X6RCG6_HUMAN Loading...

La ribonucleoprotein 4B

AlphaFold DB , UniProt , Accession X6RCG6, Species HUMAN (Homo sapiens, Human), Gene LARP4B, Length 57 aa.

						>X6RCG6_HUMAN|X6RCG6|LARP4B
MTSDQDAKVVAEPQTQRVQEGKDSAHLMNGPISQTTSQTSSIPPLSQVPATKVSELN
					

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(Predicted Aligned Error values between residue pairs)

Download Structure PDB PAE Table

Site	Residue	pLDDT	pLDDT confidence	pLDDT₁₀	pLDDT10 confidence	SASA	SASA [Å²]	SASA₁₀	SASA10 [Å²]	RSA	RSA unformatted	RSA₁₀	RSA10 unformatted	Surface	Surface10 (not used)	Disorder (not used)	Disorder	Sec. str.	Secondary structure	Isomer	Phi (φ)	Psi (ψ)	Omega (ω)	Chi 1 (χ₁)	Chi 2 (χ₂)	Chi 3 (χ₃)	Chi 4 (χ₄)	Chi 5 (χ₅)	Tau (τ)	Contacts (colored by PAE)	Contact details
1	M	64.6	Low	73.3	Confident	240 Å²	240	140.3 Å²	140.3	100%	1.182	81%	0.805	S	S	*	*				0	99.3	0	-64.9	-150.9	-64.6	0	0	107.1
2	T	66.7	Low	74.4	Confident	129 Å²	129	142.4 Å²	142.4	79%	0.791	80%	0.802	S	S	*	*			trans	-84.3	112.8	174.4	55.5	0	0	0	0	106.1	D4	T2-D4 PolarHBondContact O-N 3.16Å
3	S	71.8	Confident	74.9	Confident	97 Å²	97	139.7 Å²	139.7	68%	0.678	79%	0.794	S	S	*	*			trans	-81.4	110.4	179.3	-165.5	0	0	0	0	107.6	Q5	S3-Q5 PolarHBondContact O-N 3.48Å; S3-Q5 WeakPolarHBondContact OG-CG 3.3Å; S3-Q5 VanDerWaalsContact OG-CG 3.26Å
4	D	74.1	Confident	75.4	Confident	157 Å²	157	142.4 Å²	142.4	84%	0.84	80%	0.797	S	S	*	*			trans	-71.7	79.8	173.4	-62.7	-49.3	0	0	0	108.7	T2	T2-D4 PolarHBondContact O-N 3.16Å
5	Q	71.6	Confident	75.8	Confident	155 Å²	155	140.9 Å²	140.9	72%	0.724	79%	0.793	S	S	*	*			trans	-113.2	84.3	175.9	-65	-120.4	-51.2	0	0	109.1	S3	S3-Q5 PolarHBondContact O-N 3.48Å; S3-Q5 WeakPolarHBondContact OG-CG 3.3Å; S3-Q5 VanDerWaalsContact OG-CG 3.26Å
6	D	71.9	Confident	76.1	Confident	163 Å²	163	142.8 Å²	142.8	87%	0.872	79%	0.793	S	S	*	*			trans	-156.5	68.3	149	-91.4	-37	0	0	0	109.1	K8	D6-K8 VanDerWaalsContact C-N 3.31Å; D6-K8 PolarHBondContact O-N 2.94Å
7	A	72.7	Confident	76.1	Confident	99 Å²	99	147.9 Å²	147.9	82%	0.818	80%	0.797	S	S	*	*			trans	-74.6	88.1	166.6	0	0	0	0	0	108.8	V9	A7-V9 PolarHBondContact O-N 3.2Å
8	K	76	Confident	76.1	Confident	171 Å²	171	146 Å²	146	74%	0.743	79%	0.791	S	S	*	*			trans	-72.1	107.8	173.2	-175.3	179.8	-174.8	-67.2	0	109.5	D6 V10	D6-K8 VanDerWaalsContact C-N 3.31Å; D6-K8 PolarHBondContact O-N 2.94Å; K8-V10 HydrophobicContact CG-CG2 4.42Å; K8-V10 PolarHBondContact O-N 3.13Å
9	V	76.1	Confident	75.9	Confident	135 Å²	135	147.9 Å²	147.9	82%	0.818	79%	0.794	S	S	*	*			trans	-75	121	171.4	-164.5	0	0	0	0	108.4	A7	A7-V9 PolarHBondContact O-N 3.2Å
