X5M5N4_CAEEL Loading...

DNA-directed RNA polymerases I, II, and III subunit RPABC4

AlphaFold DB , UniProt , Accession X5M5N4, Species CAEEL (Caenorhabditis elegans), Gene rpb-12, Length 26 aa.

						>X5M5N4_CAEEL|X5M5N4|rpb-12
MKSNRKTPFAAENADIVFYTRKDAES
					

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(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	47.6	Very low	59.4	Low	247 Å²	247	149.2 Å²	149.2	100%	1.217	78%	0.782	S	S	*	*				0	110.2	0	-65.3	169.9	177.6	0	0	108.5
2	K	48.6	Very low	59.1	Low	208 Å²	208	151.1 Å²	151.1	90%	0.904	78%	0.784	S	S	*	*			trans	-147.6	118.3	171.7	-96.3	-172.4	-178.8	179.9	0	109
3	S	57.6	Low	59	Low	106 Å²	106	149.5 Å²	149.5	74%	0.741	78%	0.777	S	S	*	*			trans	-164.6	81.6	138.9	50.6	0	0	0	0	108.1	R5	S3-R5 PolarHBondContact O-N 3.12Å
4	N	63.5	Low	58.9	Low	165 Å²	165	145.2 Å²	145.2	88%	0.882	77%	0.774	S	S	*	*			trans	-72.7	72.3	163.4	-87.5	54.8	0	0	0	108.2	K6	N4-K6 PolarHBondContact O-N 2.88Å
5	R	68.4	Low	58.9	Low	196 Å²	196	144.5 Å²	144.5	74%	0.74	77%	0.771	S	S	*	*			trans	-77.6	81.1	178.6	-147.1	177.7	56.5	80.1	9.2	107.4	S3 T7	S3-R5 PolarHBondContact O-N 3.12Å; R5-T7 VanDerWaalsContact NH1-CG2 3.27Å; R5-T7 PolarHBondContact O-N 2.84Å; R5-T7 VanDerWaalsContact O-N 3.12Å
6	K	60.8	Low	58.9	Low	193 Å²	193	143.4 Å²	143.4	84%	0.839	76%	0.763	S	S	*	*			trans	-50.8	120.2	158.9	-72.9	-168.7	177.9	-172.3	0	105.5	N4 P8	N4-K6 PolarHBondContact O-N 2.88Å; K6-P8 VanDerWaalsContact C-CD 3.42Å; K6-P8 WeakPolarHBondContact O-CD 3.04Å
7	T	67	Low	59.1	Low	69 Å²	69	140.2 Å²	140.2	42%	0.423	75%	0.75	S	S	.	*			trans	-97.9	90	168.3	46.8	0	0	0	0	105.9	R5 F9	R5-T7 VanDerWaalsContact NH1-CG2 3.27Å; R5-T7 PolarHBondContact O-N 2.84Å; R5-T7 VanDerWaalsContact O-N 3.12Å; T7-F9 PolarHBondContact O-N 2.97Å
8	P	61.6	Low	59.1	Low	98 Å²	98	140.9 Å²	140.9	64%	0.636	75%	0.746	S	S	*	*	T	Hydrogen-bonded Turn	trans	-67.2	-0.3	-174.6	23.7	-31.6	0	0	0	114.3	K6	K6-P8 VanDerWaalsContact C-CD 3.42Å; K6-P8 WeakPolarHBondContact O-CD 3.04Å
9	F	56.8	Low	59	Low	193 Å²	193	143.7 Å²	143.7	85%	0.846	75%	0.747	S	S	*	*	T	Hydrogen-bonded Turn	trans	-142.5	33.7	-174.3	-55.4	-73.6	0	0	0	113	T7	T7-F9 PolarHBondContact O-N 2.97Å
10	A	61.3	Low	59	Low	68 Å²	68	142.8 Å²	142.8	56%	0.562	75%	0.747	S	S	*	*			trans	-85.5	120.6	175.2	0	0	0	0	0	110.7
11	A	59.8	Low	59.1	Low	98 Å²	98	146.3 Å²	146.3	81%	0.81	75%	0.751	S	S	*	*	S	Bend	trans	93	-0.8	146.2	0	0	0	0	0	122.1
