Q99P54_RAT Loading...

Phosphodiesterase 1C

AlphaFold DB , UniProt , Accession Q99P54, Species RAT (Rattus norvegicus, Rat), Gene Pde1c, Length 41 aa.

						>Q99P54_RAT|Q99P54|Pde1c
KGDKAGEKQQNGDLKDGKNKADKKDHSNTGNESKKADDPEE
					

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(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	K	44.7	Very low	62.8	Low	265 Å²	265	158.2 Å²	158.2	100%	1.152	85%	0.846	S	S	*	*				0	114.2	0	-80.1	178.4	179.5	176.3	105.8
2	G	52	Low	63.3	Low	74 Å²	74	149.1 Å²	149.1	76%	0.763	82%	0.817	S	S	*	*			trans	-59.9	149.2	-163.2	0	0	0	0	113.8
3	D	57.5	Low	64.1	Low	151 Å²	151	145.8 Å²	145.8	81%	0.807	80%	0.799	S	S	*	*	S	Bend	trans	-50.1	137.4	-177.4	-61.8	-90.6	0	0	114.2
4	K	63.5	Low	64.4	Low	196 Å²	196	145.6 Å²	145.6	85%	0.852	80%	0.795	S	S	*	*			trans	47.6	74.4	153.4	-65.3	174.7	-176.4	172.9	114.8	G6	K4-G6 VanDerWaalsContact O-N 3.15Å; K4-G6 PolarHBondContact O-N 2.78Å
5	A	60.4	Low	65	Low	109 Å²	109	146.7 Å²	146.7	90%	0.901	79%	0.789	S	S	*	*	S	Bend	trans	-55.2	114.9	156.9	0	0	0	0	110.2
6	G	62.4	Low	65.3	Low	68 Å²	68	146.3 Å²	146.3	70%	0.701	79%	0.786	S	S	*	*			trans	84.3	84.7	160	0	0	0	0	114.3	K4 K8	K4-G6 VanDerWaalsContact O-N 3.15Å; K4-G6 PolarHBondContact O-N 2.78Å; G6-K8 PolarHBondContact O-N 2.91Å
7	E	65	Low	65.5	Low	186 Å²	186	141.8 Å²	141.8	87%	0.869	78%	0.783	S	S	*	*			trans	-39.3	130.5	155.2	-81.4	165.2	85.9	0	110.8	Q9	E7-Q9 PolarHBondContact O-N 2.88Å
8	K	70.6	Confident	65.7	Low	198 Å²	198	143 Å²	143	86%	0.861	78%	0.779	S	S	*	*			trans	-53.6	127.9	174.7	-64.6	177.4	-179.2	-178	108.2	G6 Q10	G6-K8 PolarHBondContact O-N 2.91Å; K8-Q10 PolarHBondContact O-N 3.26Å
9	Q	71.2	Confident	65.9	Low	167 Å²	167	141.8 Å²	141.8	78%	0.78	77%	0.772	S	S	*	*			trans	-50.5	112	-176.8	-62.1	175	-75.8	0	110.6	E7 N11	E7-Q9 PolarHBondContact O-N 2.88Å; Q9-N11 PolarHBondContact O-N 2.81Å
10	Q	73.2	Confident	66	Low	187 Å²	187	144.6 Å²	144.6	87%	0.874	78%	0.776	S	S	*	*			trans	-77.4	82.3	160.2	-73.2	-170.7	-69.6	0	107.3	K8 G12	K8-Q10 PolarHBondContact O-N 3.26Å; Q10-G12 PolarHBondContact O-N 3.23Å
11	N	70.4	Confident	65.9	Low	139 Å²	139	140.6 Å²	140.6	74%	0.743	76%	0.763	S	S	*	*			trans	-71	69.5	155.4	-65.1	-37.4	0	0	106.8	Q9 D13	Q9-N11 PolarHBondContact O-N 2.81Å; N11-D13 PolarHBondContact O-N 3.06Å
12	G	68.6	Low	66.7	Low	49 Å²	49	134 Å²	134	51%	0.505	74%	0.74	S	S	.	*			trans	-67.8	118.1	167.3	0	0	0	0	106.3	Q10 L14	Q10-G12 PolarHBondContact O-N 3.23Å; G12-L14 PolarHBondContact O-N 3.17Å