10	V	79.5	Confident	75.6	Confident	111 Å²	111	148.9 Å²	148.9	67%	0.673	79%	0.794	S	S	*	*			trans	-103.5	115.3	172.3	-176.3	0	0	0	0	107.3	K8	K8-V10 HydrophobicContact CG-CG2 4.42Å; K8-V10 PolarHBondContact O-N 3.13Å
11	A	81.5	Confident	75.2	Confident	86 Å²	86	145.2 Å²	145.2	71%	0.711	79%	0.792	S	S	*	*	P	Polyproline II helix	trans	-74.8	144.8	171.7	0	0	0	0	0	110.2
12	E	86.6	Confident	75.4	Confident	166 Å²	166	142.8 Å²	142.8	78%	0.776	77%	0.774	S	S	*	*	P	Polyproline II helix	trans	-69.1	127.4	174.9	-170.7	175.9	171.9	0	0	110.1	Q14	E12-Q14 PolarHBondContact O-N 2.72Å
13	P	80.3	Confident	75.1	Confident	107 Å²	107	143.3 Å²	143.3	70%	0.695	77%	0.772	S	S	*	*	P	Polyproline II helix	trans	-66.8	127.9	-179.4	26.4	-32.7	0	0	0	110.6	T15	P13-T15 PolarHBondContact O-N 3.41Å
14	Q	82.9	Confident	74.5	Confident	178 Å²	178	142 Å²	142	83%	0.832	76%	0.763	S	S	*	*	P	Polyproline II helix	trans	-71.5	123.7	174	-63.7	-62.8	-63.5	0	0	109.5	E12 Q16	E12-Q14 PolarHBondContact O-N 2.72Å; Q14-Q16 PolarHBondContact O-N 3.27Å
15	T	81.5	Confident	73.8	Confident	120 Å²	120	138.8 Å²	138.8	74%	0.736	76%	0.758	S	S	*	*			trans	-81	114.7	177.9	-59	0	0	0	0	109.7	P13 R17	P13-T15 PolarHBondContact O-N 3.41Å; T15-R17 PolarHBondContact O-N 2.94Å
16	Q	80.1	Confident	73.2	Confident	171 Å²	171	137.8 Å²	137.8	80%	0.799	75%	0.753	S	S	*	*			trans	-72.9	118.3	170.2	-172.1	172.7	18.1	0	0	109.2	Q14 V18	Q14-Q16 PolarHBondContact O-N 3.27Å; Q16-V18 PolarHBondContact O-N 2.99Å
17	R	76.6	Confident	72.9	Confident	230 Å²	230	136.6 Å²	136.6	87%	0.868	75%	0.746	S	S	*	*			trans	-82.3	110	172.2	-61.4	-67.8	-115.6	157.8	-0.5	108.2	T15	T15-R17 PolarHBondContact O-N 2.94Å
18	V	75.3	Confident	72.6	Confident	113 Å²	113	140.2 Å²	140.2	69%	0.685	75%	0.749	S	S	*	*			trans	-88.1	135.3	166.4	-73.2	0	0	0	0	108.6	Q16 E20	Q16-V18 PolarHBondContact O-N 2.99Å; V18-E20 VanDerWaalsContact O-N 3.1Å; V18-E20 PolarHBondContact O-N 2.82Å
19	Q	72.2	Confident	71.8	Confident	182 Å²	182	138.5 Å²	138.5	85%	0.85	75%	0.748	S	S	*	*			trans	-71.1	105.5	175	-172.3	65.6	77.4	0	0	107.6	G21	Q19-G21 PolarHBondContact O-N 3.12Å; Q19-G21 VanDerWaalsContact O-N 3.12Å
20	E	70.3	Confident	71.3	Confident	167 Å²	167	134.9 Å²	134.9	78%	0.78	74%	0.737	S	S	*	*			trans	-60.3	119.1	170.9	-75.6	179.8	118.7	0	0	107.9	V18 K22	V18-E20 VanDerWaalsContact O-N 3.1Å; V18-E20 PolarHBondContact O-N 2.82Å; E20-K22 PolarHBondContact O-N 2.95Å
