X5D926_HUMAN Loading...

Glutathione peroxidase 1 isoform A

AlphaFold DB , UniProt , Accession X5D926, Species HUMAN (Homo sapiens, Human), Gene GPX1, Length 48 aa.

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Site Residue pLDDT pLDDT confidence pLDDT10 pLDDT10 confidence SASA SASA [Ų] SASA10 SASA10 [Ų] RSA RSA unformatted RSA10 RSA10 unformatted Surface Surface10 (not used) Disorder (not used) Disorder Sec. str. Secondary structure Isomer Phi (φ) Psi (ψ) Omega (ω) Chi 1 (χ1) Chi 2 (χ2) Chi 3 (χ3) Chi 4 (χ4) Chi 5 (χ5) Tau (τ) Contacts (colored by PAE) Contact details
1M64.9Low67Low193 Ų19393.8 Ų93.895%0.95160%0.595SS**  0-47.60-66.9-129.4-167.300113.4A4 R5M1-A4 PolarHBondContact O-N 3.05Å; M1-R5 PolarHBondContact O-N 2.92Å
2C70.9Confident66.4Low97 Ų9789.6 Ų89.666%0.65558%0.575SS**Hα-helixtrans-59.6-46.3178.3-77.20000114.4A4 R5 L6C2-A4 PolarHBondContact O-N 3.49Å; C2-A4 VanDerWaalsContact C-N 3.32Å; C2-R5 PolarHBondContact O-N 3.41Å; C2-L6 WeakPolarHBondContact O-CG 3.38Å; C2-L6 PolarHBondContact O-N 2.9Å
3A67.1Low66Low77 Ų7787.8 Ų87.864%0.63657%0.573SS**Hα-helixtrans-61.7-37.7-179.700000113.1L6 A7A3-L6 PolarHBondContact O-N 3.22Å; A3-A7 WeakPolarHBondContact O-CB 3.39Å; A3-A7 PolarHBondContact O-N 3.39Å
4A69Low67Low70 Ų7094.1 Ų94.158%0.57959%0.591SS**Hα-helixtrans-68.5-36.4176.600000112.4M1 C2 A8M1-A4 PolarHBondContact O-N 3.05Å; C2-A4 PolarHBondContact O-N 3.49Å; C2-A4 VanDerWaalsContact C-N 3.32Å; A4-A8 WeakPolarHBondContact O-CB 3.34Å; A4-A8 PolarHBondContact O-N 2.91Å
5R68.3Low68.6Low181 Ų18190.2 Ų90.268%0.68357%0.568SS**Hα-helixtrans-68-39.9173.8-74.7179.9174.5163.8-1112.1M1 C2 A8 A9M1-R5 PolarHBondContact O-N 2.92Å; C2-R5 PolarHBondContact O-N 3.41Å; R5-A8 PolarHBondContact O-N 2.96Å; R5-A9 WeakPolarHBondContact O-CB 3.33Å; R5-A9 PolarHBondContact O-N 3.36Å
6L68.8Low70.2Confident124 Ų12488.1 Ų88.165%0.64955%0.554SS**Hα-helixtrans-65.6-42.2175.5-74.6160.5000111.6C2 A3 A9 A10C2-L6 WeakPolarHBondContact O-CG 3.38Å; C2-L6 PolarHBondContact O-N 2.9Å; A3-L6 PolarHBondContact O-N 3.22Å; L6-A9 PolarHBondContact O-N 3.22Å; L6-A10 WeakPolarHBondContact O-CB 3.32Å; L6-A10 PolarHBondContact O-N 3.42Å
7A67.5Low71.6Confident61 Ų6186.8 Ų86.850%0.50454%0.537SS..Hα-helixtrans-64.9-41.6175.500000112.4A3 A10 A11A3-A7 WeakPolarHBondContact O-CB 3.39Å; A3-A7 PolarHBondContact O-N 3.39Å; A7-A10 PolarHBondContact O-N 3.39Å; A7-A11 WeakPolarHBondContact O-CB 3.34Å; A7-A11 PolarHBondContact O-N 3.18Å
8A67Low72.8Confident62 Ų6285.1 Ų85.151%0.51253%0.532SS..Hα-helixtrans-65.7-38.8175.300000112.4A4 R5 A12A4-A8 WeakPolarHBondContact O-CB 3.34Å; A4-A8 PolarHBondContact O-N 2.91Å; R5-A8 PolarHBondContact O-N 2.96Å; A8-A12 WeakPolarHBondContact O-CB 3.45Å; A8-A12 PolarHBondContact O-N 2.88Å
