Q99PV4_RAT Loading...

Interleukin 1 receptor antagonist

AlphaFold DB , UniProt , Accession Q99PV4, Species RAT (Rattus norvegicus, Rat), Gene Il1rn, Length 24 aa.

						>Q99PV4_RAT|Q99PV4|Il1rn
KMQAFRIWDTNQKDTKLQLEEVNI
					

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(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	K	81.8	Confident	83.4	Confident	171 Å²	171	109.5 Å²	109.5	74%	0.743	53%	0.533	S	S	*	.				0	137.4	0	-73.9	172.4	179.9	166.1	0	107.7	V22 I24	K1-V22 CarbonylContact O-C 3.51Å; K1-V22 PolarHBondContact N-O 2.95Å; K1-V22 PolarHBondContact O-N 2.8Å; K1-V22 WeakPolarHBondContact O-CA 3.38Å; K1-I24 HydrophobicContact CD-CB 4.47Å; K1-I24 HydrophobicContact CD-CD1 4.18Å
2	M	87	Confident	82.3	Confident	123 Å²	123	114 Å²	114	61%	0.606	55%	0.553	S	S	*	*	E	Extended strand (participates in β ladder)	trans	-81.6	135.7	177	-65.1	-71	177.6	0	0	110.1	E20 E21	M2-E20 WeakPolarHBondContact CA-O 3.42Å; M2-E21 HydrophobicContact CE-CG 3.13Å; M2-E21 WeakPolarHBondContact CE-OE1 3.18Å; M2-E21 HydrophobicContact SD-CB 4.3Å; M2-E21 HydrophobicContact SD-CG 3.38Å; M2-E21 WeakPolarHBondContact SD-CG 3.42Å
3	Q	85.9	Confident	81.5	Confident	84 Å²	84	118.5 Å²	118.5	39%	0.393	57%	0.568	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-124.8	146.3	169.5	-64	-169.5	-48.4	0	0	110.8	F5 E20 V22	Q3-F5 HydrophobicContact CB-CE2 3.83Å; Q3-F5 HydrophobicContact CB-CZ 3.95Å; Q3-E20 PolarHBondContact N-O 3.21Å; Q3-E20 PolarHBondContact O-N 2.9Å; Q3-V22 HydrophobicContact CG-CB 4.07Å; Q3-V22 HydrophobicContact CG-CG2 3.76Å; Q3-V22 HydrophobicContact CB-CG2 3.65Å; Q3-V22 HydrophobicContact CB-CB 4.49Å
4	A	88.3	Confident	80.4	Confident	70 Å²	70	117.1 Å²	117.1	58%	0.579	57%	0.565	S	S	*	*	E	Extended strand (participates in β ladder)	trans	-98.9	128.1	176.9	0	0	0	0	0	110.1	Q18 L19	A4-Q18 CarbonylContact C-O 3.58Å; A4-Q18 WeakPolarHBondContact CA-O 3.34Å; A4-L19 HydrophobicContact CB-CD2 3.75Å
5	F	85.2	Confident	80.1	Confident	76 Å²	76	114.7 Å²	114.7	33%	0.333	56%	0.561	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-113.4	136.3	176.8	-61.3	-83.7	0	0	0	110	Q3 I7 Q18 E20 V22	Q3-F5 HydrophobicContact CB-CE2 3.83Å; Q3-F5 HydrophobicContact CB-CZ 3.95Å; F5-I7 HydrophobicContact CB-CG1 4.38Å; F5-Q18 PolarHBondContact N-O 2.74Å; F5-Q18 PolarHBondContact O-N 2.92Å; F5-E20 HydrophobicContact CD2-CB 4.27Å; F5-E20 HydrophobicContact CD2-CG 4.14Å; F5-E20 HydrophobicContact CE2-CB 4.04Å; F5-E20 HydrophobicContact CE2-CG 4.35Å; F5-V22 HydrophobicContact CE2-CG2 3.91Å; F5-V22 HydrophobicContact CZ-CG2 3.97Å