21	G	67.9	Low	70.4	Confident	73 Å²	73	136 Å²	136	75%	0.753	75%	0.747	S	S	*	*			trans	-59.1	105.3	-176.9	0	0	0	0	0	109.1	Q19 D23	Q19-G21 PolarHBondContact O-N 3.12Å; Q19-G21 VanDerWaalsContact O-N 3.12Å; G21-D23 PolarHBondContact O-N 3.37Å
22	K	66.9	Low	69.4	Low	188 Å²	188	138.7 Å²	138.7	82%	0.817	75%	0.748	S	S	*	*			trans	-62.7	120.3	175.4	-145.5	170.6	-172	173	0	106.9	E20 S24	E20-K22 PolarHBondContact O-N 2.95Å; K22-S24 PolarHBondContact O-N 3.32Å; K22-S24 VanDerWaalsContact O-N 3.13Å
23	D	61.3	Low	68.3	Low	141 Å²	141	136 Å²	136	75%	0.754	75%	0.748	S	S	*	*			trans	-32.7	116.2	-179	-55.4	-84.6	0	0	0	111.3	G21 A25	G21-D23 PolarHBondContact O-N 3.37Å; D23-A25 PolarHBondContact O-N 3.38Å
24	S	59.9	Low	67.3	Low	68 Å²	68	139.3 Å²	139.3	48%	0.476	75%	0.754	S	S	.	*			trans	-71.2	51.6	177.6	-56.5	0	0	0	0	111.1	K22 H26 L27	K22-S24 PolarHBondContact O-N 3.32Å; K22-S24 VanDerWaalsContact O-N 3.13Å; S24-H26 PolarHBondContact O-N 3.46Å; S24-H26 VanDerWaalsContact O-N 3.16Å; S24-L27 PolarHBondContact O-N 3.49Å; S24-L27 WeakPolarHBondContact O-CG 3.26Å; S24-L27 VanDerWaalsContact O-CG 3.3Å
25	A	58.8	Low	66.1	Low	90 Å²	90	136.9 Å²	136.9	74%	0.744	75%	0.751	S	S	*	*	G	3₁₀ helix	trans	-67.3	-5.7	171.4	0	0	0	0	0	112.2	D23 L27	D23-A25 PolarHBondContact O-N 3.38Å; A25-L27 VanDerWaalsContact C-N 3.27Å; A25-L27 PolarHBondContact O-N 3.1Å
26	H	59.4	Low	65	Low	134 Å²	134	137.4 Å²	137.4	62%	0.62	75%	0.754	S	S	*	*	G	3₁₀ helix	trans	-84.3	7.7	173	54.5	-86	0	0	0	113.6	S24 M28	S24-H26 PolarHBondContact O-N 3.46Å; S24-H26 VanDerWaalsContact O-N 3.16Å; H26-M28 VanDerWaalsContact C-N 3.26Å; H26-M28 PolarHBondContact O-N 3.4Å
27	L	66.2	Low	64.2	Low	138 Å²	138	134.6 Å²	134.6	72%	0.723	75%	0.754	S	S	*	*	G	3₁₀ helix	trans	-78.8	0.1	175.4	-66.7	178.3	0	0	0	114.6	S24 A25	S24-L27 PolarHBondContact O-N 3.49Å; S24-L27 WeakPolarHBondContact O-CG 3.26Å; S24-L27 VanDerWaalsContact O-CG 3.3Å; A25-L27 VanDerWaalsContact C-N 3.27Å; A25-L27 PolarHBondContact O-N 3.1Å
28	M	64.9	Low	63.4	Low	176 Å²	176	132.8 Å²	132.8	87%	0.867	76%	0.755	S	S	*	*			trans	-101.9	60.2	175.2	-66.2	-172.5	71.6	0	0	111.5	H26	H26-M28 VanDerWaalsContact C-N 3.26Å; H26-M28 PolarHBondContact O-N 3.4Å
29	N	60.2	Low	62.5	Low	135 Å²	135	133.6 Å²	133.6	72%	0.722	76%	0.76	S	S	*	*			trans	-80.6	131.3	152.6	-72.1	-38.1	0	0	0	106.5
30	G	66	Low	62.2	Low	58 Å²	58	130.6 Å²	130.6	60%	0.598	76%	0.759	S	S	*	*	S	Bend	trans	-54.9	-174.7	176.9	0	0	0	0	0	113.2	I32	G30-I32 PolarHBondContact O-N 3.39Å
31	P	59.4	Low	61.8	Low	135 Å²	135	127.4 Å²	127.4	88%	0.877	76%	0.756	S	S	*	*	S	Bend	trans	-43.9	112.5	-162.5	19.9	-33	0	0	0	112	S33	P31-S33 PolarHBondContact O-N 3.15Å