9A65.9Low73.9Confident60 Ų6087.2 Ų87.250%0.49653%0.533SS..Hα-helixtrans-66.8-40.917500000112.1R5 L6 A12 A13R5-A9 WeakPolarHBondContact O-CB 3.33Å; R5-A9 PolarHBondContact O-N 3.36Å; L6-A9 PolarHBondContact O-N 3.22Å; A9-A12 PolarHBondContact O-N 3.04Å; A9-A13 WeakPolarHBondContact O-CB 3.46Å; A9-A13 PolarHBondContact O-N 2.92Å
10A64.9Low75.1Confident51 Ų5186.5 Ų86.542%0.42153%0.532SS..Hα-helixtrans-66.5-41.5175.400000112.2L6 A7 A12 A13 Q14L6-A10 WeakPolarHBondContact O-CB 3.32Å; L6-A10 PolarHBondContact O-N 3.42Å; A7-A10 PolarHBondContact O-N 3.39Å; A10-A12 VanDerWaalsContact C-N 3.34Å; A10-A13 PolarHBondContact O-N 3.43Å; A10-Q14 WeakPolarHBondContact O-CG 3.36Å; A10-Q14 PolarHBondContact O-N 2.93Å
11A62.2Low76.1Confident56 Ų5685.2 Ų85.246%0.46353%0.531SS..Hα-helixtrans-66.6-35.8175.400000112.3A7 Q14 S15A7-A11 WeakPolarHBondContact O-CB 3.34Å; A7-A11 PolarHBondContact O-N 3.18Å; A11-Q14 PolarHBondContact O-N 3.46Å; A11-S15 PolarHBondContact O-N 3.21Å
12A60.8Low77.7Confident43 Ų4384.1 Ų84.136%0.35552%0.516SS..Hα-helixtrans-65.3-42.7170.700000111.1A8 A9 A10 Q14 S15 A18A8-A12 WeakPolarHBondContact O-CB 3.45Å; A8-A12 PolarHBondContact O-N 2.88Å; A9-A12 PolarHBondContact O-N 3.04Å; A10-A12 VanDerWaalsContact C-N 3.34Å; A12-Q14 PolarHBondContact O-N 2.97Å; A12-S15 PolarHBondContact O-N 3.41Å; A12-S15 VanDerWaalsContact O-O 3.12Å; A12-A18 WeakPolarHBondContact O-CB 3.44Å
13A60.3Low79Confident66 Ų6682.2 Ų82.255%0.54550%0.502SS..Hα-helixtrans-64.8-19.1176.800000113.9A9 A10A9-A13 WeakPolarHBondContact O-CB 3.46Å; A9-A13 PolarHBondContact O-N 2.92Å; A10-A13 PolarHBondContact O-N 3.43Å
14Q79.9Confident80.4Confident176 Ų17687.4 Ų87.482%0.82252%0.518SS*.THydrogen-bonded Turntrans-90.7-3.4174.5-71.8174.9-18.100113.6A10 A11 A12A10-Q14 WeakPolarHBondContact O-CG 3.36Å; A10-Q14 PolarHBondContact O-N 2.93Å; A11-Q14 PolarHBondContact O-N 3.46Å; A12-Q14 PolarHBondContact O-N 2.97Å
15S91.1Very high81.8Confident36 Ų3689.1 Ų89.125%0.25253%0.532SS..SBendtrans-115.9153.3-177.8-177.20000111.4A11 A12 Y17 A18 F19A11-S15 PolarHBondContact O-N 3.21Å; A12-S15 PolarHBondContact O-N 3.41Å; A12-S15 VanDerWaalsContact O-O 3.12Å; S15-Y17 WeakPolarHBondContact OG-CD2 3.12Å; S15-Y17 PolarHBondContact OG-N 3.34Å; S15-Y17 VanDerWaalsContact O-N 3.09Å; S15-Y17 PolarHBondContact O-N 3.09Å; S15-A18 PolarHBondContact O-N 3.09Å; S15-F19 WeakPolarHBondContact O-CE2 3.16Å
16V94Very high83.1Confident57 Ų5782.3 Ų82.335%0.34552%0.519SS..G310 helixtrans-57.7-22.5171-61.30000112.7A18 F19 L32 L40 I42V16-A18 PolarHBondContact O-N 3.2Å; V16-F19 WeakPolarHBondContact O-CD2 3.38Å; V16-F19 PolarHBondContact O-N 3.38Å; V16-F19 VanDerWaalsContact O-N 3.09Å; V16-L32 HydrophobicContact CB-CD1 4.08Å; V16-L32 WeakPolarHBondContact O-CB 3.33Å; V16-L40 HydrophobicContact CG2-CD1 4.35Å; V16-I42 HydrophobicContact CG1-CD1 4.41Å