13	D	73.8	Confident	67.4	Low	107 Å²	107	138.8 Å²	138.8	57%	0.572	74%	0.74	S	S	*	*			trans	-62.5	92.4	160.5	-174.5	0.4	0	0	106.5	N11 K15	N11-D13 PolarHBondContact O-N 3.06Å; D13-K15 WeakPolarHBondContact OD2-CE 3.18Å; D13-K15 PolarHBondContact OD2-NZ 3.34Å; D13-K15 IonicContact OD2-NZ 3.41Å; D13-K15 WeakPolarHBondContact OD2-CD 3.19Å; D13-K15 PolarHBondContact OD1-N 2.79Å; D13-K15 WeakPolarHBondContact OD1-CG 3.3Å; D13-K15 PolarHBondContact O-N 2.8Å; D13-K15 HydrophobicContact CB-CG 4.4Å
14	L	67.9	Low	68	Low	143 Å²	143	139.6 Å²	139.6	75%	0.749	74%	0.736	S	S	*	*			trans	-72.5	59.2	171.6	-66.9	175.9	0	0	108.4	G12 D16	G12-L14 PolarHBondContact O-N 3.17Å; L14-D16 PolarHBondContact O-N 2.95Å; L14-D16 VanDerWaalsContact O-N 3.08Å
15	K	73.2	Confident	68.2	Low	162 Å²	162	137.6 Å²	137.6	70%	0.704	74%	0.735	S	S	*	*			trans	-82.2	51.7	160.5	54	-175.5	170.3	-148.8	108.9	D13 G17	D13-K15 WeakPolarHBondContact OD2-CE 3.18Å; D13-K15 PolarHBondContact OD2-NZ 3.34Å; D13-K15 IonicContact OD2-NZ 3.41Å; D13-K15 WeakPolarHBondContact OD2-CD 3.19Å; D13-K15 PolarHBondContact OD1-N 2.79Å; D13-K15 WeakPolarHBondContact OD1-CG 3.3Å; D13-K15 PolarHBondContact O-N 2.8Å; D13-K15 HydrophobicContact CB-CG 4.4Å; K15-G17 VanDerWaalsContact C-N 3.33Å; K15-G17 PolarHBondContact O-N 2.99Å
16	D	69.6	Low	68.4	Low	140 Å²	140	139.8 Å²	139.8	75%	0.749	73%	0.726	S	S	*	*			trans	-70.5	97.8	166.9	-72.5	-31.3	0	0	107.4	L14	L14-D16 PolarHBondContact O-N 2.95Å; L14-D16 VanDerWaalsContact O-N 3.08Å
17	G	69.3	Low	68.6	Low	70 Å²	70	140.3 Å²	140.3	72%	0.722	72%	0.719	S	S	*	*			trans	71.9	65.8	136.9	0	0	0	0	116.3	K15	K15-G17 VanDerWaalsContact C-N 3.33Å; K15-G17 PolarHBondContact O-N 2.99Å
18	K	69.8	Low	68.6	Low	163 Å²	163	137.7 Å²	137.7	71%	0.709	71%	0.711	S	S	*	*			trans	-113.9	79	137.3	-144.5	177.1	-149.3	-57	109.4	K20 D22	K18-K20 PolarHBondContact O-N 3.37Å; K18-K20 VanDerWaalsContact O-N 3.17Å; K18-D22 IonicContact NZ-OD2 2.63Å; K18-D22 PolarHBondContact NZ-OD2 2.99Å
19	N	69.1	Low	68.2	Low	121 Å²	121	134.5 Å²	134.5	65%	0.647	71%	0.709	S	S	*	*			trans	-47.3	122.1	165.4	-175.5	-4.4	0	0	107.9	A21 D22	N19-A21 WeakPolarHBondContact ND2-CB 3.36Å; N19-A21 PolarHBondContact OD1-N 3.28Å; N19-A21 WeakPolarHBondContact OD1-CB 2.94Å; N19-A21 HydrophobicContact CB-CB 4.39Å; N19-A21 PolarHBondContact O-N 2.97Å; N19-D22 PolarHBondContact O-N 3.17Å
20	K	67.4	Low	67.9	Low	197 Å²	197	129.7 Å²	129.7	86%	0.857	70%	0.703	S	S	*	*	G	3₁₀ helix	trans	-63.7	-2.2	175.4	-71.3	-162.7	178.8	179.1	112.7	K18 D22 K23	K18-K20 PolarHBondContact O-N 3.37Å; K18-K20 VanDerWaalsContact O-N 3.17Å; K20-D22 PolarHBondContact O-N 3.41Å; K20-K23 PolarHBondContact O-N 3.07Å
