1	L33	A31-L33 PolarHBondContact O-N 3.25Å
32	Q	52	Low	54.8	Low	157 Å²	157	137.6 Å²	137.6	73%	0.734	80%	0.797	S	S	*	*			trans	-72.9	85.5	163.6	-82.3	-69	105.7	0	0	107.2	E30 L34	E30-Q32 PolarHBondContact O-N 3.16Å; E30-Q32 VanDerWaalsContact O-N 3.15Å; Q32-L34 HydrophobicContact CB-CD1 4.44Å; Q32-L34 HydrophobicContact CB-CG 4.49Å; Q32-L34 PolarHBondContact O-N 2.78Å
33	L	53.7	Low	54.6	Low	145 Å²	145	136.4 Å²	136.4	76%	0.759	80%	0.801	S	S	*	*			trans	-55.6	68.6	165.8	-153.9	115	0	0	0	109	A31 L35	A31-L33 PolarHBondContact O-N 3.25Å; L33-L35 HydrophobicContact CB-CD1 4.36Å; L33-L35 HydrophobicContact CD1-CD1 4.27Å; L33-L35 HydrophobicContact CD2-CD1 3.27Å; L33-L35 HydrophobicContact CG-CD1 3.31Å; L33-L35 PolarHBondContact O-N 2.9Å
34	L	52.8	Low	54.5	Low	151 Å²	151	133.7 Å²	133.7	79%	0.791	80%	0.799	S	S	*	*			trans	-81.7	64.6	169.8	-71.9	159.7	0	0	0	107.4	Q32	Q32-L34 HydrophobicContact CB-CD1 4.44Å; Q32-L34 HydrophobicContact CB-CG 4.49Å; Q32-L34 PolarHBondContact O-N 2.78Å
35	L	59.9	Low	54.1	Low	121 Å²	121	135.6 Å²	135.6	63%	0.634	79%	0.793	S	S	*	*			trans	-64.9	146.3	150.4	-76.1	90.4	0	0	0	107	L33	L33-L35 HydrophobicContact CB-CD1 4.36Å; L33-L35 HydrophobicContact CD1-CD1 4.27Å; L33-L35 HydrophobicContact CD2-CD1 3.27Å; L33-L35 HydrophobicContact CG-CD1 3.31Å; L33-L35 PolarHBondContact O-N 2.9Å
36	D	49.5	Very low	54.1	Low	148 Å²	148	138.5 Å²	138.5	79%	0.791	80%	0.801	S	S	*	*			trans	70.9	87.9	171.8	-67.4	-58.2	0	0	0	116.1
37	S	43.3	Very low	53.8	Low	129 Å²	129	142.9 Å²	142.9	90%	0.902	80%	0.795	S	S	*	*				-156.7	94	119	-76.4	0	0	0	0	109.5
38	R	50.1	Low	52.7	Low	308 Å²	308	146.3 Å²	146.3	100%	1.162	80%	0.8	S	S	*	*			trans	-56.5	0	155.8	163.2	-178.4	172.8	-101	-0.1	110.7

Retrieved 38 of 38 residues in 56 ms (Link to these results)

U.S. Privacy Notice - Disclaimer / Registrations / Copyright Statement - Linking Policy - Notice of Privacy Practices (HIPAA) - Notice of Non‑Discrimination
© Copyright 2026 St. Jude Children's Research Hospital, a not-for-profit, section 501(c)(3).