17Y94.1Very high84.4Confident66 Ų6678.8 Ų78.826%0.25951%0.512SS..G310 helixtrans-68.3-14.3-176.9-55.5-37.5000115S15 L32 R36S15-Y17 WeakPolarHBondContact OG-CD2 3.12Å; S15-Y17 PolarHBondContact OG-N 3.34Å; S15-Y17 VanDerWaalsContact O-N 3.09Å; S15-Y17 PolarHBondContact O-N 3.09Å; Y17-L32 WeakPolarHBondContact CD1-O 3.35Å; Y17-L32 VanDerWaalsContact CD1-O 3.31Å; Y17-R36 HydrophobicContact CE2-CB 4.37Å; Y17-R36 HydrophobicContact CE2-CG 3.98Å; Y17-R36 HydrophobicContact CE1-CB 4.33Å
18A93.3Very high85.8Confident55 Ų5583.3 Ų83.346%0.45552%0.522SS..G310 helixtrans-77.7-8.8172.200000113.7A12 S15 V16A12-A18 WeakPolarHBondContact O-CB 3.44Å; S15-A18 PolarHBondContact O-N 3.09Å; V16-A18 PolarHBondContact O-N 3.2Å
19F94.6Very high87.3Confident126 Ų12682.8 Ų82.855%0.55351%0.514SS*.  trans-105.2155.2-174.5-55.6-83.7000112.2S15 V16 L32S15-F19 WeakPolarHBondContact O-CE2 3.16Å; V16-F19 WeakPolarHBondContact O-CD2 3.38Å; V16-F19 PolarHBondContact O-N 3.38Å; V16-F19 VanDerWaalsContact O-N 3.09Å; F19-L32 HydrophobicContact CB-CD1 4.3Å; F19-L32 PolarHBondContact O-N 2.99Å
20S96.6Very high88.8Confident73 Ų7383.4 Ų83.451%0.5151%0.512SS..EExtended strand (participates in β ladder)trans-134.6157169.361.80000110.1V30S20-V30 WeakPolarHBondContact CA-O 3.46Å; S20-V30 VanDerWaalsContact CB-O 3.24Å; S20-V30 WeakPolarHBondContact CB-O 3.24Å
21A97.5Very high90.3Very high60 Ų6083.7 Ų83.750%0.49651%0.51SS..EExtended strand (participates in β ladder)trans-138.8150.4177.300000110.3P29 V30A21-P29 WeakPolarHBondContact O-CA 3.31Å; A21-V30 PolarHBondContact O-N 3.3Å; A21-V30 VanDerWaalsContact N-O 3.09Å; A21-V30 PolarHBondContact N-O 3.33Å
22R98.1Very high92Very high170 Ų17083.1 Ų83.164%0.64250%0.499SS*.  trans-81.5135.2174.6-72.5-174.5-173.4-86.42.4110.1G27 P29R22-G27 PolarHBondContact NH1-O 3.18Å; R22-P29 HydrophobicContact CG-CG 4.15Å
23P97.9Very high93.7Very high56 Ų5682.3 Ų82.336%0.36450%0.495SS..  trans-61.4156.6173.5-22.333.5000112.5A25 G26 E28 V30P23-A25 VanDerWaalsContact C-N 3.26Å; P23-A25 PolarHBondContact O-N 2.99Å; P23-G26 WeakPolarHBondContact O-CA 3.47Å; P23-G26 PolarHBondContact O-N 3.19Å; P23-E28 WeakPolarHBondContact CD-O 3.31Å; P23-V30 HydrophobicContact CG-CG2 3.88Å
24L97.1Very high95.4Very high187 Ų18783.3 Ų83.398%0.97950%0.498SS*.THydrogen-bonded Turntrans-57.5-38.7176.5179.663000112.5G26L24-G26 PolarHBondContact O-N 3.03Å; L24-G26 VanDerWaalsContact O-N 3.12Å
25A97.7Very high96.3Very high106 Ų10678 Ų7888%0.87648%0.475SS*.THydrogen-bonded Turntrans-70.91.5176.200000113.8P23P23-A25 VanDerWaalsContact C-N 3.26Å; P23-A25 PolarHBondContact O-N 2.99Å
26G95.6Very high96.5Very high38 Ų3885.6 Ų85.639%0.39250%0.498SS..  trans80.9-166.1-171.300000113.1P23 L24P23-G26 WeakPolarHBondContact O-CA 3.47Å; P23-G26 PolarHBondContact O-N 3.19Å; L24-G26 PolarHBondContact O-N 3.03Å; L24-G26 VanDerWaalsContact O-N 3.12Å