32	I	60.9	Low	62	Low	142 Å²	142	131.6 Å²	131.6	73%	0.728	76%	0.759	S	S	*	*			trans	-68.5	100.9	-179	-54.9	174.5	0	0	0	105.7	G30 Q34	G30-I32 PolarHBondContact O-N 3.39Å; I32-Q34 PolarHBondContact O-N 3.42Å
33	S	63	Low	61.9	Low	111 Å²	111	127.7 Å²	127.7	78%	0.776	75%	0.753	S	S	*	*			trans	-62.1	93.9	164.9	-71.8	0	0	0	0	107.4	P31 T35	P31-S33 PolarHBondContact O-N 3.15Å; S33-T35 PolarHBondContact O-N 3.01Å
34	Q	59.1	Low	62	Low	176 Å²	176	127.2 Å²	127.2	82%	0.822	76%	0.758	S	S	*	*			trans	-60.2	101.8	172.6	-73.3	-179.6	-25.9	0	0	108.9	I32	I32-Q34 PolarHBondContact O-N 3.42Å
35	T	57.4	Low	62.4	Low	127 Å²	127	132.2 Å²	132.2	78%	0.779	78%	0.778	S	S	*	*			trans	-112.5	93.7	154.2	46.2	0	0	0	0	107.8	S33 S37	S33-T35 PolarHBondContact O-N 3.01Å; T35-S37 PolarHBondContact O-N 3.29Å
36	T	59.7	Low	62.7	Low	131 Å²	131	133.3 Å²	133.3	80%	0.804	78%	0.78	S	S	*	*			trans	-61.3	119.2	161.1	49.6	0	0	0	0	108.3
37	S	63	Low	62.8	Low	112 Å²	112	135.8 Å²	135.8	78%	0.783	79%	0.792	S	S	*	*			trans	-140.4	88.7	159.4	-72.9	0	0	0	0	107.6	T35 T39	T35-S37 PolarHBondContact O-N 3.29Å; S37-T39 PolarHBondContact O-N 3.35Å
38	Q	58.5	Low	62.6	Low	192 Å²	192	135.2 Å²	135.2	90%	0.897	79%	0.794	S	S	*	*			trans	-72.1	116.7	160.4	-68.9	-177.3	-25.8	0	0	107.2
39	T	57.3	Low	62.4	Low	129 Å²	129	132.5 Å²	132.5	79%	0.791	79%	0.79	S	S	*	*			trans	-144.2	105.6	156.3	-71.1	0	0	0	0	107.9	S37	S37-T39 PolarHBondContact O-N 3.35Å
40	S	65.8	Low	62.5	Low	119 Å²	119	130.7 Å²	130.7	83%	0.832	79%	0.794	S	S	*	*			trans	-65.9	126.6	163.6	175.8	0	0	0	0	109.1
41	S	62.2	Low	62.3	Low	101 Å²	101	134 Å²	134	71%	0.706	80%	0.802	S	S	*	*				178.5	120.5	126.3	50.7	0	0	0	0	108.7
42	I	72.8	Confident	62.6	Low	161 Å²	161	137 Å²	137	83%	0.826	80%	0.802	S	S	*	*	P	Polyproline II helix	trans	-64.4	128.7	174.6	-59.5	173	0	0	0	107.7
43	P	64.4	Low	62.7	Low	106 Å²	106	136.6 Å²	136.6	69%	0.688	81%	0.805	S	S	*	*	P	Polyproline II helix	trans	-69.6	138.2	173.2	27.4	-31.7	0	0	0	110.1	L45	P43-L45 PolarHBondContact O-N 2.98Å
44	P	63.9	Low	62.7	Low	131 Å²	131	136.1 Å²	136.1	85%	0.851	80%	0.802	S	S	*	*	P	Polyproline II helix	trans	-62.4	137.8	-179.4	23.8	-31.4	0	0	0	111.7
45	L	68	Low	62.9	Low	173 Å²	173	136.5 Å²	136.5	91%	0.906	80%	0.804	S	S	*	*	P	Polyproline II helix	trans	-58.3	139.8	-176.1	-73	159.3	0	0	0	112.2	P43 Q47	P43-L45 PolarHBondContact O-N 2.98Å; L45-Q47 PolarHBondContact O-N 3.01Å
46	S	64.2	Low	62.9	Low	113 Å²	113	138.7 Å²	138.7	79%	0.79	81%	0.81	S	S	*	*			trans	-45.1	124.7	179.4	-172.2	0	0	0	0	112.8	V48	S46-V48 PolarHBondContact O-N 3.11Å