12	E	56.3	Low	59.5	Low	172 Å²	172	143 Å²	143	80%	0.804	73%	0.729	S	S	*	*	S	Bend	trans	-109.3	-10	177.5	-81.3	-166.2	94	0	0	116.8
13	N	57.5	Low	60	Low	131 Å²	131	139.7 Å²	139.7	70%	0.701	72%	0.722	S	S	*	*	S	Bend	trans	-112.7	14.5	-174.4	-67.4	-25.9	0	0	0	115.1	I16	N13-I16 WeakPolarHBondContact OD1-CD1 3.45Å
14	A	58	Low	60.1	Low	89 Å²	89	139 Å²	139	74%	0.736	72%	0.723	S	S	*	*	S	Bend	trans	-86.6	-19.6	176.1	0	0	0	0	0	113.2
15	D	58.3	Low	59.9	Low	134 Å²	134	140 Å²	140	72%	0.717	72%	0.722	S	S	*	*	S	Bend	trans	-98.2	-3.9	-177.1	-110.3	-95.8	0	0	0	113.9	V17	D15-V17 VanDerWaalsContact C-N 3.27Å; D15-V17 PolarHBondContact O-N 3.4Å
16	I	60.1	Low	58.9	Low	128 Å²	128	138.7 Å²	138.7	66%	0.656	74%	0.743	S	S	*	*	S	Bend	trans	-87.8	3.8	-174.3	-52.9	176	0	0	0	112.2	N13	N13-I16 WeakPolarHBondContact OD1-CD1 3.45Å
17	V	61.7	Low	58.8	Low	89 Å²	89	136 Å²	136	54%	0.539	74%	0.738	S	S	.	*	S	Bend	trans	-122.4	128.6	170.5	-168.3	0	0	0	0	106	D15	D15-V17 VanDerWaalsContact C-N 3.27Å; D15-V17 PolarHBondContact O-N 3.4Å
18	F	58.3	Low	58.4	Low	153 Å²	153	139.5 Å²	139.5	67%	0.671	76%	0.755	S	S	*	*	S	Bend	trans	107.7	33.4	169.7	-51	-69.8	0	0	0	119.8
19	Y	56.9	Low	58.2	Low	194 Å²	194	141.8 Å²	141.8	76%	0.761	76%	0.761	S	S	*	*			trans	-141.7	51.5	145.9	-51.2	-77.5	0	0	0	113.2
20	T	60.5	Low	58.3	Low	124 Å²	124	138.8 Å²	138.8	76%	0.761	76%	0.756	S	S	*	*	S	Bend	trans	-112.2	21.8	160	55.7	0	0	0	0	112.3
21	R	59.8	Low	58.1	Low	217 Å²	217	143.3 Å²	143.3	82%	0.819	77%	0.769	S	S	*	*	S	Bend	trans	-111.8	22.2	171	-63.8	-158.6	-168.2	-174.4	5.6	113.2
22	K	57.3	Low	58	Low	177 Å²	177	146.3 Å²	146.3	77%	0.77	77%	0.766	S	S	*	*	S	Bend	trans	-109.2	-14.7	170.3	-88.3	-126.1	175.2	-177.1	0	113.9
23	D	58.6	Low	58.1	Low	139 Å²	139	144.4 Å²	144.4	74%	0.743	76%	0.763	S	S	*	*	S	Bend	trans	-103.3	1.7	177.9	-56.1	-91.3	0	0	0	113.9
24	A	59.9	Low	58.2	Low	92 Å²	92	145.5 Å²	145.5	76%	0.76	77%	0.768	S	S	*	*	S	Bend	trans	-105.8	7.2	174.9	0	0	0	0	0	113.2
25	E	58.3	Low	58.2	Low	186 Å²	186	150.2 Å²	150.2	87%	0.869	77%	0.771	S	S	*	*			trans	-122.4	54.5	162.5	-166.5	176.2	84	0	0	108.1
26	S	48.8	Very low	58.2	Low	169 Å²	169	151.6 Å²	151.6	100%	1.182	78%	0.776	S	S	*	*			trans	-139.5	0	153.1	-175.1	0	0	0	0	109.7

Retrieved 26 of 26 residues in 68.1 ms (Link to these results)

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