21	A	64.5	Low	67.6	Low	61 Å²	61	127 Å²	127	50%	0.504	70%	0.695	S	S	.	*	G	3₁₀ helix	trans	-61.5	-19.9	172.4	0	0	0	0	114.2	N19 K23	N19-A21 WeakPolarHBondContact ND2-CB 3.36Å; N19-A21 PolarHBondContact OD1-N 3.28Å; N19-A21 WeakPolarHBondContact OD1-CB 2.94Å; N19-A21 HydrophobicContact CB-CB 4.39Å; N19-A21 PolarHBondContact O-N 2.97Å; A21-K23 PolarHBondContact O-N 3.33Å; A21-K23 VanDerWaalsContact O-N 3.07Å
22	D	61.9	Low	67.3	Low	127 Å²	127	128.8 Å²	128.8	68%	0.679	70%	0.699	S	S	*	*	G	3₁₀ helix	trans	-67.7	-3.3	175.4	-110.1	3.7	0	0	114.5	K18 N19 K20	K18-D22 IonicContact NZ-OD2 2.63Å; K18-D22 PolarHBondContact NZ-OD2 2.99Å; N19-D22 PolarHBondContact O-N 3.17Å; K20-D22 PolarHBondContact O-N 3.41Å
23	K	65.8	Low	67.2	Low	174 Å²	174	132.3 Å²	132.3	76%	0.757	72%	0.716	S	S	*	*	G	3₁₀ helix	trans	-136.7	41.7	-178.7	-75.1	-168.6	175.5	178.5	113.7	K20 A21	K20-K23 PolarHBondContact O-N 3.07Å; A21-K23 PolarHBondContact O-N 3.33Å; A21-K23 VanDerWaalsContact O-N 3.07Å
24	K	69.9	Low	67	Low	167 Å²	167	135.9 Å²	135.9	73%	0.726	73%	0.726	S	S	*	*			trans	-140.9	39.2	168.8	-113.2	-178.1	-152	-73.9	115.6	H26	K24-H26 PolarHBondContact O-N 2.63Å
25	D	67.5	Low	67	Low	155 Å²	155	137.9 Å²	137.9	83%	0.829	73%	0.729	S	S	*	*			trans	-87.2	68.9	138.3	-78.7	-27.4	0	0	107.9	S27	D25-S27 PolarHBondContact O-N 3.08Å
26	H	66.1	Low	66.6	Low	154 Å²	154	134.4 Å²	134.4	71%	0.713	73%	0.731	S	S	*	*			trans	-74.5	69.9	150.4	-77	-83.1	0	0	105.6	K24 N28	K24-H26 PolarHBondContact O-N 2.63Å; H26-N28 PolarHBondContact O-N 3.31Å
27	S	66	Low	66.6	Low	80 Å²	80	134.6 Å²	134.6	56%	0.559	73%	0.732	S	S	*	*			trans	-54.5	100.6	160.5	-47.7	0	0	0	104.4	D25 T29	D25-S27 PolarHBondContact O-N 3.08Å; S27-T29 WeakPolarHBondContact CB-OG1 3.11Å; S27-T29 PolarHBondContact O-N 2.82Å
28	N	65.4	Low	66.4	Low	130 Å²	130	138 Å²	138	70%	0.695	73%	0.733	S	S	*	*			trans	-71	59.3	165.1	178.4	21.1	0	0	107	H26 G30	H26-N28 PolarHBondContact O-N 3.31Å; N28-G30 PolarHBondContact O-N 2.82Å; N28-G30 VanDerWaalsContact O-N 3.17Å
29	T	62.5	Low	66.4	Low	132 Å²	132	135.6 Å²	135.6	81%	0.81	73%	0.734	S	S	*	*	T	Hydrogen-bonded Turn	trans	-84.9	34.1	170.4	-27.5	0	0	0	108.9	S27	S27-T29 WeakPolarHBondContact CB-OG1 3.11Å; S27-T29 PolarHBondContact O-N 2.82Å
30	G	62.9	Low	66.1	Low	65 Å²	65	138.7 Å²	138.7	67%	0.67	75%	0.745	S	S	*	*	T	Hydrogen-bonded Turn	trans	-122.7	5.3	-175.5	0	0	0	0	113.4	N28	N28-G30 PolarHBondContact O-N 2.82Å; N28-G30 VanDerWaalsContact O-N 3.17Å