47	Q	62.7	Low	62.9	Low	185 Å²	185	142.9 Å²	142.9	86%	0.864	83%	0.827	S	S	*	*			trans	-60.2	122.3	174.2	-78.7	179.9	14.3	0	0	110.2	L45	L45-Q47 PolarHBondContact O-N 3.01Å
48	V	61.8	Low	62.9	Low	127 Å²	127	144.4 Å²	144.4	77%	0.77	83%	0.829	S	S	*	*			trans	-66.9	136.7	162	-175.1	0	0	0	0	107.5	S46 A50	S46-V48 PolarHBondContact O-N 3.11Å; V48-A50 PolarHBondContact O-N 3.4Å
49	P	59.1	Low	63.2	Low	119 Å²	119	141.9 Å²	141.9	77%	0.773	83%	0.826	S	S	*	*			trans	-58.9	113.9	179.4	-22.3	32.3	0	0	0	110.5	T51	P49-T51 PolarHBondContact O-N 3.2Å; P49-T51 VanDerWaalsContact O-N 3.15Å
50	A	63	Low	63.5	Low	97 Å²	97	142.6 Å²	142.6	80%	0.802	83%	0.828	S	S	*	*			trans	-65.7	114.1	167.9	0	0	0	0	0	107.4	V48 K52	V48-A50 PolarHBondContact O-N 3.4Å; A50-K52 PolarHBondContact O-N 3.01Å; A50-K52 VanDerWaalsContact O-N 3.11Å
51	T	61.4	Low	63.4	Low	128 Å²	128	144 Å²	144	79%	0.785	83%	0.827	S	S	*	*			trans	-52.2	117.7	173.2	37.6	0	0	0	0	109.4	P49 V53	P49-T51 PolarHBondContact O-N 3.2Å; P49-T51 VanDerWaalsContact O-N 3.15Å; T51-V53 PolarHBondContact O-N 3.37Å
52	K	65.3	Low	63.4	Low	198 Å²	198	146.7 Å²	146.7	86%	0.861	84%	0.835	S	S	*	*			trans	-65.9	100.2	176.3	-142.9	-173.6	-168.5	-121.3	0	107.9	A50 S54	A50-K52 PolarHBondContact O-N 3.01Å; A50-K52 VanDerWaalsContact O-N 3.11Å; K52-S54 VanDerWaalsContact C-N 3.26Å; K52-S54 PolarHBondContact O-N 3.39Å
53	V	63.6	Low	62.8	Low	132 Å²	132	145.7 Å²	145.7	80%	0.8	84%	0.835	S	S	*	*			trans	-74.4	90.9	167.1	-175.4	0	0	0	0	105.6	T51 E55	T51-V53 PolarHBondContact O-N 3.37Å; V53-E55 PolarHBondContact O-N 3.35Å
54	S	63	Low	62.7	Low	101 Å²	101	148.6 Å²	148.6	71%	0.706	85%	0.846	S	S	*	*			trans	-59.2	129.4	174.4	-164.4	0	0	0	0	108.2	K52 L56	K52-S54 VanDerWaalsContact C-N 3.26Å; K52-S54 PolarHBondContact O-N 3.39Å; S54-L56 PolarHBondContact O-N 3.38Å
55	E	64	Low	62.6	Low	185 Å²	185	149.9 Å²	149.9	86%	0.864	85%	0.846	S	S	*	*			trans	-39	122.8	-172.2	-63.9	168.3	-171	0	0	113.2	V53 N57	V53-E55 PolarHBondContact O-N 3.35Å; E55-N57 PolarHBondContact O-N 2.87Å
56	L	58.1	Low	62.2	Low	173 Å²	173	148 Å²	148	91%	0.906	84%	0.841	S	S	*	*			trans	-74.5	113.8	166.1	-173.4	65.3	0	0	0	106.8	S54	S54-L56 PolarHBondContact O-N 3.38Å
57	N	59.8	Low	62	Low	218 Å²	218	151.2 Å²	151.2	100%	1.166	85%	0.845	S	S	*	*			trans	-47	0	167.7	157	6.5	0	0	0	111.1	E55	E55-N57 PolarHBondContact O-N 2.87Å

Retrieved 57 of 57 residues in 27 ms (Link to these results)

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