6	R	85.6	Confident	80.2	Confident	167 Å²	167	115.2 Å²	115.2	63%	0.63	56%	0.559	S	S	*	*	E	Extended strand (participates in β ladder)	trans	-88.1	120.1	167.2	-178	174.6	-70.6	158	-0.7	107.7	W8 T15	R6-W8 HydrophobicContact CG-CH2 4.45Å; R6-W8 HydrophobicContact CG-CZ3 4.32Å; R6-T15 HydrophobicContact CG-CG2 3.92Å
7	I	83.9	Confident	80.6	Confident	66 Å²	66	116.6 Å²	116.6	34%	0.338	57%	0.569	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-115.1	132.7	178.4	-55.3	177	0	0	0	107.7	F5 T15 K16 Q18	F5-I7 HydrophobicContact CB-CG1 4.38Å; I7-T15 WeakPolarHBondContact O-CA 3.42Å; I7-K16 PolarHBondContact N-O 3.03Å; I7-K16 PolarHBondContact O-N 2.9Å; I7-Q18 HydrophobicContact CD1-CB 3.47Å; I7-Q18 VanDerWaalsContact CD1-CB 3.47Å; I7-Q18 HydrophobicContact CD1-CG 3.92Å; I7-Q18 HydrophobicContact CG1-CB 4.21Å
8	W	84.1	Confident	80.8	Confident	162 Å²	162	114.9 Å²	114.9	61%	0.614	56%	0.56	S	S	*	*	E	Extended strand (participates in β ladder)	trans	-84.3	131	169	-81.2	-94.4	0	0	0	108.9	R6 T15	R6-W8 HydrophobicContact CG-CH2 4.45Å; R6-W8 HydrophobicContact CG-CZ3 4.32Å; W8-T15 HydrophobicContact CD2-CG2 4.03Å; W8-T15 HydrophobicContact CG-CG2 4.09Å; W8-T15 HydrophobicContact CZ2-CG2 4.24Å
9	D	78.1	Confident	81.3	Confident	43 Å²	43	115.9 Å²	115.9	23%	0.23	57%	0.567	C	S	.	*			trans	-55.9	142.5	163.6	-168.2	-51.1	0	0	0	108.4	N11 Q12 D14 K16	D9-N11 PolarHBondContact O-N 2.67Å; D9-N11 PolarHBondContact OD1-N 3.01Å; D9-N11 PolarHBondContact OD1-ND2 2.91Å; D9-Q12 PolarHBondContact O-N 2.95Å; D9-Q12 WeakPolarHBondContact O-CA 3.41Å; D9-D14 WeakPolarHBondContact CB-O 3.43Å; D9-D14 PolarHBondContact N-O 3.42Å; D9-K16 IonicContact OD2-NZ 3.91Å
10	T	77.3	Confident	81.6	Confident	133 Å²	133	114.2 Å²	114.2	82%	0.816	56%	0.558	S	S	*	*	T	Hydrogen-bonded Turn	trans	-49.6	-26.8	171.9	42.8	0	0	0	0	113.9	Q12	T10-Q12 VanDerWaalsContact C-N 3.32Å
11	N	80.7	Confident	81.9	Confident	109 Å²	109	116.4 Å²	116.4	58%	0.583	57%	0.567	S	S	*	*	T	Hydrogen-bonded Turn	trans	-86.1	0	175.4	-65	-52.5	0	0	0	113.8	D9 K13	D9-N11 PolarHBondContact O-N 2.67Å; D9-N11 PolarHBondContact OD1-N 3.01Å; D9-N11 PolarHBondContact OD1-ND2 2.91Å; N11-K13 HydrophobicContact CB-CD 4.36Å; N11-K13 HydrophobicContact CB-CG 4.43Å; N11-K13 WeakPolarHBondContact O-CG 3.48Å; N11-K13 PolarHBondContact O-N 2.81Å