27G95.8Very high96.6Very high49 Ų4986.4 Ų86.451%0.50552%0.518SS..  trans95.4-162.6177.600000115.1R22R22-G27 PolarHBondContact NH1-O 3.18Å
28E97.6Very high96.8Very high156 Ų15690.3 Ų90.373%0.72954%0.536SS*.SBendtrans-65.5140.7-176-72.7-55.3127.100112.2P23 V30P23-E28 WeakPolarHBondContact CD-O 3.31Å; E28-V30 PolarHBondContact O-N 3.21Å
29P98.1Very high97Very high52 Ų5294.9 Ų94.934%0.33856%0.558SS.*PPolyproline II helixtrans-58.6132.9173.8-22.533.7000111.9A21 R22A21-P29 WeakPolarHBondContact O-CA 3.31Å; R22-P29 HydrophobicContact CG-CG 4.15Å
30V97.6Very high97.2Very high73 Ų7391.9 Ų91.944%0.44255%0.548SS..EExtended strand (participates in β ladder)trans-91.3122.3174179.70000108.5S20 A21 P23 E28S20-V30 WeakPolarHBondContact CA-O 3.46Å; S20-V30 VanDerWaalsContact CB-O 3.24Å; S20-V30 WeakPolarHBondContact CB-O 3.24Å; A21-V30 PolarHBondContact O-N 3.3Å; A21-V30 VanDerWaalsContact N-O 3.09Å; A21-V30 PolarHBondContact N-O 3.33Å; P23-V30 HydrophobicContact CG-CG2 3.88Å; E28-V30 PolarHBondContact O-N 3.21Å
31S97.1Very high97.3Very high56 Ų5695.3 Ų95.339%0.39256%0.56SS.*EExtended strand (participates in β ladder)trans-73.6129.5173.2176.40000110.5G33 S34S31-G33 PolarHBondContact OG-N 3.23Å; S31-G33 VanDerWaalsContact OG-N 3.13Å; S31-G33 PolarHBondContact O-N 2.85Å; S31-S34 WeakPolarHBondContact O-CB 3.45Å; S31-S34 PolarHBondContact O-N 3.4Å; S31-S34 PolarHBondContact O-OG 2.71Å
32L97Very high97.3Very high44 Ų4498.1 Ų98.123%0.2357%0.565CS.*G310 helixtrans-65.6-19.2172.5-61.5-175.6000112V16 Y17 F19 S34 L35V16-L32 HydrophobicContact CB-CD1 4.08Å; V16-L32 WeakPolarHBondContact O-CB 3.33Å; Y17-L32 WeakPolarHBondContact CD1-O 3.35Å; Y17-L32 VanDerWaalsContact CD1-O 3.31Å; F19-L32 HydrophobicContact CB-CD1 4.3Å; F19-L32 PolarHBondContact O-N 2.99Å; L32-S34 PolarHBondContact O-N 3.13Å; L32-L35 HydrophobicContact CD2-CD1 4.41Å; L32-L35 WeakPolarHBondContact O-CB 3.14Å; L32-L35 PolarHBondContact O-N 2.76Å
33G96.3Very high97.3Very high27 Ų2796.5 Ų96.528%0.27857%0.565SS.*G310 helixtrans-57.9-26.2173.500000113.9S31 L35 R36S31-G33 PolarHBondContact OG-N 3.23Å; S31-G33 VanDerWaalsContact OG-N 3.13Å; S31-G33 PolarHBondContact O-N 2.85Å; G33-L35 PolarHBondContact O-N 3.12Å; G33-R36 PolarHBondContact O-N 3.09Å
34S97.1Very high97.3Very high86 Ų86101.6 Ų101.660%0.60159%0.589SS**G310 helixtrans-63.9-17.4175.164.80000113.8S31 L32S31-S34 WeakPolarHBondContact O-CB 3.45Å; S31-S34 PolarHBondContact O-N 3.4Å; S31-S34 PolarHBondContact O-OG 2.71Å; L32-S34 PolarHBondContact O-N 3.13Å