31	N	67	Low	65.3	Low	130 Å²	130	141.7 Å²	141.7	70%	0.695	76%	0.762	S	S	*	*	S	Bend	trans	-130.8	44.8	179	-162.1	59.5	0	0	113.8
32	E	64.9	Low	65.4	Low	178 Å²	178	145.7 Å²	145.7	83%	0.832	78%	0.775	S	S	*	*			trans	-136.5	17.1	165.4	-69.8	-174.8	-178.5	0	113.6	K34	E32-K34 PolarHBondContact O-N 3.47Å
33	S	65.9	Low	65.6	Low	122 Å²	122	146.7 Å²	146.7	85%	0.853	78%	0.78	S	S	*	*			trans	-72.9	68.1	155.3	-64.5	0	0	0	108.1	K35	S33-K35 PolarHBondContact O-N 3.35Å
34	K	69.6	Low	65.5	Low	182 Å²	182	145.2 Å²	145.2	79%	0.791	78%	0.781	S	S	*	*			trans	-36.3	116	155	55.2	-165.2	176.8	-178.6	106.7	E32 A36	E32-K34 PolarHBondContact O-N 3.47Å; K34-A36 PolarHBondContact O-N 3.02Å
35	K	67.8	Low	65.3	Low	186 Å²	186	143.9 Å²	143.9	81%	0.809	78%	0.784	S	S	*	*			trans	-52.4	96.8	157.1	-64.4	-82.2	-172.8	179.1	104.4	S33 D37	S33-K35 PolarHBondContact O-N 3.35Å; K35-D37 VanDerWaalsContact C-N 3.27Å; K35-D37 PolarHBondContact O-N 3.03Å
36	A	65.4	Low	65.1	Low	89 Å²	89	143.2 Å²	143.2	74%	0.736	78%	0.781	S	S	*	*			trans	-73	104.4	153.7	0	0	0	0	102.1	K34 D38	K34-A36 PolarHBondContact O-N 3.02Å; A36-D38 PolarHBondContact O-N 3.25Å
37	D	70.2	Confident	65.1	Low	144 Å²	144	142.5 Å²	142.5	77%	0.77	79%	0.786	S	S	*	*			trans	-47.1	127.9	165.4	-69.2	-60.1	0	0	107.1	K35 P39	K35-D37 VanDerWaalsContact C-N 3.27Å; K35-D37 PolarHBondContact O-N 3.03Å; D37-P39 VanDerWaalsContact O-CD 3.3Å; D37-P39 WeakPolarHBondContact O-CD 3.49Å; D37-P39 VanDerWaalsContact O-N 3.13Å
38	D	65.3	Low	65	Low	140 Å²	140	146.9 Å²	146.9	75%	0.749	80%	0.802	S	S	*	*			trans	-46.4	113.4	173.9	-169	15.1	0	0	108.6	A36 E40	A36-D38 PolarHBondContact O-N 3.25Å; D38-E40 PolarHBondContact O-N 3.15Å
39	P	68.7	Low	65	Low	114 Å²	114	148.2 Å²	148.2	74%	0.74	81%	0.81	S	S	*	*			trans	-73.1	92.8	164.6	30.3	-26.3	0	0	105.4	D37 E41	D37-P39 VanDerWaalsContact O-CD 3.3Å; D37-P39 WeakPolarHBondContact O-CD 3.49Å; D37-P39 VanDerWaalsContact O-N 3.13Å; P39-E41 PolarHBondContact O-N 2.84Å
40	E	62.6	Low	65.2	Low	185 Å²	185	149.6 Å²	149.6	86%	0.864	81%	0.81	S	S	*	*			trans	-61.3	87.7	160.9	-164.6	178.9	-143.3	0	107.3	D38	D38-E40 PolarHBondContact O-N 3.15Å
41	E	52.1	Low	65.4	Low	260 Å²	260	157.3 Å²	157.3	100%	1.215	82%	0.823	S	S	*	*			trans	-159.2	0	155.9	-145.2	-179.1	-178.2	0	112.6	P39	P39-E41 PolarHBondContact O-N 2.84Å

Retrieved 41 of 41 residues in 102.8 ms (Link to these results)

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