12	Q	69.6	Low	81.8	Confident	164 Å²	164	109.9 Å²	109.9	77%	0.766	54%	0.541	S	S	*	.	S	Bend	trans	52.8	12.5	-176.4	-57.7	-176.7	5.9	0	0	115.4	D9 T10	D9-Q12 PolarHBondContact O-N 2.95Å; D9-Q12 WeakPolarHBondContact O-CA 3.41Å; T10-Q12 VanDerWaalsContact C-N 3.32Å
13	K	71.8	Confident	81.3	Confident	172 Å²	172	111.9 Å²	111.9	75%	0.748	55%	0.554	S	S	*	*	S	Bend	trans	-81.1	-32.1	-177	-73.5	173.8	-172.9	-177.2	0	112.3	N11	N11-K13 HydrophobicContact CB-CD 4.36Å; N11-K13 HydrophobicContact CB-CG 4.43Å; N11-K13 WeakPolarHBondContact O-CG 3.48Å; N11-K13 PolarHBondContact O-N 2.81Å
14	D	66.2	Low	80.1	Confident	99 Å²	99	114.9 Å²	114.9	53%	0.529	57%	0.572	S	S	.	*			trans	-133.3	130.3	-177.3	-64.7	-45.7	0	0	0	111.5	D9	D9-D14 WeakPolarHBondContact CB-O 3.43Å; D9-D14 PolarHBondContact N-O 3.42Å
15	T	76.1	Confident	79.7	Confident	82 Å²	82	117.2 Å²	117.2	50%	0.503	57%	0.572	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-87.3	122.8	162.6	31.4	0	0	0	0	109.4	R6 I7 W8	R6-T15 HydrophobicContact CG-CG2 3.92Å; I7-T15 WeakPolarHBondContact O-CA 3.42Å; W8-T15 HydrophobicContact CD2-CG2 4.03Å; W8-T15 HydrophobicContact CG-CG2 4.09Å; W8-T15 HydrophobicContact CZ2-CG2 4.24Å
16	K	82.4	Confident	79.5	Confident	122 Å²	122	119.3 Å²	119.3	53%	0.53	58%	0.584	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-106.2	143.9	175.4	-64.2	179	-175.5	167.6	0	109.9	I7 D9	I7-K16 PolarHBondContact N-O 3.03Å; I7-K16 PolarHBondContact O-N 2.9Å; D9-K16 IonicContact OD2-NZ 3.91Å
17	L	85.6	Confident	79.1	Confident	140 Å²	140	116.7 Å²	116.7	73%	0.733	58%	0.582	S	S	*	*	E	Extended strand (participates in β ladder)	trans	-91.2	122.2	168.8	-72	169.5	0	0	0	108
18	Q	84.9	Confident	78.8	Confident	86 Å²	86	119.6 Å²	119.6	40%	0.402	60%	0.596	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-111.6	131.7	175.3	-179.6	155	-32.4	0	0	108.8	A4 F5 I7 E20	A4-Q18 CarbonylContact C-O 3.58Å; A4-Q18 WeakPolarHBondContact CA-O 3.34Å; F5-Q18 PolarHBondContact N-O 2.74Å; F5-Q18 PolarHBondContact O-N 2.92Å; I7-Q18 HydrophobicContact CD1-CB 3.47Å; I7-Q18 VanDerWaalsContact CD1-CB 3.47Å; I7-Q18 HydrophobicContact CD1-CG 3.92Å; I7-Q18 HydrophobicContact CG1-CB 4.21Å; Q18-E20 HydrophobicContact CG-CG 3.93Å; Q18-E20 PolarHBondContact NE2-OE1 2.82Å
19	L	89.5	Confident	78.5	Confident	134 Å²	134	117 Å²	117	70%	0.702	60%	0.595	S	S	*	*	E	Extended strand (participates in β ladder)	trans	-102.8	125.9	174.3	-70.2	171.4	0	0	0	108.1	A4	A4-L19 HydrophobicContact CB-CD2 3.75Å