35L97.3Very high97.3Very high65 Ų6598.9 Ų98.934%0.3458%0.58SS.*G310 helixtrans-98.112.7-177.2-58.5174.3000113.3L32 G33 G37 K38 L40L32-L35 HydrophobicContact CD2-CD1 4.41Å; L32-L35 WeakPolarHBondContact O-CB 3.14Å; L32-L35 PolarHBondContact O-N 2.76Å; G33-L35 PolarHBondContact O-N 3.12Å; L35-G37 PolarHBondContact O-N 2.92Å; L35-K38 VanDerWaalsContact O-CB 3.31Å; L35-K38 WeakPolarHBondContact O-CB 3.45Å; L35-K38 PolarHBondContact O-N 3.3Å; L35-L40 HydrophobicContact CB-CD1 4.22Å; L35-L40 HydrophobicContact CB-CD2 4.08Å; L35-L40 HydrophobicContact CD1-CD1 4.11Å; L35-L40 HydrophobicContact CD1-CD2 3.81Å
36R96.3Very high97.3Very high196 Ų19698.6 Ų98.674%0.7458%0.577SS**THydrogen-bonded Turntrans-54.5131.3178.7-169.1179-172.4107.5-0.6111.1Y17 G33Y17-R36 HydrophobicContact CE2-CB 4.37Å; Y17-R36 HydrophobicContact CE2-CG 3.98Å; Y17-R36 HydrophobicContact CE1-CB 4.33Å; G33-R36 PolarHBondContact O-N 3.09Å
37G96.2Very high97.3Very high74 Ų74102.8 Ų102.876%0.76360%0.601SS**THydrogen-bonded Turntrans88.12.7-176.500000114.2L35L35-G37 PolarHBondContact O-N 2.92Å
38K98.3Very high96.9Very high147 Ų147112.5 Ų112.564%0.63964%0.64SS**SBendtrans-101.1150.3167.4-56.6-58-172.7-178.50110.8L35 L40L35-K38 VanDerWaalsContact O-CB 3.31Å; L35-K38 WeakPolarHBondContact O-CB 3.45Å; L35-K38 PolarHBondContact O-N 3.3Å; K38-L40 HydrophobicContact CB-CD2 4.12Å
39V97.9Very high96.8Very high151 Ų151110.3 Ų110.392%0.91564%0.635SS**  trans-83.4130.5164.81770000107.5
40L97.8Very high96.8Very high64 Ų64113.4 Ų113.434%0.33565%0.651SS.*  trans-116.6130.1-177.1-55.5-178.4000109.9V16 L35 K38V16-L40 HydrophobicContact CG2-CD1 4.35Å; L35-L40 HydrophobicContact CB-CD1 4.22Å; L35-L40 HydrophobicContact CB-CD2 4.08Å; L35-L40 HydrophobicContact CD1-CD1 4.11Å; L35-L40 HydrophobicContact CD1-CD2 3.81Å; K38-L40 HydrophobicContact CB-CD2 4.12Å
41L98.2Very high96.7Very high145 Ų145115.6 Ų115.676%0.75966%0.662SS**  trans-103.8127.1162.1-178.363.9000107.4E43L41-E43 WeakPolarHBondContact CD2-OE1 3.41Å; L41-E43 HydrophobicContact CG-CG 4.19Å
42I97.7Very high96.7Very high119 Ų119119.1 Ų119.161%0.6168%0.678SS**  trans-119.6122.6-178.1-61.5170.4000107.6V16V16-I42 HydrophobicContact CG1-CD1 4.41Å
43E98.3Very high96.7Very high136 Ų136123.8 Ų123.864%0.63671%0.706SS**  trans-125.8139.7-177.2-62.8-176.8177.400110.7L41L41-E43 WeakPolarHBondContact CD2-OE1 3.41Å; L41-E43 HydrophobicContact CG-CG 4.19Å
44N97.6Very high96.7Very high163 Ų163130.3 Ų130.387%0.87274%0.735SS**  trans-83.4124165.562.8-73.1000108.9
45V97.6Very high96.7Very high130 Ų130133.4 Ų133.479%0.78874%0.744SS**  trans-111.2155.8-178.3-62.60000111.6
46A97.4Very high96.6Very high99 Ų99138.7 Ų138.782%0.81878%0.775SS**  trans-147.5148.9170.800000109.7
47S95.9Very high96.6Very high126 Ų126133.9 Ų133.988%0.88178%0.778SS**  trans-97151173.2-570000110.5
48L86.9Confident96.7Very high253 Ų253139.4 Ų139.4100%1.32578%0.78SS**  trans-88.50174.2-71.7167.3000111.9

Retrieved 48 of 48 residues in 13.8 ms (Link to these results)