20	E	89	Confident	78.5	Confident	80 Å²	80	121.9 Å²	121.9	37%	0.374	62%	0.619	S	S	.	*	E	Extended strand (participates in β ladder)	trans	-127.6	147.2	177.7	-58.2	-173.5	170.5	0	0	111.4	M2 Q3 F5 Q18 V22	M2-E20 WeakPolarHBondContact CA-O 3.42Å; Q3-E20 PolarHBondContact N-O 3.21Å; Q3-E20 PolarHBondContact O-N 2.9Å; F5-E20 HydrophobicContact CD2-CB 4.27Å; F5-E20 HydrophobicContact CD2-CG 4.14Å; F5-E20 HydrophobicContact CE2-CB 4.04Å; F5-E20 HydrophobicContact CE2-CG 4.35Å; Q18-E20 HydrophobicContact CG-CG 3.93Å; Q18-E20 PolarHBondContact NE2-OE1 2.82Å; E20-V22 PolarHBondContact O-N 3.25Å
21	E	86.9	Confident	78.6	Confident	161 Å²	161	121.1 Å²	121.1	75%	0.752	61%	0.605	S	S	*	*	E	Extended strand (participates in β ladder)	trans	-73.2	106.5	166.9	-76.9	-170.6	142	0	0	109.5	M2	M2-E21 HydrophobicContact CE-CG 3.13Å; M2-E21 WeakPolarHBondContact CE-OE1 3.18Å; M2-E21 HydrophobicContact SD-CB 4.3Å; M2-E21 HydrophobicContact SD-CG 3.38Å; M2-E21 WeakPolarHBondContact SD-CG 3.42Å
22	V	80.1	Confident	78.5	Confident	34 Å²	34	122.1 Å²	122.1	21%	0.206	61%	0.607	C	S	.	*			trans	-97.1	116.1	173.2	-169.7	0	0	0	0	108.3	K1 Q3 F5 E20 I24	K1-V22 CarbonylContact O-C 3.51Å; K1-V22 PolarHBondContact N-O 2.95Å; K1-V22 PolarHBondContact O-N 2.8Å; K1-V22 WeakPolarHBondContact O-CA 3.38Å; Q3-V22 HydrophobicContact CG-CB 4.07Å; Q3-V22 HydrophobicContact CG-CG2 3.76Å; Q3-V22 HydrophobicContact CB-CG2 3.65Å; Q3-V22 HydrophobicContact CB-CB 4.49Å; F5-V22 HydrophobicContact CE2-CG2 3.91Å; F5-V22 HydrophobicContact CZ-CG2 3.97Å; E20-V22 PolarHBondContact O-N 3.25Å; V22-I24 HydrophobicContact CB-CG1 4.18Å; V22-I24 HydrophobicContact CG1-CD1 4.17Å; V22-I24 HydrophobicContact CG1-CG1 3.54Å; V22-I24 PolarHBondContact O-N 3.01Å
23	N	75.3	Confident	79.2	Confident	165 Å²	165	118.6 Å²	118.6	88%	0.882	59%	0.593	S	S	*	*			trans	-84.4	90.7	172.3	-152.3	12.7	0	0	0	107.8
24	I	62.5	Low	79.9	Confident	148 Å²	148	113.7 Å²	113.7	76%	0.759	58%	0.579	S	S	*	*			trans	-93.9	0	176.4	-52.7	175	0	0	0	108.6	K1 V22	K1-I24 HydrophobicContact CD-CB 4.47Å; K1-I24 HydrophobicContact CD-CD1 4.18Å; V22-I24 HydrophobicContact CB-CG1 4.18Å; V22-I24 HydrophobicContact CG1-CD1 4.17Å; V22-I24 HydrophobicContact CG1-CG1 3.54Å; V22-I24 PolarHBondContact O-N 3.01Å

Retrieved 24 of 24 residues in 55.6 ms (Link to these results)

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